Wall clock time and date at job start Mon Mar 30 2020 07:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47165 * 2 1 4 4 C 1.50704 * 109.46715 * 119.99739 * 2 1 3 5 5 H 1.07998 * 120.00018 * 120.00389 * 4 2 1 6 6 C 1.37875 * 120.00289 * 299.99764 * 4 2 1 7 7 N 1.31523 * 119.99705 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46845 * 60.00371 * 8 6 4 10 10 H 1.48506 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47514 * 300.00365 * 8 6 4 12 12 N 1.46499 * 109.47077 * 239.99448 * 2 1 3 13 13 N 1.40102 * 119.99777 * 90.00198 * 12 2 1 14 14 C 1.29745 * 120.00047 * 179.97438 * 13 12 2 15 15 C 1.47495 * 119.99881 * 180.02562 * 14 13 12 16 16 C 1.39704 * 120.15119 * 174.45372 * 15 14 13 17 17 C 1.37909 * 119.83635 * 179.97438 * 16 15 14 18 18 C 1.38392 * 120.15951 * 0.02562 * 17 16 15 19 19 C 1.38348 * 120.31684 * 359.97438 * 18 17 16 20 20 C 1.37961 * 120.15139 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.07567 * 180.02562 * 20 19 18 22 22 C 1.53001 * 117.49781 * 1.67674 * 21 20 19 23 23 C 1.52998 * 60.00212 * 252.51374 * 22 21 20 24 24 H 1.08996 * 109.47726 * 299.99895 * 1 2 3 25 25 H 1.09003 * 109.47321 * 60.00654 * 1 2 3 26 26 H 1.09005 * 109.46906 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00163 * 269.99600 * 12 2 1 29 29 H 1.07998 * 119.99789 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.08177 * 359.95144 * 16 15 14 31 31 H 1.08000 * 119.92017 * 179.72117 * 17 16 15 32 32 H 1.08001 * 119.84250 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.92438 * 180.02562 * 19 18 17 34 34 H 1.08991 * 115.55342 * 147.39137 * 21 20 19 35 35 H 1.08998 * 117.49977 * 0.02562 * 22 21 20 36 36 H 1.09004 * 117.49602 * 145.02862 * 22 21 20 37 37 H 1.08999 * 117.50202 * 252.51303 * 23 22 21 38 38 H 1.09000 * 117.49660 * 107.49064 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8073 -1.1188 4.0078 10 1 1.8277 -0.4190 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6848 -0.5818 -3.4340 15 6 2.9312 0.1768 -4.6746 16 6 3.5058 -0.4543 -5.7806 17 6 3.7328 0.2611 -6.9376 18 6 3.3933 1.6011 -7.0044 19 6 2.8239 2.2325 -5.9130 20 6 2.5911 1.5292 -4.7492 21 6 1.9703 2.2186 -3.5616 22 6 1.5840 3.6904 -3.7214 23 6 2.7927 3.3053 -2.8660 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7080 1.1611 3.4843 28 1 2.1800 -1.6468 -1.1720 29 1 2.8648 -1.6464 -3.4071 30 1 3.7719 -1.4998 -5.7296 31 1 4.1811 -0.2243 -7.7919 32 1 3.5737 2.1565 -7.9129 33 1 2.5611 3.2784 -5.9723 34 1 1.3304 1.5950 -2.9375 35 1 1.7786 4.1600 -4.6856 36 1 0.6896 4.0352 -3.2024 37 1 2.6935 3.3967 -1.7844 38 1 3.7828 3.5216 -3.2675 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:44 Heat of formation + Delta-G solvation = 81.090772 kcal Electronic energy + Delta-G solvation = -18558.306088 eV Core-core repulsion = 15787.916439 eV Total energy + Delta-G solvation = -2770.389649 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.59500 -37.97455 -37.43993 -35.89348 -33.57973 -31.68230 -31.28976 -28.65484 -27.30003 -25.15978 -24.11010 -23.17502 -22.21692 -21.49593 -20.94841 -18.81379 -17.66772 -17.47578 -16.92783 -16.43435 -15.76864 -15.33884 -15.16954 -14.92025 -14.52157 -14.43583 -14.07017 -13.77825 -13.28651 -13.09336 -12.88881 -12.71577 -12.49053 -12.40684 -12.22363 -12.12275 -12.00045 -11.84733 -11.49208 -11.35512 -11.11040 -10.59838 -10.31526 -9.92127 -9.42411 -8.35163 -8.16963 -6.35577 0.15773 0.57269 1.41582 1.43263 1.51148 1.80427 2.18971 2.46968 2.89536 3.10234 3.27722 3.77446 3.92682 4.05281 4.16466 4.26482 4.32685 4.46648 4.51527 4.67810 4.72432 4.81398 4.85879 4.95940 4.99681 5.06514 5.12202 5.23082 5.28832 5.32916 5.42308 5.51080 5.67403 5.70340 5.81393 5.85108 5.94579 6.19108 6.19857 6.42301 6.84611 7.36069 7.79194 8.86087 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.030337 B = 0.004646 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.747125 B = 6025.845903 C = 6572.147809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.312 3.688 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.268 1.268 12 N -0.646 5.646 13 N -0.220 5.220 14 C 0.013 3.987 15 C -0.046 4.046 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.045 4.045 21 C -0.122 4.122 22 C -0.169 4.169 23 C -0.168 4.168 24 H 0.068 0.932 25 H 0.016 0.984 26 H 0.028 0.972 27 H 0.267 0.733 28 H 0.370 0.630 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 0.956 -17.869 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.208 3.792 3 H 0.018 0.982 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.382 5.382 13 N -0.029 5.029 14 C -0.196 4.196 15 C -0.048 4.048 16 C -0.125 4.125 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.048 4.048 21 C -0.141 4.141 22 C -0.206 4.206 23 C -0.205 4.205 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.207 0.793 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.815 2.031 -17.116 17.653 hybrid contribution 0.305 -1.559 1.220 2.003 sum 4.120 0.472 -15.895 16.427 Atomic orbital electron populations 1.22018 0.98967 0.98942 0.99536 1.18040 0.90028 0.91489 0.79675 0.98159 1.21502 1.32549 1.13509 0.91279 0.92242 1.25683 0.94854 0.95617 1.01830 1.70009 1.36768 1.23680 1.24701 0.85459 0.78557 0.78705 0.77979 1.19894 1.20567 1.19288 1.48722 1.74559 1.07695 1.07238 1.74338 1.07456 1.26931 0.94204 1.24160 1.05366 0.97952 0.92110 1.18477 1.01205 0.92803 0.92295 1.21402 0.98322 1.00860 0.91966 1.21368 1.00340 0.94568 0.98068 1.21528 0.97872 0.95280 0.98683 1.21206 1.00511 1.00766 0.92526 1.19428 0.97828 0.93034 0.94464 1.21361 1.03653 0.90938 0.98136 1.23162 0.98591 0.96872 1.01991 1.22762 0.96433 1.03251 0.98064 0.91298 0.96506 0.95250 0.92414 0.79300 0.86390 0.83949 0.82905 0.83204 0.84578 0.87120 0.86398 0.88924 0.91013 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.29 71.98 0.67 -6.23 16 2 C 0.31 16.49 3.23 44.25 0.14 16.63 16 3 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 4 C -0.55 -30.25 8.74 25.60 0.22 -30.03 16 5 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -52.07 11.32 21.45 0.24 -51.82 16 8 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 12 N -0.65 -29.51 6.10 -172.53 -1.05 -30.56 16 13 N -0.22 -9.16 7.40 -52.16 -0.39 -9.55 16 14 C 0.01 0.44 10.72 87.44 0.94 1.38 16 15 C -0.05 -1.37 5.87 -20.14 -0.12 -1.49 16 16 C -0.11 -2.37 9.79 22.55 0.22 -2.15 16 17 C -0.13 -2.28 10.03 22.23 0.22 -2.06 16 18 C -0.11 -2.12 10.04 22.33 0.22 -1.90 16 19 C -0.13 -3.09 9.37 22.23 0.21 -2.88 16 20 C -0.05 -1.36 5.62 -19.59 -0.11 -1.47 16 21 C -0.12 -4.16 4.65 -11.54 -0.05 -4.21 16 22 C -0.17 -4.68 9.87 30.59 0.30 -4.38 16 23 C -0.17 -5.48 10.22 30.59 0.31 -5.17 16 24 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.37 15.68 8.58 -213.33 -1.83 13.85 16 29 H 0.12 3.54 8.02 -2.91 -0.02 3.52 16 30 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.14 2.66 5.93 -2.91 -0.02 2.64 16 34 H 0.11 4.59 5.67 -2.39 -0.01 4.58 16 35 H 0.12 2.54 6.08 -2.39 -0.01 2.53 16 36 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -62.56 317.91 3.69 -58.87 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.77 Total: 30.51 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 3.63 Total: -42.38 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -1.20 Total: -91.93 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.56 3.69 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.963 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds