Wall clock time and date at job start Mon Mar 30 2020 07:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.41820 * 120.00258 * 2 1 4 4 N 1.30218 * 119.99765 * 359.97438 * 3 2 1 5 5 N 1.40097 * 120.00029 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00147 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.46936 * 30.00289 * 6 5 4 8 8 C 1.53001 * 109.47128 * 269.99856 * 6 5 4 9 9 C 1.50703 * 109.47135 * 150.00220 * 6 5 4 10 10 H 1.08001 * 119.99960 * 5.78891 * 9 6 5 11 11 C 1.37873 * 120.00081 * 185.78334 * 9 6 5 12 12 N 1.31516 * 119.99964 * 7.41921 * 11 9 6 13 13 Si 1.86803 * 119.99925 * 187.42025 * 11 9 6 14 14 H 1.48498 * 109.47024 * 94.97735 * 13 11 9 15 15 H 1.48502 * 109.46862 * 214.97225 * 13 11 9 16 16 H 1.48493 * 109.47145 * 334.96960 * 13 11 9 17 17 C 1.34857 * 119.99530 * 179.97438 * 2 1 3 18 18 C 1.47207 * 120.00381 * 7.45522 * 17 2 1 19 19 C 1.39829 * 120.17155 * 219.38204 * 18 17 2 20 20 C 1.37890 * 119.82560 * 179.74768 * 19 18 17 21 21 C 1.38403 * 120.17048 * 0.53053 * 20 19 18 22 22 C 1.38394 * 120.34433 * 359.74139 * 21 20 19 23 23 C 1.37894 * 120.17326 * 359.97438 * 22 21 20 24 24 H 1.08993 * 109.46760 * 93.81953 * 1 2 3 25 25 H 1.08996 * 109.46707 * 213.81869 * 1 2 3 26 26 H 1.08999 * 109.46895 * 333.81863 * 1 2 3 27 27 H 1.07999 * 120.00029 * 180.02562 * 3 2 1 28 28 H 0.97001 * 119.99883 * 0.02562 * 5 4 3 29 29 H 1.09001 * 109.47076 * 182.09025 * 8 6 5 30 30 H 1.09000 * 109.47616 * 302.09568 * 8 6 5 31 31 H 1.09009 * 109.46608 * 62.09319 * 8 6 5 32 32 H 0.96999 * 119.99903 * 179.97438 * 12 11 9 33 33 H 1.07997 * 119.99615 * 187.45174 * 17 2 1 34 34 H 1.08007 * 120.08327 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.91503 * 180.29634 * 20 19 18 36 36 H 1.07999 * 119.82312 * 179.72229 * 21 20 19 37 37 H 1.07998 * 119.91022 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.08913 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2162 1.2282 0.0000 4 7 1.5652 2.3559 -0.0005 5 7 2.2656 3.5692 -0.0010 6 6 1.5332 4.8379 -0.0010 7 1 0.5810 4.7077 0.5132 8 6 1.2776 5.2793 -1.4436 9 6 2.3480 5.8883 0.7088 10 1 3.3521 5.6629 1.0364 11 6 1.8116 7.1373 0.9399 12 7 0.5443 7.3681 0.6744 13 14 2.8848 8.5015 1.6301 14 1 3.4162 9.3255 0.5148 15 1 2.0765 9.3568 2.5359 16 1 4.0146 7.9069 2.3884 17 6 2.1813 -1.1680 0.0005 18 6 1.4546 -2.4375 -0.1643 19 6 1.8272 -3.5621 0.5784 20 6 1.1382 -4.7463 0.4221 21 6 0.0873 -4.8264 -0.4750 22 6 -0.2838 -3.7193 -1.2178 23 6 0.3916 -2.5264 -1.0686 24 1 -0.3632 -0.0685 -1.0253 25 1 -0.3632 -0.8538 0.5720 26 1 -0.3633 0.9222 0.4534 27 1 3.2962 1.2281 -0.0004 28 1 3.2356 3.5691 -0.0014 29 1 0.7654 6.2415 -1.4438 30 1 2.2282 5.3735 -1.9686 31 1 0.6571 4.5372 -1.9460 32 1 0.1669 8.2466 0.8373 33 1 3.2544 -1.1719 0.1218 34 1 2.6502 -3.5023 1.2753 35 1 1.4217 -5.6145 0.9986 36 1 -0.4456 -5.7579 -0.5961 37 1 -1.1046 -3.7898 -1.9161 38 1 0.1006 -1.6632 -1.6486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:22 Heat of formation + Delta-G solvation = 57.318973 kcal Electronic energy + Delta-G solvation = -17615.150515 eV Core-core repulsion = 14843.730043 eV Total energy + Delta-G solvation = -2771.420472 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.16081 -38.44871 -36.89651 -35.16132 -33.13181 -31.87404 -31.17112 -28.82407 -28.15283 -27.27517 -24.53675 -23.21461 -22.48971 -21.72836 -19.57867 -18.54299 -17.68223 -17.21104 -17.00997 -16.30261 -15.91834 -15.50560 -15.04050 -14.77460 -14.53320 -14.29644 -14.12023 -13.68429 -13.51020 -13.38854 -12.91119 -12.78549 -12.74223 -12.65848 -12.56849 -12.31727 -12.07573 -11.83035 -11.74693 -11.19959 -10.91118 -10.62520 -10.50081 -9.74041 -9.40424 -8.29000 -8.13594 -6.36320 -0.10819 0.61077 0.93915 1.41750 1.42312 1.53102 2.20097 2.27733 2.47397 3.04079 3.08879 3.94168 3.96970 4.12444 4.20428 4.32800 4.39968 4.62138 4.68132 4.71717 4.76171 4.83086 4.88681 4.96566 5.05836 5.14201 5.16624 5.19072 5.30781 5.45970 5.55473 5.59850 5.69784 5.71158 5.74099 5.84707 5.95673 6.17616 6.20843 6.38800 6.82808 7.34406 7.74617 8.85765 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.053064 B = 0.003013 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.536374 B = 9290.777913 C = 9545.394194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.057 4.057 3 C 0.014 3.986 4 N -0.236 5.236 5 N -0.639 5.639 6 C 0.305 3.695 7 H 0.005 0.995 8 C -0.131 4.131 9 C -0.549 4.549 10 H 0.061 0.939 11 C 0.020 3.980 12 N -0.916 5.916 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.107 4.107 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.123 4.123 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.115 0.885 28 H 0.373 0.627 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -22.343 -2.294 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.059 4.059 3 C -0.193 4.193 4 N -0.047 5.047 5 N -0.375 5.375 6 C 0.201 3.799 7 H 0.023 0.977 8 C -0.190 4.190 9 C -0.588 4.588 10 H 0.080 0.920 11 C -0.181 4.181 12 N -0.554 5.554 13 Si 0.793 3.207 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.132 4.132 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.141 4.141 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.133 0.867 28 H 0.210 0.790 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.595 -21.508 -2.285 21.638 hybrid contribution 1.518 0.939 0.302 1.810 sum 2.113 -20.569 -1.983 20.773 Atomic orbital electron populations 1.20847 0.91699 1.01841 1.02156 1.19286 0.95761 0.90558 1.00332 1.23014 0.97905 0.90892 1.07458 1.74303 1.29453 0.93657 1.07249 1.48609 1.05841 1.00539 1.82527 1.18137 0.91475 0.77911 0.92409 0.97732 1.21957 0.99001 0.99988 0.98060 1.21505 1.00972 0.97398 1.38919 0.92033 1.25723 0.96091 1.00804 0.95467 1.70083 1.13132 1.23409 1.48819 0.85387 0.78511 0.78502 0.78271 1.19640 1.20781 1.19221 1.21969 0.99505 0.89809 1.01884 1.19068 0.96264 0.93511 0.97454 1.21562 1.00594 0.92360 0.99193 1.21383 0.96134 0.98123 0.98919 1.21551 0.97492 0.99209 0.96283 1.21358 1.00384 0.92829 1.00268 1.21700 0.95441 0.98616 0.98361 0.90801 0.90873 0.93362 0.86740 0.78951 0.92845 0.94371 0.95876 0.92367 0.84472 0.84656 0.83939 0.84081 0.84498 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.04 8.06 71.24 0.57 -2.47 16 2 C -0.06 -1.61 5.76 -19.75 -0.11 -1.73 16 3 C 0.01 0.47 10.43 85.82 0.90 1.37 16 4 N -0.24 -9.87 10.42 -56.03 -0.58 -10.46 16 5 N -0.64 -29.15 6.10 -172.52 -1.05 -30.20 16 6 C 0.30 16.12 3.10 44.25 0.14 16.26 16 7 H 0.00 0.29 8.10 -2.39 -0.02 0.27 16 8 C -0.13 -6.52 9.38 71.98 0.67 -5.84 16 9 C -0.55 -30.14 8.67 25.60 0.22 -29.92 16 10 H 0.06 3.27 7.78 -2.91 -0.02 3.25 16 11 C 0.02 1.08 5.22 84.65 0.44 1.52 16 12 N -0.92 -52.80 12.08 21.45 0.26 -52.54 16 13 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 C -0.11 -2.45 9.44 23.85 0.23 -2.22 16 18 C -0.06 -1.35 5.07 -20.15 -0.10 -1.45 16 19 C -0.12 -2.16 9.80 22.57 0.22 -1.94 16 20 C -0.13 -1.97 10.03 22.23 0.22 -1.75 16 21 C -0.13 -1.94 10.04 22.35 0.22 -1.71 16 22 C -0.13 -2.25 10.03 22.23 0.22 -2.03 16 23 C -0.12 -2.55 7.89 22.58 0.18 -2.37 16 24 H 0.07 1.89 6.59 -2.39 -0.02 1.88 16 25 H 0.07 1.84 6.79 -2.39 -0.02 1.82 16 26 H 0.05 1.60 7.41 -2.39 -0.02 1.58 16 27 H 0.12 3.34 8.03 -2.91 -0.02 3.32 16 28 H 0.37 15.60 8.57 -213.32 -1.83 13.77 16 29 H 0.05 2.85 6.80 -2.39 -0.02 2.84 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.13 2.61 5.77 -2.91 -0.02 2.59 16 Total: -1.00 -62.68 323.09 3.89 -58.79 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.78 Total: 23.89 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 4.02 Total: -34.28 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -1.38 Total: -93.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.68 3.89 -58.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.111 kcal (2) G-P(sol) polarization free energy of solvation -62.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds