Wall clock time and date at job start Mon Mar 30 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46938 * 2 1 4 4 C 1.50694 * 109.47147 * 239.99756 * 2 1 3 5 5 H 1.08006 * 120.00037 * 246.61243 * 4 2 1 6 6 C 1.37881 * 119.99914 * 66.33916 * 4 2 1 7 7 N 1.31507 * 119.99971 * 0.83690 * 6 4 2 8 8 Si 1.86800 * 119.99693 * 180.83882 * 6 4 2 9 9 H 1.48509 * 109.47155 * 94.97313 * 8 6 4 10 10 H 1.48501 * 109.47120 * 214.96723 * 8 6 4 11 11 H 1.48495 * 109.47513 * 334.97007 * 8 6 4 12 12 N 1.46500 * 109.46960 * 119.99519 * 2 1 3 13 13 N 1.40100 * 120.00361 * 270.00106 * 12 2 1 14 14 C 1.29740 * 119.99976 * 180.02562 * 13 12 2 15 15 C 1.47497 * 119.99801 * 180.02562 * 14 13 12 16 16 C 1.39704 * 120.15088 * 174.17251 * 15 14 13 17 17 C 1.37922 * 119.83498 * 179.74224 * 16 15 14 18 18 C 1.38388 * 120.15281 * 0.56227 * 17 16 15 19 19 C 1.38349 * 120.32097 * 359.69470 * 18 17 16 20 20 C 1.37955 * 120.15191 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.07455 * 180.02562 * 20 19 18 22 22 C 1.53004 * 117.50000 * 0.47858 * 21 20 19 23 23 C 1.52997 * 117.50337 * 291.85092 * 21 20 19 24 24 H 1.09004 * 109.47582 * 293.86101 * 1 2 3 25 25 H 1.08999 * 109.47405 * 53.86744 * 1 2 3 26 26 H 1.09002 * 109.47346 * 173.86242 * 1 2 3 27 27 H 0.97006 * 120.00222 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99634 * 90.00666 * 12 2 1 29 29 H 1.08005 * 120.00359 * 359.97438 * 14 13 12 30 30 H 1.07990 * 120.08249 * 0.03018 * 16 15 14 31 31 H 1.07997 * 119.92097 * 180.27666 * 17 16 15 32 32 H 1.08008 * 119.83540 * 179.71869 * 18 17 16 33 33 H 1.08003 * 119.91872 * 180.02562 * 19 18 17 34 34 H 1.09005 * 115.54880 * 146.18038 * 21 20 19 35 35 H 1.08998 * 117.49606 * 359.97438 * 22 21 20 36 36 H 1.08997 * 117.49827 * 145.01984 * 22 21 20 37 37 H 1.08994 * 117.50077 * 214.97806 * 23 21 20 38 38 H 1.09001 * 117.49381 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5624 -1.6466 -1.1348 6 6 1.8103 -0.1681 -2.4785 7 7 1.1746 0.9773 -2.5941 8 14 2.4124 -1.0606 -4.0051 9 1 1.3127 -1.8904 -4.5595 10 1 2.8436 -0.0673 -5.0213 11 1 3.5595 -1.9334 -3.6481 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0300 2.3748 14 6 2.6847 -0.5815 3.4340 15 6 2.9299 0.1771 4.6750 16 6 3.2786 -0.4935 5.8500 17 6 3.5117 0.2227 7.0054 18 6 3.3895 1.6012 7.0053 19 6 3.0393 2.2713 5.8468 20 6 2.8088 1.5683 4.6824 21 6 2.4280 2.3001 3.4212 22 6 2.3238 3.8249 3.4931 23 6 1.0558 2.9757 3.3832 24 1 -0.3634 0.4157 0.9398 25 1 -0.3634 0.6060 -0.8300 26 1 -0.3634 -1.0218 -0.1099 27 1 1.0181 1.3586 -3.4722 28 1 2.1800 -1.6467 1.1722 29 1 2.8647 -1.6461 3.4074 30 1 3.3700 -1.5695 5.8524 31 1 3.7857 -0.2938 7.9133 32 1 3.5688 2.1566 7.9142 33 1 2.9461 3.3473 5.8540 34 1 2.8000 1.8639 2.4940 35 1 2.5303 4.2986 4.4528 36 1 2.6274 4.3921 2.6133 37 1 0.5252 2.9844 2.4312 38 1 0.4286 2.8912 4.2707 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771883987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:40 Heat of formation + Delta-G solvation = 92.940930 kcal Electronic energy + Delta-G solvation = -18561.438412 eV Core-core repulsion = 15791.562624 eV Total energy + Delta-G solvation = -2769.875788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.49304 -36.41734 -36.24793 -34.09575 -31.91996 -30.42835 -30.07037 -27.08577 -25.22871 -23.98308 -22.91024 -21.93422 -20.52870 -20.10260 -19.77329 -17.11630 -16.29618 -16.10761 -15.28699 -14.92772 -14.56761 -14.06807 -13.82768 -13.70885 -13.01260 -12.92472 -12.52266 -12.27481 -11.95259 -11.51286 -11.29968 -11.10380 -10.97052 -10.87388 -10.71213 -10.67083 -10.36121 -10.30000 -10.17905 -10.11717 -9.17703 -8.94141 -8.75138 -8.53700 -8.33916 -6.78269 -6.17336 -4.24212 1.27333 1.57500 3.06209 3.22305 3.29449 3.31963 3.77174 4.02737 4.34519 4.45124 4.91033 5.04346 5.12404 5.17084 5.21745 5.33678 5.47283 5.50842 5.71309 5.74691 5.94736 6.02735 6.15751 6.25709 6.29065 6.48787 6.52234 6.58832 6.68091 6.75050 6.91399 7.02315 7.06146 7.10153 7.20917 7.53057 7.72675 7.75968 8.12278 8.25404 8.83902 9.30041 9.42440 10.90268 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.004667 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330658 B = 5998.163630 C = 6539.448437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.297 3.703 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.626 5.626 13 N -0.180 5.180 14 C -0.019 4.019 15 C -0.005 4.005 16 C -0.112 4.112 17 C -0.127 4.127 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.032 4.032 21 C -0.105 4.105 22 C -0.194 4.194 23 C -0.158 4.158 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.264 0.736 28 H 0.367 0.633 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 1.190 15.209 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.195 3.805 3 H 0.063 0.937 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.362 5.362 13 N 0.007 4.993 14 C -0.225 4.225 15 C -0.008 4.008 16 C -0.133 4.133 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.034 4.034 21 C -0.123 4.123 22 C -0.231 4.231 23 C -0.195 4.195 24 H 0.035 0.965 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.203 0.797 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.179 2.278 14.448 14.788 hybrid contribution 0.503 -1.745 -0.687 1.942 sum 2.681 0.533 13.760 14.029 Atomic orbital electron populations 1.22153 0.99219 0.99774 0.99246 1.18522 0.89861 0.93743 0.78364 0.93654 1.21221 1.37368 1.08048 0.90478 0.92250 1.24853 0.94862 0.94865 0.98925 1.69926 1.40609 1.17577 1.24180 0.86444 0.79019 0.79379 0.82342 1.20581 1.20989 1.19853 1.49226 1.71958 1.07849 1.07148 1.74186 1.04359 1.26639 0.94092 1.23524 1.09910 0.96830 0.92281 1.18300 0.98854 0.91850 0.91756 1.21090 1.00659 0.99561 0.91953 1.20922 1.01627 0.94218 0.97792 1.21061 1.01348 0.94515 0.97830 1.20985 1.00869 0.99836 0.92405 1.19355 0.97901 0.92373 0.93789 1.21464 1.00798 0.91898 0.98108 1.23086 1.03373 0.94090 1.02501 1.22824 0.90493 1.03300 1.02901 0.96539 0.90573 0.95258 0.92573 0.79719 0.88114 0.86055 0.86426 0.86620 0.86138 0.83857 0.89276 0.88795 0.88442 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.29 37.16 0.35 -3.12 16 2 C 0.30 7.40 3.11 -69.09 -0.21 7.18 16 3 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.53 -14.11 8.67 -34.44 -0.30 -14.41 16 5 H 0.06 1.55 7.76 -52.48 -0.41 1.14 16 6 C 0.07 1.83 5.33 -17.82 -0.10 1.73 16 7 N -0.89 -24.53 11.89 55.43 0.66 -23.87 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.63 -13.56 6.10 -5.89 -0.04 -13.59 16 13 N -0.18 -3.57 7.42 32.16 0.24 -3.33 16 14 C -0.02 -0.32 10.72 -14.66 -0.16 -0.48 16 15 C -0.01 -0.08 5.87 -105.05 -0.62 -0.70 16 16 C -0.11 -1.44 9.79 -39.15 -0.38 -1.83 16 17 C -0.13 -1.46 10.03 -39.64 -0.40 -1.86 16 18 C -0.13 -1.49 10.04 -39.49 -0.40 -1.89 16 19 C -0.12 -1.63 9.38 -39.64 -0.37 -2.00 16 20 C -0.03 -0.49 5.62 -104.20 -0.59 -1.08 16 21 C -0.10 -1.74 4.60 -91.77 -0.42 -2.16 16 22 C -0.19 -2.73 9.87 -26.73 -0.26 -2.99 16 23 C -0.16 -2.46 10.23 -26.73 -0.27 -2.73 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 1.96 6.77 -51.93 -0.35 1.60 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.37 7.42 8.56 -182.59 -1.56 5.86 16 29 H 0.10 1.55 8.02 -52.48 -0.42 1.13 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.12 1.40 5.92 -52.48 -0.31 1.09 16 34 H 0.14 2.82 5.76 -51.93 -0.30 2.52 16 35 H 0.09 1.08 6.08 -51.93 -0.32 0.76 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -27.69 319.03 -10.09 -37.79 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.61 Total: 8.87 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -4.13 Total: -26.33 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.86 Total: -40.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.69 -10.09 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.726 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds