Wall clock time and date at job start Mon Mar 30 2020 07:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 C 1.50697 * 109.47686 * 239.99744 * 2 1 3 5 5 H 1.08004 * 120.00334 * 240.00182 * 4 2 1 6 6 C 1.37885 * 119.99662 * 59.99881 * 4 2 1 7 7 N 1.31509 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99681 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47364 * 89.99962 * 8 6 4 10 10 H 1.48497 * 109.47095 * 210.00092 * 8 6 4 11 11 H 1.48504 * 109.47433 * 330.00134 * 8 6 4 12 12 N 1.46501 * 109.47187 * 119.99620 * 2 1 3 13 13 N 1.40100 * 120.00208 * 270.00830 * 12 2 1 14 14 C 1.29739 * 120.00386 * 173.80194 * 13 12 2 15 15 C 1.47568 * 125.97821 * 347.14844 * 14 13 12 16 16 C 1.40207 * 129.99708 * 359.95380 * 15 14 13 17 17 C 1.37742 * 120.08667 * 180.02562 * 16 15 14 18 18 C 1.38389 * 120.13785 * 359.71922 * 17 16 15 19 19 C 1.38230 * 120.16516 * 0.56930 * 18 17 16 20 20 C 1.38275 * 120.32633 * 359.44758 * 19 18 17 21 21 C 1.50982 * 130.44958 * 180.25504 * 20 19 18 22 22 C 1.50956 * 125.98370 * 167.14057 * 14 13 12 23 23 H 1.09009 * 110.27803 * 299.06093 * 22 14 13 24 24 C 1.53005 * 110.27187 * 61.03594 * 22 14 13 25 25 H 1.08998 * 109.46549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47536 * 300.00292 * 1 2 3 27 27 H 1.09007 * 109.46625 * 60.00665 * 1 2 3 28 28 H 0.96995 * 120.00238 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99767 * 90.00002 * 12 2 1 30 30 H 1.08003 * 119.95660 * 0.04754 * 16 15 14 31 31 H 1.08004 * 119.93048 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.91421 * 180.29234 * 18 17 16 33 33 H 1.08000 * 119.83355 * 179.71309 * 19 18 17 34 34 H 1.08996 * 110.07618 * 299.21667 * 21 20 19 35 35 H 1.08994 * 110.08179 * 60.76985 * 21 20 19 36 36 H 1.09002 * 109.46761 * 58.55068 * 24 22 14 37 37 H 1.09004 * 109.47032 * 178.54695 * 24 22 14 38 38 H 1.08994 * 109.47314 * 298.55359 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3216 -1.1204 -4.0078 9 1 1.3432 -2.1618 -4.4118 10 1 2.4869 -0.1415 -5.1121 11 1 3.6296 -1.7584 -3.7120 12 7 2.0184 -0.6905 1.1962 13 7 2.2517 0.0300 2.3748 14 6 2.5679 -0.5962 3.4662 15 6 2.4619 -2.0505 3.6931 16 6 2.0168 -3.0663 2.8353 17 6 2.0028 -4.3752 3.2640 18 6 2.4332 -4.6930 4.5403 19 6 2.8680 -3.6972 5.3948 20 6 2.8873 -2.3789 4.9781 21 6 3.3150 -1.1275 5.7065 22 6 3.1088 0.0353 4.7262 23 1 4.0575 0.5322 4.5225 24 6 2.0990 1.0348 5.2939 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7097 1.1617 -3.4845 29 1 2.1800 -1.6467 1.1722 30 1 1.6849 -2.8222 1.8370 31 1 1.6598 -5.1558 2.6010 32 1 2.4251 -5.7211 4.8710 33 1 3.1984 -3.9507 6.3913 34 1 2.6993 -0.9822 6.5941 35 1 4.3659 -1.1985 5.9871 36 1 1.1592 0.5232 5.5019 37 1 2.4913 1.4634 6.2162 38 1 1.9272 1.8296 4.5682 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771881909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:47 Heat of formation + Delta-G solvation = 61.171318 kcal Electronic energy + Delta-G solvation = -18793.218737 eV Core-core repulsion = 16021.965315 eV Total energy + Delta-G solvation = -2771.253422 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99295 -36.59142 -35.69726 -33.57563 -31.23028 -30.59998 -30.22680 -27.40168 -26.20818 -25.25613 -23.82648 -21.87467 -21.06697 -20.01806 -19.25782 -17.06924 -16.06719 -15.48046 -15.42884 -14.94484 -14.69814 -13.95884 -13.87862 -13.16569 -12.93068 -12.67436 -12.64610 -12.39282 -12.16751 -11.81646 -11.66572 -11.33991 -11.09967 -10.99798 -10.87279 -10.81242 -10.66783 -10.47622 -10.24581 -10.09954 -9.43816 -8.99483 -8.74245 -8.60999 -8.47036 -6.70897 -6.15195 -4.23392 1.22695 1.53247 2.96571 3.23513 3.30145 3.33156 3.74054 4.07352 4.34945 4.52936 4.90011 5.08043 5.14434 5.17346 5.21564 5.30350 5.43101 5.60820 5.63043 5.70504 5.85027 5.90656 6.12486 6.13974 6.21027 6.29950 6.46342 6.55183 6.66960 6.69431 6.77651 6.96695 7.08055 7.13124 7.16111 7.56615 7.76630 7.83861 8.14359 8.28699 8.83867 9.31485 9.43463 10.90931 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.005447 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.892888 B = 5139.250791 C = 5955.812989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.293 3.707 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.621 5.621 13 N -0.179 5.179 14 C 0.015 3.985 15 C -0.063 4.063 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.091 4.091 21 C -0.072 4.072 22 C -0.017 4.017 23 H 0.086 0.914 24 C -0.137 4.137 25 H 0.025 0.975 26 H 0.011 0.989 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.373 0.627 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -6.144 15.287 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.191 3.809 3 H 0.061 0.939 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.360 5.360 13 N 0.009 4.991 14 C -0.173 4.173 15 C -0.066 4.066 16 C -0.137 4.137 17 C -0.134 4.134 18 C -0.146 4.146 19 C -0.127 4.127 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.037 4.037 23 H 0.105 0.895 24 C -0.195 4.195 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.215 0.785 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.641 -4.916 14.520 15.555 hybrid contribution 0.241 -1.790 -0.798 1.975 sum 2.882 -6.706 13.721 15.542 Atomic orbital electron populations 1.22232 0.99093 0.99176 1.00593 1.18599 0.90082 0.93800 0.78463 0.93868 1.21192 1.32288 1.13306 0.90129 0.92253 1.24848 0.94797 0.94970 0.98921 1.69884 1.36027 1.22456 1.23936 0.86425 0.79233 0.79294 0.82053 1.20507 1.20966 1.19836 1.49455 1.72402 1.08964 1.05204 1.73962 1.04289 1.27465 0.93339 1.22892 1.09943 0.89294 0.95122 1.20161 0.98089 0.93693 0.94669 1.21365 1.00236 0.92495 0.99629 1.20965 1.00166 0.95985 0.96313 1.21008 1.00650 0.98800 0.94154 1.20483 1.01142 0.91473 0.99559 1.20503 0.99330 0.94269 0.95293 1.20869 1.01517 0.90706 0.97872 1.20004 0.98875 0.94990 0.89855 0.89537 1.21787 0.98498 0.98823 1.00389 0.95587 0.96943 0.89040 0.92538 0.78512 0.85693 0.85990 0.86197 0.86438 0.90036 0.90206 0.92727 0.92686 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.29 37.16 0.35 -3.46 16 2 C 0.29 7.61 3.23 -69.08 -0.22 7.39 16 3 H 0.04 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.53 -14.42 8.74 -34.44 -0.30 -14.72 16 5 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.62 -14.34 5.87 -5.88 -0.03 -14.37 16 13 N -0.18 -3.83 11.58 35.19 0.41 -3.42 16 14 C 0.02 0.27 6.75 -79.55 -0.54 -0.26 16 15 C -0.06 -1.08 6.00 -104.96 -0.63 -1.71 16 16 C -0.12 -1.96 9.20 -39.02 -0.36 -2.32 16 17 C -0.12 -1.63 10.02 -39.71 -0.40 -2.03 16 18 C -0.13 -1.56 10.04 -39.53 -0.40 -1.96 16 19 C -0.11 -1.34 10.03 -39.57 -0.40 -1.74 16 20 C -0.09 -1.29 6.20 -104.08 -0.65 -1.93 16 21 C -0.07 -0.84 6.45 -27.50 -0.18 -1.02 16 22 C -0.02 -0.23 3.58 -91.40 -0.33 -0.56 16 23 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 24 C -0.14 -1.70 9.01 37.16 0.33 -1.37 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.37 8.19 4.62 -182.60 -0.84 7.35 16 30 H 0.13 2.28 5.28 -52.48 -0.28 2.00 16 31 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.08 0.80 7.68 -51.93 -0.40 0.41 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -29.16 312.55 -9.15 -38.31 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.03 Total: 6.98 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.81 Total: -23.94 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 1.00 Total: -41.92 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.16 -9.15 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771881909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.476 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds