Wall clock time and date at job start Mon Mar 30 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.93280 * 2 1 4 4 C 1.38232 * 120.16737 * 179.97438 * 3 2 1 5 5 C 1.38271 * 120.32318 * 359.97438 * 4 3 2 6 6 C 1.39284 * 119.91045 * 0.29025 * 5 4 3 7 7 C 1.37746 * 119.92858 * 180.02562 * 2 1 3 8 8 C 1.47566 * 110.62390 * 180.15580 * 6 5 4 9 9 N 1.29746 * 125.97544 * 179.86940 * 8 6 5 10 10 N 1.40104 * 120.00087 * 179.71131 * 9 8 6 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.50956 * 108.04499 * 359.59741 * 8 6 5 23 23 C 1.50991 * 130.44662 * 179.97438 * 5 4 3 24 24 H 1.09003 * 109.46549 * 90.00228 * 1 2 3 25 25 H 1.08997 * 109.47454 * 210.00054 * 1 2 3 26 26 H 1.08993 * 109.47027 * 330.00453 * 1 2 3 27 27 H 1.08001 * 119.91251 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.83509 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.95528 * 0.02562 * 7 2 1 30 30 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 31 31 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 32 32 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 33 33 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 35 35 H 1.08996 * 110.27218 * 119.19202 * 22 8 6 36 36 H 1.09006 * 110.27689 * 241.27029 * 22 8 6 37 37 H 1.08997 * 110.07553 * 60.81885 * 23 5 4 38 38 H 1.08993 * 110.07938 * 299.26292 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5798 1.2049 0.0005 5 6 4.2828 0.0143 0.0016 6 6 3.5963 -1.1976 -0.0040 7 6 2.1943 -1.1938 -0.0005 8 6 4.5417 -2.3306 0.0021 9 7 4.2239 -3.5886 0.0015 10 7 5.2286 -4.5650 0.0017 11 6 4.8698 -5.9853 0.0016 12 1 3.9178 -6.1195 0.5153 13 6 4.7450 -6.4798 -1.4409 14 6 5.9396 -6.7737 0.7121 15 1 6.8009 -6.2676 1.1224 16 6 5.8193 -8.1416 0.8376 17 7 4.7707 -8.7581 0.3376 18 14 7.1458 -9.1189 1.7177 19 1 6.7819 -10.5587 1.7177 20 1 8.4424 -8.9356 1.0177 21 1 7.2670 -8.6395 3.1179 22 6 5.9433 -1.7701 0.0023 23 6 5.7703 -0.2451 0.0018 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6550 2.1331 0.0004 28 1 4.1133 2.1440 0.0001 29 1 1.6524 -2.1280 -0.0014 30 1 6.1619 -4.3005 0.0019 31 1 5.6970 -6.3455 -1.9546 32 1 4.4776 -7.5364 -1.4410 33 1 3.9712 -5.9095 -1.9549 34 1 4.6863 -9.7204 0.4255 35 1 6.4776 -2.0893 0.8971 36 1 6.4782 -2.0897 -0.8921 37 1 6.2246 0.1832 0.8953 38 1 6.2249 0.1828 -0.8916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771885410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:59 Heat of formation + Delta-G solvation = 46.686755 kcal Electronic energy + Delta-G solvation = -18237.513111 eV Core-core repulsion = 15465.631592 eV Total energy + Delta-G solvation = -2771.881519 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86584 -36.90126 -35.28602 -33.53979 -31.70788 -30.60344 -30.14286 -27.27814 -26.26438 -25.25419 -24.04058 -22.43182 -20.79904 -20.05154 -18.90177 -17.06625 -16.00368 -15.21785 -15.17222 -15.08447 -14.77328 -14.10643 -13.71798 -13.60660 -13.09216 -12.71642 -12.57944 -12.36031 -12.17815 -11.94512 -11.68509 -11.57345 -11.29440 -11.15688 -11.02156 -10.81403 -10.67613 -10.38485 -10.23949 -10.16487 -9.46704 -9.05679 -8.76538 -8.51349 -8.35666 -6.73464 -6.15063 -4.23711 1.23405 1.52569 3.00289 3.24635 3.29369 3.30777 3.74194 4.03983 4.34764 4.53936 4.89970 4.99090 5.13327 5.16960 5.19719 5.32885 5.37402 5.52600 5.61211 5.62538 5.76315 5.86550 5.92684 6.13255 6.14339 6.21745 6.23503 6.54923 6.64240 6.76844 6.79627 6.98424 7.07875 7.13943 7.17643 7.56297 7.76373 7.84213 8.13442 8.28454 8.83345 9.31547 9.43118 10.90723 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.004119 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.817420 B = 6795.485789 C = 7354.259771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.105 4.105 5 C -0.099 4.099 6 C -0.006 4.006 7 C -0.096 4.096 8 C 0.012 3.988 9 N -0.180 5.180 10 N -0.618 5.618 11 C 0.296 3.704 12 H 0.042 0.958 13 C -0.150 4.150 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.102 4.102 23 C -0.070 4.070 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.370 0.630 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.012 0.988 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 17.628 -1.297 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.123 4.123 5 C -0.101 4.101 6 C -0.008 4.008 7 C -0.116 4.116 8 C -0.176 4.176 9 N 0.007 4.993 10 N -0.354 5.354 11 C 0.194 3.806 12 H 0.060 0.940 13 C -0.209 4.209 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.142 4.142 23 C -0.107 4.107 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.206 0.794 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.583 16.496 -1.314 16.932 hybrid contribution 1.811 -0.128 0.418 1.863 sum -1.773 16.368 -0.896 16.488 Atomic orbital electron populations 1.20759 0.91305 1.02599 1.02155 1.19697 0.95888 0.92874 1.00599 1.20869 0.93765 0.97244 1.02686 1.20408 0.93738 0.96562 1.01611 1.20489 0.95726 0.92859 1.01061 1.18859 0.92040 0.91520 0.98427 1.20947 0.92720 0.97816 1.00125 1.22491 0.93130 0.90099 1.11850 1.73999 1.21863 0.98354 1.05079 1.48954 1.02616 1.03692 1.80144 1.18562 0.97078 0.71895 0.93035 0.94011 1.22204 0.97602 1.03444 0.97673 1.21186 1.06818 0.92147 1.36940 0.92256 1.24856 0.95967 0.97369 0.95376 1.69882 1.28059 1.09765 1.44619 0.86477 0.81600 0.78775 0.80081 1.21049 1.20153 1.20162 1.21081 0.95636 0.95064 1.02379 1.20621 0.92095 0.95737 1.02276 0.91369 0.91488 0.91805 0.86282 0.86393 0.85746 0.79389 0.95520 0.89114 0.96853 0.92477 0.90522 0.90634 0.90418 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.09 -1.15 5.87 -104.75 -0.61 -1.76 16 3 C -0.13 -1.45 9.70 -39.53 -0.38 -1.83 16 4 C -0.11 -1.24 10.03 -39.57 -0.40 -1.64 16 5 C -0.10 -1.36 6.20 -104.08 -0.65 -2.01 16 6 C -0.01 -0.10 6.11 -104.97 -0.64 -0.74 16 7 C -0.10 -1.47 9.75 -39.02 -0.38 -1.85 16 8 C 0.01 0.22 7.44 -79.54 -0.59 -0.37 16 9 N -0.18 -3.87 11.58 35.19 0.41 -3.47 16 10 N -0.62 -13.98 6.07 -5.88 -0.04 -14.02 16 11 C 0.30 7.65 3.23 -69.09 -0.22 7.43 16 12 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.15 -3.73 9.29 37.16 0.35 -3.39 16 14 C -0.53 -14.35 8.74 -34.44 -0.30 -14.65 16 15 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 18 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.10 -1.49 5.67 -27.51 -0.16 -1.65 16 23 C -0.07 -0.85 6.80 -27.49 -0.19 -1.03 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.37 7.75 7.65 -182.59 -1.40 6.36 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -28.93 319.25 -9.87 -38.80 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.75 Total: 4.72 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.91 Total: -22.50 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 1.00 Total: -41.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.93 -9.87 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.483 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds