Wall clock time and date at job start Mon Mar 30 2020 07:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47165 * 2 1 4 4 C 1.50704 * 109.46715 * 119.99739 * 2 1 3 5 5 H 1.07998 * 120.00018 * 120.00389 * 4 2 1 6 6 C 1.37875 * 120.00289 * 299.99764 * 4 2 1 7 7 N 1.31523 * 119.99705 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46845 * 60.00371 * 8 6 4 10 10 H 1.48506 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47514 * 300.00365 * 8 6 4 12 12 N 1.46499 * 109.47077 * 239.99448 * 2 1 3 13 13 N 1.40102 * 119.99777 * 90.00198 * 12 2 1 14 14 C 1.29745 * 120.00047 * 179.97438 * 13 12 2 15 15 C 1.47495 * 119.99881 * 180.02562 * 14 13 12 16 16 C 1.39704 * 120.15119 * 174.45372 * 15 14 13 17 17 C 1.37909 * 119.83635 * 179.97438 * 16 15 14 18 18 C 1.38392 * 120.15951 * 0.02562 * 17 16 15 19 19 C 1.38348 * 120.31684 * 359.97438 * 18 17 16 20 20 C 1.37961 * 120.15139 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.07567 * 180.02562 * 20 19 18 22 22 C 1.53001 * 117.49781 * 1.67674 * 21 20 19 23 23 C 1.52998 * 60.00212 * 252.51374 * 22 21 20 24 24 H 1.08996 * 109.47726 * 299.99895 * 1 2 3 25 25 H 1.09003 * 109.47321 * 60.00654 * 1 2 3 26 26 H 1.09005 * 109.46906 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00163 * 269.99600 * 12 2 1 29 29 H 1.07998 * 119.99789 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.08177 * 359.95144 * 16 15 14 31 31 H 1.08000 * 119.92017 * 179.72117 * 17 16 15 32 32 H 1.08001 * 119.84250 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.92438 * 180.02562 * 19 18 17 34 34 H 1.08991 * 115.55342 * 147.39137 * 21 20 19 35 35 H 1.08998 * 117.49977 * 0.02562 * 22 21 20 36 36 H 1.09004 * 117.49602 * 145.02862 * 22 21 20 37 37 H 1.08999 * 117.50202 * 252.51303 * 23 22 21 38 38 H 1.09000 * 117.49660 * 107.49064 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8073 -1.1188 4.0078 10 1 1.8277 -0.4190 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6848 -0.5818 -3.4340 15 6 2.9312 0.1768 -4.6746 16 6 3.5058 -0.4543 -5.7806 17 6 3.7328 0.2611 -6.9376 18 6 3.3933 1.6011 -7.0044 19 6 2.8239 2.2325 -5.9130 20 6 2.5911 1.5292 -4.7492 21 6 1.9703 2.2186 -3.5616 22 6 1.5840 3.6904 -3.7214 23 6 2.7927 3.3053 -2.8660 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7080 1.1611 3.4843 28 1 2.1800 -1.6468 -1.1720 29 1 2.8648 -1.6464 -3.4071 30 1 3.7719 -1.4998 -5.7296 31 1 4.1811 -0.2243 -7.7919 32 1 3.5737 2.1565 -7.9129 33 1 2.5611 3.2784 -5.9723 34 1 1.3304 1.5950 -2.9375 35 1 1.7786 4.1600 -4.6856 36 1 0.6896 4.0352 -3.2024 37 1 2.6935 3.3967 -1.7844 38 1 3.7828 3.5216 -3.2675 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:45 Heat of formation + Delta-G solvation = 94.563200 kcal Electronic energy + Delta-G solvation = -18557.721880 eV Core-core repulsion = 15787.916439 eV Total energy + Delta-G solvation = -2769.805441 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.49809 -36.42509 -36.25338 -34.12937 -31.92234 -30.41838 -30.04661 -27.05037 -25.25697 -23.99118 -22.90487 -21.92597 -20.51594 -20.11146 -19.78517 -17.10558 -16.29177 -16.13927 -15.28316 -14.91992 -14.57671 -14.06617 -13.85680 -13.65986 -13.11074 -12.87791 -12.52865 -12.28691 -11.91386 -11.51205 -11.29974 -11.09566 -10.97449 -10.90294 -10.75838 -10.56143 -10.34041 -10.25443 -10.23314 -10.12582 -9.18160 -8.92151 -8.77309 -8.51353 -8.34242 -6.78206 -6.16051 -4.24427 1.26957 1.57212 3.05637 3.24006 3.28901 3.30398 3.77113 4.01993 4.34635 4.45066 4.90782 5.03948 5.12042 5.16318 5.21614 5.33440 5.47068 5.50594 5.70826 5.74138 5.94275 6.02416 6.15521 6.25874 6.29032 6.48302 6.52148 6.57793 6.67844 6.75606 6.95341 7.02027 7.06551 7.12008 7.20739 7.54686 7.74728 7.83487 8.12405 8.28018 8.82885 9.29761 9.42525 10.89658 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.030337 B = 0.004646 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.747125 B = 6025.845903 C = 6572.147809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.626 5.626 13 N -0.181 5.181 14 C -0.018 4.018 15 C -0.006 4.006 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.032 4.032 21 C -0.107 4.107 22 C -0.193 4.193 23 C -0.158 4.158 24 H 0.090 0.910 25 H 0.011 0.989 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.367 0.633 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 1.435 -15.083 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.196 3.804 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.362 5.362 13 N 0.007 4.993 14 C -0.225 4.225 15 C -0.008 4.008 16 C -0.132 4.132 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.034 4.034 21 C -0.125 4.125 22 C -0.230 4.230 23 C -0.195 4.195 24 H 0.109 0.891 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.203 0.797 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.609 2.512 -14.313 14.764 hybrid contribution 0.603 -1.740 0.669 1.959 sum 3.212 0.772 -13.644 14.039 Atomic orbital electron populations 1.22215 0.99063 0.99225 1.00497 1.18518 0.90039 0.93518 0.78341 0.94030 1.21195 1.32315 1.13313 0.90244 0.92292 1.24846 0.94793 0.94980 0.98916 1.69877 1.35932 1.22501 1.24037 0.86494 0.79202 0.79609 0.81731 1.20180 1.21057 1.20180 1.49225 1.72069 1.07887 1.07009 1.74167 1.04285 1.26834 0.94057 1.23527 1.09847 0.96832 0.92296 1.18299 0.98174 0.92289 0.92021 1.21089 0.99881 0.99724 0.92545 1.20920 1.01380 0.94537 0.97724 1.21061 1.00395 0.94986 0.98294 1.20983 1.00261 0.99929 0.92944 1.19357 0.97230 0.92731 0.94093 1.21513 1.03347 0.90126 0.97490 1.23081 0.99777 0.98777 1.01405 1.22837 0.95128 1.02345 0.99230 0.89142 0.96945 0.95528 0.92500 0.79670 0.88096 0.86044 0.86420 0.86615 0.86147 0.83753 0.89275 0.88845 0.88382 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.29 37.16 0.35 -3.31 16 2 C 0.30 7.44 3.23 -69.08 -0.22 7.22 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.12 8.74 -34.44 -0.30 -14.42 16 5 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.63 -13.60 6.10 -5.88 -0.04 -13.64 16 13 N -0.18 -3.60 7.40 32.16 0.24 -3.36 16 14 C -0.02 -0.31 10.72 -14.66 -0.16 -0.47 16 15 C -0.01 -0.09 5.87 -105.05 -0.62 -0.70 16 16 C -0.11 -1.44 9.79 -39.15 -0.38 -1.83 16 17 C -0.13 -1.46 10.03 -39.65 -0.40 -1.86 16 18 C -0.13 -1.49 10.04 -39.48 -0.40 -1.88 16 19 C -0.12 -1.63 9.37 -39.64 -0.37 -2.00 16 20 C -0.03 -0.49 5.62 -104.19 -0.59 -1.08 16 21 C -0.11 -1.76 4.65 -91.77 -0.43 -2.19 16 22 C -0.19 -2.71 9.87 -26.73 -0.26 -2.97 16 23 C -0.16 -2.49 10.22 -26.73 -0.27 -2.76 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.37 7.46 8.58 -182.60 -1.57 5.90 16 29 H 0.10 1.55 8.02 -52.49 -0.42 1.13 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.39 5.93 -52.49 -0.31 1.08 16 34 H 0.15 2.79 5.67 -51.93 -0.29 2.50 16 35 H 0.09 1.07 6.08 -51.93 -0.32 0.75 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -27.60 317.91 -10.12 -37.72 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.57 Total: 9.17 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -4.15 Total: -26.55 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.83 Total: -40.76 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.60 -10.12 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.279 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds