Wall clock time and date at job start Mon Mar 30 2020 07:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47351 * 2 1 4 4 C 1.50705 * 109.47100 * 240.00498 * 2 1 3 5 5 H 1.07995 * 119.99979 * 239.99604 * 4 2 1 6 6 C 1.37881 * 119.99738 * 59.99791 * 4 2 1 7 7 N 1.31510 * 119.99976 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99461 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47216 * 90.00147 * 8 6 4 10 10 H 1.48510 * 109.46651 * 209.99826 * 8 6 4 11 11 H 1.48495 * 109.47358 * 329.99467 * 8 6 4 12 12 N 1.46502 * 109.47383 * 120.00444 * 2 1 3 13 13 N 1.40101 * 119.99597 * 269.99686 * 12 2 1 14 14 C 1.29749 * 119.99623 * 173.80343 * 13 12 2 15 15 C 1.50954 * 125.97940 * 167.13913 * 14 13 12 16 16 C 1.53479 * 105.40911 * 179.97438 * 15 14 13 17 17 H 1.08993 * 110.07610 * 119.27443 * 16 15 14 18 18 C 1.53001 * 110.07455 * 240.82415 * 16 15 14 19 19 C 1.51192 * 106.25950 * 0.07404 * 16 15 14 20 20 C 1.38275 * 130.42840 * 179.97438 * 19 16 15 21 21 C 1.38232 * 120.32416 * 179.97438 * 20 19 16 22 22 C 1.38386 * 120.16522 * 359.97438 * 21 20 19 23 23 C 1.37732 * 120.14692 * 0.02562 * 22 21 20 24 24 C 1.39292 * 109.66434 * 359.92628 * 19 16 15 25 25 H 1.09003 * 109.47041 * 299.99297 * 1 2 3 26 26 H 1.08996 * 109.47256 * 59.99613 * 1 2 3 27 27 H 1.09004 * 109.47351 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99430 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99822 * 90.00507 * 12 2 1 30 30 H 1.08998 * 110.27526 * 298.96738 * 15 14 13 31 31 H 1.09003 * 110.26910 * 60.94832 * 15 14 13 32 32 H 1.08994 * 109.47304 * 58.54877 * 18 16 15 33 33 H 1.09002 * 109.46620 * 178.54244 * 18 16 15 34 34 H 1.08995 * 109.47152 * 298.53984 * 18 16 15 35 35 H 1.07998 * 119.83604 * 359.94492 * 20 19 16 36 36 H 1.08002 * 119.91624 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.92302 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.96210 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1614 -4.4120 10 1 2.4864 -0.1409 -5.1124 11 1 3.6292 -1.7579 -3.7124 12 7 2.0184 -0.6907 1.1961 13 7 2.2519 0.0298 2.3747 14 6 2.5682 -0.5966 3.4661 15 6 3.1094 0.0348 4.7259 16 6 3.3156 -1.1266 5.7079 17 1 4.3663 -1.1967 5.9891 18 6 2.4505 -0.9214 6.9531 19 6 2.8883 -2.3795 4.9775 20 6 2.8693 -3.6979 5.3940 21 6 2.4301 -4.6930 4.5410 22 6 2.0053 -4.3758 3.2628 23 6 2.0186 -3.0669 2.8343 24 6 2.4625 -2.0509 3.6927 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.7080 1.1610 -3.4843 29 1 2.1801 -1.6468 1.1720 30 1 4.0588 0.5301 4.5225 31 1 2.3908 0.7480 5.1296 32 1 1.4028 -0.8541 6.6605 33 1 2.5849 -1.7638 7.6316 34 1 2.7478 -0.0002 7.4542 35 1 3.1997 -3.9514 6.3905 36 1 2.4185 -5.7207 4.8730 37 1 1.6633 -5.1565 2.5994 38 1 1.6868 -2.8227 1.8360 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:52 Heat of formation + Delta-G solvation = 45.329898 kcal Electronic energy + Delta-G solvation = -18721.996540 eV Core-core repulsion = 15950.056182 eV Total energy + Delta-G solvation = -2771.940357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18440 -37.96737 -37.01143 -35.54818 -33.24025 -31.53231 -30.59632 -29.87925 -27.64836 -27.19411 -24.34140 -23.71196 -22.56846 -21.00914 -20.89875 -18.72994 -17.72197 -17.02293 -16.67793 -16.24280 -15.91104 -15.57552 -15.19801 -14.65165 -14.40599 -14.05436 -13.96932 -13.58244 -13.35695 -13.29326 -13.05794 -12.97027 -12.84580 -12.64296 -12.43941 -12.28372 -12.08093 -11.94086 -11.74119 -11.56195 -11.21041 -10.71472 -10.62212 -9.96738 -9.70307 -8.34176 -8.20579 -6.39273 0.02081 0.44470 1.39638 1.40780 1.51400 1.63299 2.17494 2.43834 2.92146 3.06992 3.44060 3.72477 3.99363 4.04646 4.22570 4.28576 4.34145 4.48917 4.59684 4.64683 4.70166 4.88394 4.91300 4.96764 5.00462 5.05266 5.08877 5.18007 5.20991 5.36160 5.47471 5.49050 5.56077 5.58264 5.63935 5.75487 5.87183 6.07248 6.17052 6.38104 6.79460 7.32324 7.73584 8.83826 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027014 B = 0.005048 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.263125 B = 5545.932125 C = 6189.434133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.303 3.697 3 H 0.002 0.998 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.271 1.271 12 N -0.643 5.643 13 N -0.244 5.244 14 C 0.039 3.961 15 C -0.048 4.048 16 C -0.041 4.041 17 H 0.112 0.888 18 C -0.135 4.135 19 C -0.077 4.077 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.113 4.113 25 H 0.014 0.986 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.268 0.732 29 H 0.375 0.625 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -9.040 18.549 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.199 3.801 3 H 0.020 0.980 4 C -0.588 4.588 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.195 1.195 12 N -0.383 5.383 13 N -0.053 5.053 14 C -0.150 4.150 15 C -0.087 4.087 16 C -0.060 4.060 17 H 0.130 0.870 18 C -0.192 4.192 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.116 4.116 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.217 0.783 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.966 -7.808 17.813 19.849 hybrid contribution -0.086 -1.184 -1.373 1.815 sum 3.880 -8.992 16.440 19.136 Atomic orbital electron populations 1.22037 0.98977 0.98827 0.99646 1.18174 0.90156 0.91805 0.79957 0.98004 1.21432 1.32719 1.13465 0.91201 0.92634 1.25715 0.94764 0.95603 1.01862 1.70012 1.36665 1.23610 1.24793 0.85352 0.78737 0.78258 0.78032 1.19512 1.20283 1.19539 1.48910 1.75254 1.08637 1.05534 1.73977 1.09077 1.28202 0.94048 1.23980 1.04457 0.91317 0.95260 1.20814 1.01501 0.97901 0.88534 1.20480 1.01988 0.88744 0.94776 0.86999 1.21801 0.98536 1.03397 0.95443 1.20912 0.97595 0.95877 0.93584 1.20946 0.99712 0.90351 1.01172 1.21516 0.97728 1.00837 0.92779 1.21232 1.00441 0.94990 0.97850 1.21387 1.01416 0.94219 0.98796 1.20324 1.01476 0.93066 0.96724 0.96704 0.90882 0.95441 0.92253 0.78297 0.88822 0.88811 0.93924 0.90643 0.90246 0.82495 0.82348 0.84393 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 9.29 71.98 0.67 -6.58 16 2 C 0.30 16.96 3.23 44.24 0.14 17.10 16 3 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 4 C -0.55 -31.47 8.74 25.60 0.22 -31.25 16 5 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.64 -32.12 5.88 -172.51 -1.01 -33.14 16 13 N -0.24 -11.21 11.58 -42.57 -0.49 -11.71 16 14 C 0.04 1.47 7.44 45.41 0.34 1.80 16 15 C -0.05 -1.25 6.50 30.09 0.20 -1.06 16 16 C -0.04 -0.82 3.54 -11.22 -0.04 -0.86 16 17 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 18 C -0.13 -2.02 8.99 71.98 0.65 -1.37 16 19 C -0.08 -1.94 5.51 -19.45 -0.11 -2.04 16 20 C -0.10 -2.07 10.03 22.28 0.22 -1.85 16 21 C -0.11 -2.23 10.04 22.30 0.22 -2.01 16 22 C -0.13 -3.36 10.02 22.19 0.22 -3.14 16 23 C -0.14 -4.72 9.20 22.63 0.21 -4.52 16 24 C -0.11 -3.83 6.00 -20.08 -0.12 -3.95 16 25 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.37 17.86 4.62 -213.32 -0.98 16.88 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.24 7.68 -2.39 -0.02 2.22 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.10 3.84 5.28 -2.91 -0.02 3.83 16 Total: -1.00 -68.10 312.54 4.11 -63.99 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.07 Total: 25.94 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.28 Total: -38.09 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -1.26 Total: -97.56 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.10 4.11 -63.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.320 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds