Wall clock time and date at job start Mon Mar 30 2020 07:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.93280 * 2 1 4 4 C 1.38232 * 120.16737 * 179.97438 * 3 2 1 5 5 C 1.38271 * 120.32318 * 359.97438 * 4 3 2 6 6 C 1.39284 * 119.91045 * 0.29025 * 5 4 3 7 7 C 1.37746 * 119.92858 * 180.02562 * 2 1 3 8 8 C 1.47566 * 110.62390 * 180.15580 * 6 5 4 9 9 N 1.29746 * 125.97544 * 179.86940 * 8 6 5 10 10 N 1.40104 * 120.00087 * 179.71131 * 9 8 6 11 11 C 1.46497 * 120.00312 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46733 * 330.00215 * 11 10 9 13 13 C 1.53000 * 109.47145 * 89.99780 * 11 10 9 14 14 C 1.50694 * 109.47115 * 209.99853 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.50956 * 108.04499 * 359.59741 * 8 6 5 23 23 C 1.50991 * 130.44662 * 179.97438 * 5 4 3 24 24 H 1.09003 * 109.46549 * 90.00228 * 1 2 3 25 25 H 1.08997 * 109.47454 * 210.00054 * 1 2 3 26 26 H 1.08993 * 109.47027 * 330.00453 * 1 2 3 27 27 H 1.08001 * 119.91251 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.83509 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.95528 * 0.02562 * 7 2 1 30 30 H 0.97006 * 119.99719 * 359.97438 * 10 9 8 31 31 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 32 32 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 33 33 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 35 35 H 1.08996 * 110.27218 * 119.19202 * 22 8 6 36 36 H 1.09006 * 110.27689 * 241.27029 * 22 8 6 37 37 H 1.08997 * 110.07553 * 60.81885 * 23 5 4 38 38 H 1.08993 * 110.07938 * 299.26292 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5798 1.2049 0.0005 5 6 4.2828 0.0143 0.0016 6 6 3.5963 -1.1976 -0.0040 7 6 2.1943 -1.1938 -0.0005 8 6 4.5417 -2.3306 0.0021 9 7 4.2239 -3.5886 0.0015 10 7 5.2286 -4.5650 0.0017 11 6 4.8698 -5.9853 0.0016 12 1 3.9178 -6.1195 0.5153 13 6 4.7450 -6.4798 -1.4409 14 6 5.9396 -6.7737 0.7121 15 1 6.8009 -6.2676 1.1224 16 6 5.8193 -8.1416 0.8376 17 7 4.7707 -8.7581 0.3376 18 14 7.1458 -9.1189 1.7177 19 1 6.7819 -10.5587 1.7177 20 1 8.4424 -8.9356 1.0177 21 1 7.2670 -8.6395 3.1179 22 6 5.9433 -1.7701 0.0023 23 6 5.7703 -0.2451 0.0018 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6550 2.1331 0.0004 28 1 4.1133 2.1440 0.0001 29 1 1.6524 -2.1280 -0.0014 30 1 6.1619 -4.3005 0.0019 31 1 5.6970 -6.3455 -1.9546 32 1 4.4776 -7.5364 -1.4410 33 1 3.9712 -5.9095 -1.9549 34 1 4.6863 -9.7204 0.4255 35 1 6.4776 -2.0893 0.8971 36 1 6.4782 -2.0897 -0.8921 37 1 6.2246 0.1832 0.8953 38 1 6.2249 0.1828 -0.8916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771885410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:58 Heat of formation + Delta-G solvation = 31.124995 kcal Electronic energy + Delta-G solvation = -18238.187920 eV Core-core repulsion = 15465.631592 eV Total energy + Delta-G solvation = -2772.556328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96841 -38.30973 -36.79944 -35.17411 -33.22624 -31.91631 -31.30904 -28.89351 -27.41107 -27.21343 -25.31187 -23.47434 -22.49808 -21.29365 -20.35162 -18.70893 -17.58815 -16.98253 -16.28086 -16.17621 -16.01141 -15.54949 -15.15405 -14.51741 -14.46217 -14.38442 -14.11604 -13.52450 -13.43375 -13.14289 -12.96996 -12.91045 -12.81558 -12.68546 -12.61350 -12.30919 -12.23368 -12.08892 -11.69565 -11.66973 -11.17643 -10.80915 -10.60193 -9.94264 -9.40311 -8.34814 -8.17838 -6.37564 0.08183 0.50299 1.41507 1.43891 1.51798 1.70765 2.13331 2.44996 2.94822 3.08955 3.44918 3.81196 3.99791 4.13206 4.20252 4.29251 4.29698 4.50114 4.62531 4.70399 4.78312 4.86628 4.88685 4.91754 5.01132 5.04436 5.08994 5.11834 5.14737 5.30381 5.38621 5.51997 5.52897 5.68695 5.74392 5.80301 5.89061 6.15111 6.17323 6.38939 6.81342 7.34011 7.76300 8.85362 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.004119 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.817420 B = 6795.485789 C = 7354.259771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.112 4.112 4 C -0.103 4.103 5 C -0.094 4.094 6 C -0.057 4.057 7 C -0.115 4.115 8 C 0.039 3.961 9 N -0.242 5.242 10 N -0.636 5.636 11 C 0.307 3.693 12 H -0.003 1.003 13 C -0.134 4.134 14 C -0.550 4.550 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.915 5.915 18 Si 0.973 3.027 19 H -0.280 1.280 20 H -0.266 1.266 21 H -0.273 1.273 22 C -0.107 4.107 23 C -0.063 4.063 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.103 0.897 30 H 0.374 0.626 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.014 0.986 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 21.074 -1.042 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.121 4.121 5 C -0.096 4.096 6 C -0.060 4.060 7 C -0.135 4.135 8 C -0.151 4.151 9 N -0.052 5.052 10 N -0.372 5.372 11 C 0.203 3.797 12 H 0.015 0.985 13 C -0.194 4.194 14 C -0.589 4.589 15 H 0.080 0.920 16 C -0.181 4.181 17 N -0.553 5.553 18 Si 0.797 3.203 19 H -0.205 1.205 20 H -0.191 1.191 21 H -0.198 1.198 22 C -0.147 4.147 23 C -0.100 4.100 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.121 0.879 30 H 0.211 0.789 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.692 19.961 -1.064 20.170 hybrid contribution 1.384 -0.871 0.333 1.669 sum -1.308 19.090 -0.731 19.149 Atomic orbital electron populations 1.20816 0.89387 1.03496 1.03044 1.20043 0.97438 0.92398 0.99898 1.21378 0.94044 0.97990 0.99669 1.20861 0.94064 0.97152 1.00017 1.20807 0.96488 0.92504 0.99841 1.19083 0.92599 0.91905 1.02382 1.21032 0.92798 0.98389 1.01314 1.23362 0.95963 0.89737 1.06010 1.74027 1.21890 0.99568 1.09696 1.48362 1.02841 1.02765 1.83281 1.18134 0.94818 0.74163 0.92582 0.98465 1.22012 0.97730 1.01995 0.97650 1.21473 1.07133 0.92841 1.37411 0.92038 1.25739 0.98133 0.98305 0.95945 1.70017 1.29729 1.10060 1.45479 0.85395 0.78942 0.77168 0.78809 1.20527 1.19096 1.19807 1.21236 0.93405 0.97335 1.02732 1.20674 0.91332 0.93370 1.04648 0.90409 0.92208 0.89348 0.82553 0.82631 0.87922 0.78895 0.94991 0.91113 0.96696 0.92330 0.90269 0.90045 0.88032 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.24 0.71 -1.22 16 2 C -0.10 -2.29 5.87 -19.95 -0.12 -2.41 16 3 C -0.11 -2.09 9.70 22.30 0.22 -1.88 16 4 C -0.10 -1.97 10.03 22.28 0.22 -1.74 16 5 C -0.09 -2.33 6.20 -19.51 -0.12 -2.45 16 6 C -0.06 -1.87 6.11 -20.09 -0.12 -1.99 16 7 C -0.11 -3.58 9.75 22.63 0.22 -3.36 16 8 C 0.04 1.45 7.44 45.41 0.34 1.79 16 9 N -0.24 -11.07 11.58 -42.57 -0.49 -11.56 16 10 N -0.64 -30.45 6.07 -172.53 -1.05 -31.50 16 11 C 0.31 16.83 3.23 44.24 0.14 16.97 16 12 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 13 C -0.13 -7.06 9.29 71.98 0.67 -6.39 16 14 C -0.55 -30.74 8.74 25.60 0.22 -30.51 16 15 H 0.06 3.32 7.79 -2.91 -0.02 3.30 16 16 C 0.02 1.06 5.30 84.66 0.45 1.50 16 17 N -0.91 -52.82 11.32 21.45 0.24 -52.57 16 18 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 C -0.11 -3.05 5.67 30.09 0.17 -2.88 16 23 C -0.06 -1.32 6.80 30.10 0.20 -1.11 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 26 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.10 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.37 16.43 7.65 -213.31 -1.63 14.80 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 33 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.23 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.53 319.25 3.35 -63.18 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.58 Total: 23.04 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.21 Total: -35.69 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -1.30 Total: -95.64 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.53 3.35 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.301 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds