Wall clock time and date at job start Mon Mar 30 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46938 * 2 1 4 4 C 1.50694 * 109.47147 * 239.99756 * 2 1 3 5 5 H 1.08006 * 120.00037 * 246.61243 * 4 2 1 6 6 C 1.37881 * 119.99914 * 66.33916 * 4 2 1 7 7 N 1.31507 * 119.99971 * 0.83690 * 6 4 2 8 8 Si 1.86800 * 119.99693 * 180.83882 * 6 4 2 9 9 H 1.48509 * 109.47155 * 94.97313 * 8 6 4 10 10 H 1.48501 * 109.47120 * 214.96723 * 8 6 4 11 11 H 1.48495 * 109.47513 * 334.97007 * 8 6 4 12 12 N 1.46500 * 109.46960 * 119.99519 * 2 1 3 13 13 N 1.40100 * 120.00361 * 270.00106 * 12 2 1 14 14 C 1.29740 * 119.99976 * 180.02562 * 13 12 2 15 15 C 1.47497 * 119.99801 * 180.02562 * 14 13 12 16 16 C 1.39704 * 120.15088 * 174.17251 * 15 14 13 17 17 C 1.37922 * 119.83498 * 179.74224 * 16 15 14 18 18 C 1.38388 * 120.15281 * 0.56227 * 17 16 15 19 19 C 1.38349 * 120.32097 * 359.69470 * 18 17 16 20 20 C 1.37955 * 120.15191 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.07455 * 180.02562 * 20 19 18 22 22 C 1.53004 * 117.50000 * 0.47858 * 21 20 19 23 23 C 1.52997 * 117.50337 * 291.85092 * 21 20 19 24 24 H 1.09004 * 109.47582 * 293.86101 * 1 2 3 25 25 H 1.08999 * 109.47405 * 53.86744 * 1 2 3 26 26 H 1.09002 * 109.47346 * 173.86242 * 1 2 3 27 27 H 0.97006 * 120.00222 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99634 * 90.00666 * 12 2 1 29 29 H 1.08005 * 120.00359 * 359.97438 * 14 13 12 30 30 H 1.07990 * 120.08249 * 0.03018 * 16 15 14 31 31 H 1.07997 * 119.92097 * 180.27666 * 17 16 15 32 32 H 1.08008 * 119.83540 * 179.71869 * 18 17 16 33 33 H 1.08003 * 119.91872 * 180.02562 * 19 18 17 34 34 H 1.09005 * 115.54880 * 146.18038 * 21 20 19 35 35 H 1.08998 * 117.49606 * 359.97438 * 22 21 20 36 36 H 1.08997 * 117.49827 * 145.01984 * 22 21 20 37 37 H 1.08994 * 117.50077 * 214.97806 * 23 21 20 38 38 H 1.09001 * 117.49381 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5624 -1.6466 -1.1348 6 6 1.8103 -0.1681 -2.4785 7 7 1.1746 0.9773 -2.5941 8 14 2.4124 -1.0606 -4.0051 9 1 1.3127 -1.8904 -4.5595 10 1 2.8436 -0.0673 -5.0213 11 1 3.5595 -1.9334 -3.6481 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0300 2.3748 14 6 2.6847 -0.5815 3.4340 15 6 2.9299 0.1771 4.6750 16 6 3.2786 -0.4935 5.8500 17 6 3.5117 0.2227 7.0054 18 6 3.3895 1.6012 7.0053 19 6 3.0393 2.2713 5.8468 20 6 2.8088 1.5683 4.6824 21 6 2.4280 2.3001 3.4212 22 6 2.3238 3.8249 3.4931 23 6 1.0558 2.9757 3.3832 24 1 -0.3634 0.4157 0.9398 25 1 -0.3634 0.6060 -0.8300 26 1 -0.3634 -1.0218 -0.1099 27 1 1.0181 1.3586 -3.4722 28 1 2.1800 -1.6467 1.1722 29 1 2.8647 -1.6461 3.4074 30 1 3.3700 -1.5695 5.8524 31 1 3.7857 -0.2938 7.9133 32 1 3.5688 2.1566 7.9142 33 1 2.9461 3.3473 5.8540 34 1 2.8000 1.8639 2.4940 35 1 2.5303 4.2986 4.4528 36 1 2.6274 4.3921 2.6133 37 1 0.5252 2.9844 2.4312 38 1 0.4286 2.8912 4.2707 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771883987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:40 Heat of formation + Delta-G solvation = 79.343944 kcal Electronic energy + Delta-G solvation = -18562.028021 eV Core-core repulsion = 15791.562624 eV Total energy + Delta-G solvation = -2770.465397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58975 -37.96204 -37.43516 -35.85664 -33.59380 -31.70652 -31.29168 -28.67994 -27.27396 -25.14988 -24.11751 -23.18661 -22.21312 -21.49006 -20.93896 -18.83003 -17.63768 -17.48189 -16.91159 -16.44537 -15.77512 -15.32724 -15.17009 -14.95083 -14.45449 -14.36884 -14.15100 -13.77439 -13.35062 -13.05212 -12.89426 -12.71155 -12.50613 -12.39208 -12.27569 -12.14580 -11.97387 -11.83663 -11.49382 -11.33667 -11.10496 -10.63147 -10.31410 -9.91511 -9.42246 -8.35855 -8.17860 -6.35701 0.16333 0.57602 1.40945 1.41422 1.52283 1.81163 2.19187 2.46705 2.90040 3.10492 3.27737 3.77605 3.93127 4.05619 4.16445 4.26969 4.33106 4.47074 4.52096 4.68029 4.72821 4.81421 4.85856 4.93623 5.01348 5.07284 5.10187 5.23639 5.29820 5.33113 5.40606 5.50846 5.67503 5.70522 5.74130 5.84601 5.92465 6.18896 6.20081 6.42574 6.85353 7.35766 7.79807 8.86519 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.004667 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330658 B = 5998.163630 C = 6539.448437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.311 3.689 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.646 5.646 13 N -0.219 5.219 14 C 0.012 3.988 15 C -0.045 4.045 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.172 4.172 23 C -0.164 4.164 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.370 0.630 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 0.637 18.048 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.207 3.793 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.382 5.382 13 N -0.028 5.028 14 C -0.197 4.197 15 C -0.047 4.047 16 C -0.125 4.125 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.047 4.047 21 C -0.139 4.139 22 C -0.209 4.209 23 C -0.201 4.201 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.207 0.793 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.270 1.722 17.302 17.692 hybrid contribution 0.258 -1.541 -1.260 2.007 sum 3.527 0.181 16.042 16.426 Atomic orbital electron populations 1.21951 0.98989 0.99353 0.98476 1.18043 0.89935 0.91647 0.79666 0.97870 1.21530 1.37474 1.08211 0.91495 0.92182 1.25691 0.94920 0.95542 1.01884 1.70055 1.41541 1.18885 1.24884 0.85404 0.78657 0.78219 0.78484 1.19773 1.20707 1.19340 1.48723 1.74442 1.07663 1.07372 1.74355 1.07581 1.26672 0.94235 1.24154 1.05524 0.97929 0.92049 1.18476 1.02032 0.92213 0.92020 1.21402 0.99009 1.00829 0.91306 1.21370 1.00183 0.94385 0.98396 1.21527 0.98642 0.94948 0.98261 1.21204 1.00954 1.00745 0.92100 1.19419 0.98696 0.92619 0.94007 1.21287 1.01353 0.93602 0.97671 1.23164 1.01239 0.92689 1.03800 1.22758 0.90733 1.04398 1.02210 0.96023 0.92780 0.94916 0.92461 0.79330 0.86406 0.83939 0.82904 0.83215 0.84595 0.87568 0.86379 0.89135 0.90849 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 9.29 71.98 0.67 -5.80 16 2 C 0.31 16.40 3.11 44.24 0.14 16.54 16 3 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 4 C -0.55 -30.13 8.67 25.60 0.22 -29.90 16 5 H 0.06 3.21 7.76 -2.91 -0.02 3.19 16 6 C 0.02 1.10 5.33 84.66 0.45 1.55 16 7 N -0.92 -52.57 11.89 21.45 0.25 -52.32 16 8 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.65 -29.39 6.10 -172.54 -1.05 -30.44 16 13 N -0.22 -9.11 7.42 -52.16 -0.39 -9.49 16 14 C 0.01 0.42 10.72 87.44 0.94 1.36 16 15 C -0.05 -1.35 5.87 -20.14 -0.12 -1.47 16 16 C -0.10 -2.36 9.79 22.55 0.22 -2.14 16 17 C -0.13 -2.27 10.03 22.23 0.22 -2.05 16 18 C -0.11 -2.13 10.04 22.33 0.22 -1.90 16 19 C -0.13 -3.10 9.38 22.23 0.21 -2.89 16 20 C -0.04 -1.35 5.62 -19.59 -0.11 -1.46 16 21 C -0.12 -4.12 4.60 -11.54 -0.05 -4.18 16 22 C -0.17 -4.81 9.87 30.60 0.30 -4.51 16 23 C -0.16 -5.26 10.23 30.60 0.31 -4.95 16 24 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.05 2.93 6.77 -2.39 -0.02 2.91 16 26 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.37 15.58 8.56 -213.31 -1.83 13.76 16 29 H 0.12 3.53 8.02 -2.91 -0.02 3.50 16 30 H 0.14 2.52 8.06 -2.92 -0.02 2.50 16 31 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.14 2.67 5.92 -2.91 -0.02 2.65 16 34 H 0.11 4.50 5.76 -2.38 -0.01 4.49 16 35 H 0.12 2.58 6.08 -2.39 -0.01 2.56 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -62.83 319.03 3.70 -59.13 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.77 Total: 29.89 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 3.63 Total: -41.82 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -1.18 Total: -92.25 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.83 3.70 -59.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771883987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.477 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds