Wall clock time and date at job start Mon Mar 30 2020 07:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.41820 * 120.00258 * 2 1 4 4 N 1.30218 * 119.99765 * 359.97438 * 3 2 1 5 5 N 1.40097 * 120.00029 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00147 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46936 * 30.00289 * 6 5 4 8 8 C 1.53001 * 109.47128 * 269.99856 * 6 5 4 9 9 C 1.50703 * 109.47135 * 150.00220 * 6 5 4 10 10 H 1.08001 * 119.99960 * 5.78891 * 9 6 5 11 11 C 1.37873 * 120.00081 * 185.78334 * 9 6 5 12 12 N 1.31516 * 119.99964 * 7.41921 * 11 9 6 13 13 Si 1.86803 * 119.99925 * 187.42025 * 11 9 6 14 14 H 1.48498 * 109.47024 * 94.97735 * 13 11 9 15 15 H 1.48502 * 109.46862 * 214.97225 * 13 11 9 16 16 H 1.48493 * 109.47145 * 334.96960 * 13 11 9 17 17 C 1.34857 * 119.99530 * 179.97438 * 2 1 3 18 18 C 1.47207 * 120.00381 * 7.45522 * 17 2 1 19 19 C 1.39829 * 120.17155 * 219.38204 * 18 17 2 20 20 C 1.37890 * 119.82560 * 179.74768 * 19 18 17 21 21 C 1.38403 * 120.17048 * 0.53053 * 20 19 18 22 22 C 1.38394 * 120.34433 * 359.74139 * 21 20 19 23 23 C 1.37894 * 120.17326 * 359.97438 * 22 21 20 24 24 H 1.08993 * 109.46760 * 93.81953 * 1 2 3 25 25 H 1.08996 * 109.46707 * 213.81869 * 1 2 3 26 26 H 1.08999 * 109.46895 * 333.81863 * 1 2 3 27 27 H 1.07999 * 120.00029 * 180.02562 * 3 2 1 28 28 H 0.97001 * 119.99883 * 0.02562 * 5 4 3 29 29 H 1.09001 * 109.47076 * 182.09025 * 8 6 5 30 30 H 1.09000 * 109.47616 * 302.09568 * 8 6 5 31 31 H 1.09009 * 109.46608 * 62.09319 * 8 6 5 32 32 H 0.96999 * 119.99903 * 179.97438 * 12 11 9 33 33 H 1.07997 * 119.99615 * 187.45174 * 17 2 1 34 34 H 1.08007 * 120.08327 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.91503 * 180.29634 * 20 19 18 36 36 H 1.07999 * 119.82312 * 179.72229 * 21 20 19 37 37 H 1.07998 * 119.91022 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.08913 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2162 1.2282 0.0000 4 7 1.5652 2.3559 -0.0005 5 7 2.2656 3.5692 -0.0010 6 6 1.5332 4.8379 -0.0010 7 1 0.5810 4.7077 0.5132 8 6 1.2776 5.2793 -1.4436 9 6 2.3480 5.8883 0.7088 10 1 3.3521 5.6629 1.0364 11 6 1.8116 7.1373 0.9399 12 7 0.5443 7.3681 0.6744 13 14 2.8848 8.5015 1.6301 14 1 3.4162 9.3255 0.5148 15 1 2.0765 9.3568 2.5359 16 1 4.0146 7.9069 2.3884 17 6 2.1813 -1.1680 0.0005 18 6 1.4546 -2.4375 -0.1643 19 6 1.8272 -3.5621 0.5784 20 6 1.1382 -4.7463 0.4221 21 6 0.0873 -4.8264 -0.4750 22 6 -0.2838 -3.7193 -1.2178 23 6 0.3916 -2.5264 -1.0686 24 1 -0.3632 -0.0685 -1.0253 25 1 -0.3632 -0.8538 0.5720 26 1 -0.3633 0.9222 0.4534 27 1 3.2962 1.2281 -0.0004 28 1 3.2356 3.5691 -0.0014 29 1 0.7654 6.2415 -1.4438 30 1 2.2282 5.3735 -1.9686 31 1 0.6571 4.5372 -1.9460 32 1 0.1669 8.2466 0.8373 33 1 3.2544 -1.1719 0.1218 34 1 2.6502 -3.5023 1.2753 35 1 1.4217 -5.6145 0.9986 36 1 -0.4456 -5.7579 -0.5961 37 1 -1.1046 -3.7898 -1.9161 38 1 0.1006 -1.6632 -1.6486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:27 Heat of formation + Delta-G solvation = 71.779424 kcal Electronic energy + Delta-G solvation = -17614.523462 eV Core-core repulsion = 14843.730043 eV Total energy + Delta-G solvation = -2770.793420 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.29430 -37.07582 -35.40952 -33.54220 -31.50586 -31.03862 -29.97287 -27.33449 -27.00104 -25.25263 -23.33270 -22.41121 -21.06036 -20.22464 -18.32822 -16.86678 -16.58883 -15.96043 -15.41922 -14.98878 -14.87155 -14.31508 -13.75177 -13.50315 -13.33749 -12.96932 -12.60839 -12.51970 -12.29586 -11.79491 -11.64730 -11.58080 -11.09110 -11.08237 -10.97792 -10.85363 -10.62498 -10.40244 -10.22092 -9.59583 -9.49910 -9.11225 -8.95106 -8.56515 -8.26623 -6.74235 -6.20013 -4.26150 0.89711 1.39856 1.97396 3.21442 3.28553 3.30790 3.50287 3.77715 3.89826 4.33451 4.87990 4.90945 4.94996 5.11345 5.13955 5.15737 5.43700 5.44250 5.56541 5.84444 5.94426 5.95982 6.04453 6.18596 6.26798 6.37815 6.47554 6.50301 6.57611 6.70636 6.85376 6.87887 7.01847 7.02233 7.11560 7.49150 7.67434 7.71758 8.08431 8.18463 8.80816 9.22055 9.39799 10.87938 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.053064 B = 0.003013 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.536374 B = 9290.777913 C = 9545.394194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.009 4.009 3 C -0.031 4.031 4 N -0.180 5.180 5 N -0.616 5.616 6 C 0.293 3.707 7 H 0.050 0.950 8 C -0.145 4.145 9 C -0.534 4.534 10 H 0.060 0.940 11 C 0.069 3.931 12 N -0.884 5.884 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.160 4.160 18 C -0.030 4.030 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.369 0.631 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -19.562 -2.420 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.012 4.012 3 C -0.235 4.235 4 N 0.005 4.995 5 N -0.352 5.352 6 C 0.191 3.809 7 H 0.068 0.932 8 C -0.204 4.204 9 C -0.573 4.573 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.521 5.521 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.185 4.185 18 C -0.030 4.030 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.206 0.794 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.617 -18.711 -2.405 18.875 hybrid contribution 1.895 0.604 0.353 2.020 sum 1.278 -18.107 -2.052 18.268 Atomic orbital electron populations 1.20976 0.91786 1.03001 1.01885 1.19296 0.95430 0.90860 0.95585 1.22469 0.96819 0.91013 1.13237 1.74250 1.29010 0.93570 1.02683 1.49199 1.06206 1.00790 1.78968 1.18601 0.93283 0.76320 0.92734 0.93242 1.22141 0.98865 1.01190 0.98224 1.21193 1.00788 0.96591 1.38726 0.92158 1.24865 0.94944 0.98526 0.95148 1.69957 1.11532 1.22838 1.47796 0.86441 0.80273 0.81618 0.78853 1.20477 1.21010 1.19832 1.21620 0.98650 0.90101 1.08128 1.18981 0.95072 0.93403 0.95565 1.21326 1.00271 0.92524 0.99429 1.21032 0.96446 0.97673 0.98866 1.21150 0.97939 0.98481 0.97445 1.21074 0.99983 0.93106 0.99756 1.21599 0.95520 0.97961 0.98274 0.91373 0.91771 0.90608 0.88443 0.79450 0.90650 0.95248 0.96385 0.92493 0.86250 0.86086 0.86420 0.86585 0.86292 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.06 36.01 0.29 -1.38 16 2 C -0.01 -0.14 5.76 -104.45 -0.60 -0.74 16 3 C -0.03 -0.52 10.43 -16.87 -0.18 -0.70 16 4 N -0.18 -3.65 10.42 30.94 0.32 -3.33 16 5 N -0.62 -13.54 6.10 -5.88 -0.04 -13.57 16 6 C 0.29 7.38 3.10 -69.08 -0.21 7.17 16 7 H 0.05 1.40 8.10 -51.93 -0.42 0.98 16 8 C -0.14 -3.47 9.38 37.16 0.35 -3.12 16 9 C -0.53 -14.24 8.67 -34.44 -0.30 -14.54 16 10 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 11 C 0.07 1.85 5.22 -17.82 -0.09 1.75 16 12 N -0.88 -24.67 12.08 55.43 0.67 -24.00 16 13 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.16 -2.04 9.44 -37.14 -0.35 -2.39 16 18 C -0.03 -0.36 5.07 -105.06 -0.53 -0.89 16 19 C -0.12 -1.26 9.80 -39.11 -0.38 -1.64 16 20 C -0.12 -1.18 10.03 -39.65 -0.40 -1.58 16 21 C -0.13 -1.25 10.04 -39.46 -0.40 -1.64 16 22 C -0.12 -1.22 10.03 -39.65 -0.40 -1.61 16 23 C -0.12 -1.32 7.89 -39.11 -0.31 -1.62 16 24 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 25 H 0.06 0.82 6.79 -51.93 -0.35 0.47 16 26 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 27 H 0.10 1.50 8.03 -52.49 -0.42 1.08 16 28 H 0.37 7.51 8.57 -182.60 -1.56 5.94 16 29 H 0.07 1.93 6.80 -51.93 -0.35 1.58 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.41 5.77 -52.49 -0.30 1.11 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -28.22 323.09 -9.35 -37.57 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.64 Total: 5.79 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.51 Total: -22.94 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.96 Total: -40.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.22 -9.35 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds