Wall clock time and date at job start Mon Mar 30 2020 07:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 C 1.50697 * 109.47686 * 239.99744 * 2 1 3 5 5 H 1.08004 * 120.00334 * 240.00182 * 4 2 1 6 6 C 1.37885 * 119.99662 * 59.99881 * 4 2 1 7 7 N 1.31509 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99681 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47364 * 89.99962 * 8 6 4 10 10 H 1.48497 * 109.47095 * 210.00092 * 8 6 4 11 11 H 1.48504 * 109.47433 * 330.00134 * 8 6 4 12 12 N 1.46501 * 109.47187 * 119.99620 * 2 1 3 13 13 N 1.40100 * 120.00208 * 270.00830 * 12 2 1 14 14 C 1.29739 * 120.00386 * 173.80194 * 13 12 2 15 15 C 1.47568 * 125.97821 * 347.14844 * 14 13 12 16 16 C 1.40207 * 129.99708 * 359.95380 * 15 14 13 17 17 C 1.37742 * 120.08667 * 180.02562 * 16 15 14 18 18 C 1.38389 * 120.13785 * 359.71922 * 17 16 15 19 19 C 1.38230 * 120.16516 * 0.56930 * 18 17 16 20 20 C 1.38275 * 120.32633 * 359.44758 * 19 18 17 21 21 C 1.50982 * 130.44958 * 180.25504 * 20 19 18 22 22 C 1.50956 * 125.98370 * 167.14057 * 14 13 12 23 23 H 1.09009 * 110.27803 * 299.06093 * 22 14 13 24 24 C 1.53005 * 110.27187 * 61.03594 * 22 14 13 25 25 H 1.08998 * 109.46549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47536 * 300.00292 * 1 2 3 27 27 H 1.09007 * 109.46625 * 60.00665 * 1 2 3 28 28 H 0.96995 * 120.00238 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99767 * 90.00002 * 12 2 1 30 30 H 1.08003 * 119.95660 * 0.04754 * 16 15 14 31 31 H 1.08004 * 119.93048 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.91421 * 180.29234 * 18 17 16 33 33 H 1.08000 * 119.83355 * 179.71309 * 19 18 17 34 34 H 1.08996 * 110.07618 * 299.21667 * 21 20 19 35 35 H 1.08994 * 110.08179 * 60.76985 * 21 20 19 36 36 H 1.09002 * 109.46761 * 58.55068 * 24 22 14 37 37 H 1.09004 * 109.47032 * 178.54695 * 24 22 14 38 38 H 1.08994 * 109.47314 * 298.55359 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3216 -1.1204 -4.0078 9 1 1.3432 -2.1618 -4.4118 10 1 2.4869 -0.1415 -5.1121 11 1 3.6296 -1.7584 -3.7120 12 7 2.0184 -0.6905 1.1962 13 7 2.2517 0.0300 2.3748 14 6 2.5679 -0.5962 3.4662 15 6 2.4619 -2.0505 3.6931 16 6 2.0168 -3.0663 2.8353 17 6 2.0028 -4.3752 3.2640 18 6 2.4332 -4.6930 4.5403 19 6 2.8680 -3.6972 5.3948 20 6 2.8873 -2.3789 4.9781 21 6 3.3150 -1.1275 5.7065 22 6 3.1088 0.0353 4.7262 23 1 4.0575 0.5322 4.5225 24 6 2.0990 1.0348 5.2939 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7097 1.1617 -3.4845 29 1 2.1800 -1.6467 1.1722 30 1 1.6849 -2.8222 1.8370 31 1 1.6598 -5.1558 2.6010 32 1 2.4251 -5.7211 4.8710 33 1 3.1984 -3.9507 6.3913 34 1 2.6993 -0.9822 6.5941 35 1 4.3659 -1.1985 5.9871 36 1 1.1592 0.5232 5.5019 37 1 2.4913 1.4634 6.2162 38 1 1.9272 1.8296 4.5682 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771881909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:44 Heat of formation + Delta-G solvation = 45.105852 kcal Electronic energy + Delta-G solvation = -18793.915387 eV Core-core repulsion = 16021.965315 eV Total energy + Delta-G solvation = -2771.950072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14691 -37.99818 -37.13280 -35.34181 -32.97540 -31.70836 -31.48232 -29.08210 -27.37512 -27.20722 -25.16246 -23.00979 -22.62421 -21.46477 -20.61856 -18.69911 -17.73160 -17.05728 -16.53255 -16.43113 -15.76512 -15.56345 -15.20019 -14.60876 -14.43760 -14.09235 -13.93456 -13.70341 -13.42659 -13.23572 -13.06883 -12.88430 -12.81610 -12.69385 -12.40792 -12.24759 -12.04659 -11.88545 -11.80630 -11.69433 -11.21071 -10.67454 -10.62580 -9.96524 -9.67141 -8.33823 -8.20810 -6.39559 0.02910 0.44799 1.39239 1.40342 1.50991 1.64953 2.17570 2.43620 2.92803 3.06627 3.41992 3.78410 4.00544 4.06262 4.23630 4.28923 4.30454 4.48943 4.60082 4.64517 4.72232 4.84755 4.89043 4.93883 5.03206 5.06944 5.09761 5.15937 5.26220 5.36625 5.44679 5.48630 5.55660 5.58053 5.63534 5.75423 5.87560 6.08155 6.17612 6.38140 6.79434 7.32052 7.74889 8.83530 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.005447 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.892888 B = 5139.250791 C = 5955.812989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.304 3.696 3 H 0.002 0.998 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.271 1.271 12 N -0.644 5.644 13 N -0.239 5.239 14 C 0.043 3.957 15 C -0.115 4.115 16 C -0.137 4.137 17 C -0.129 4.129 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.083 4.083 21 C -0.065 4.065 22 C -0.024 4.024 23 H 0.096 0.904 24 C -0.131 4.131 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.268 0.732 29 H 0.374 0.626 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -8.372 18.209 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.200 3.800 3 H 0.020 0.980 4 C -0.588 4.588 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.196 1.196 12 N -0.384 5.384 13 N -0.048 5.048 14 C -0.147 4.147 15 C -0.118 4.118 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.085 4.085 21 C -0.102 4.102 22 C -0.045 4.045 23 H 0.114 0.886 24 C -0.189 4.189 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.216 0.784 30 H 0.115 0.885 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.883 -7.144 17.457 19.258 hybrid contribution -0.096 -1.221 -1.424 1.879 sum 3.787 -8.365 16.033 18.476 Atomic orbital electron populations 1.22034 0.99003 0.98798 0.99622 1.18157 0.90120 0.91769 0.79953 0.98042 1.21438 1.32714 1.13467 0.91226 0.92649 1.25714 0.94767 0.95609 1.01860 1.70006 1.36704 1.23566 1.24795 0.85355 0.78732 0.78266 0.78049 1.19509 1.20267 1.19560 1.48926 1.75266 1.08634 1.05568 1.73958 1.08775 1.28099 0.93948 1.23962 1.04531 0.91044 0.95128 1.20340 1.01561 0.93098 0.96801 1.21388 1.01413 0.94244 0.98789 1.21232 1.00540 0.94986 0.97903 1.21518 0.97711 1.00858 0.92792 1.20975 0.99829 0.90348 1.01268 1.20918 0.97602 0.96142 0.93855 1.20960 1.03831 0.87922 0.97497 1.20327 0.99250 0.96452 0.88451 0.88642 1.21743 0.98087 0.97793 1.01321 0.95471 0.96711 0.90914 0.92248 0.78351 0.88528 0.84464 0.82378 0.82301 0.87210 0.87275 0.93265 0.88914 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.24 9.29 71.98 0.67 -6.57 16 2 C 0.30 17.01 3.23 44.24 0.14 17.16 16 3 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 4 C -0.55 -31.53 8.74 25.60 0.22 -31.31 16 5 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -53.01 11.32 21.45 0.24 -52.76 16 8 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.64 -32.14 5.87 -172.52 -1.01 -33.15 16 13 N -0.24 -10.95 11.58 -42.57 -0.49 -11.44 16 14 C 0.04 1.59 6.75 45.41 0.31 1.90 16 15 C -0.12 -3.90 6.00 -20.09 -0.12 -4.02 16 16 C -0.14 -4.74 9.20 22.63 0.21 -4.53 16 17 C -0.13 -3.42 10.02 22.19 0.22 -3.20 16 18 C -0.11 -2.24 10.04 22.30 0.22 -2.01 16 19 C -0.11 -2.10 10.03 22.28 0.22 -1.87 16 20 C -0.08 -2.06 6.20 -19.51 -0.12 -2.18 16 21 C -0.07 -1.23 6.45 30.10 0.19 -1.04 16 22 C -0.02 -0.63 3.58 -11.30 -0.04 -0.67 16 23 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 24 C -0.13 -3.06 9.01 71.98 0.65 -2.41 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 4.13 6.07 -2.38 -0.01 4.11 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.37 17.86 4.62 -213.32 -0.99 16.88 16 30 H 0.10 3.84 5.28 -2.91 -0.02 3.82 16 31 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.11 1.54 7.68 -2.39 -0.02 1.53 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.49 312.55 4.06 -64.43 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.07 Total: 26.27 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 3.23 Total: -39.13 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -1.26 Total: -97.36 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.49 4.06 -64.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771881909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.534 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds