Wall clock time and date at job start Mon Mar 30 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47050 * 2 1 4 4 C 1.50694 * 109.46983 * 119.99897 * 2 1 3 5 5 H 1.08001 * 120.00063 * 120.00486 * 4 2 1 6 6 C 1.37885 * 120.00433 * 300.00173 * 4 2 1 7 7 N 1.31514 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47037 * 90.00068 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99515 * 8 6 4 11 11 H 1.48493 * 109.47493 * 329.99740 * 8 6 4 12 12 N 1.46493 * 109.47071 * 240.00157 * 2 1 3 13 13 N 1.40094 * 120.00199 * 89.99785 * 12 2 1 14 14 C 1.29751 * 120.00121 * 173.80426 * 13 12 2 15 15 C 1.50962 * 125.97836 * 166.85189 * 14 13 12 16 16 C 1.53471 * 105.32373 * 179.91464 * 15 14 13 17 17 H 1.09000 * 109.89383 * 119.46507 * 16 15 14 18 18 C 1.53004 * 110.31108 * 240.99062 * 16 15 14 19 19 C 1.50990 * 106.36754 * 0.34418 * 16 15 14 20 20 C 1.38272 * 130.44990 * 179.75939 * 19 16 15 21 21 C 1.38239 * 120.32332 * 180.02562 * 20 19 16 22 22 C 1.38381 * 120.16112 * 0.02562 * 21 20 19 23 23 C 1.37740 * 120.15045 * 359.97438 * 22 21 20 24 24 C 1.39285 * 109.63856 * 359.77894 * 19 16 15 25 25 H 1.08999 * 109.46936 * 299.99466 * 1 2 3 26 26 H 1.08996 * 109.47380 * 60.00092 * 1 2 3 27 27 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99754 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00170 * 269.99806 * 12 2 1 30 30 H 1.09001 * 110.26855 * 299.00016 * 15 14 13 31 31 H 1.08998 * 110.27397 * 61.07329 * 15 14 13 32 32 H 1.08995 * 109.47089 * 177.07446 * 18 16 15 33 33 H 1.09001 * 109.47067 * 297.07559 * 18 16 15 34 34 H 1.08998 * 109.46468 * 57.07429 * 18 16 15 35 35 H 1.07997 * 119.83623 * 359.97438 * 20 19 16 36 36 H 1.08000 * 119.91432 * 179.97438 * 21 20 19 37 37 H 1.08009 * 119.92704 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.95917 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6905 -1.1961 13 7 2.2518 0.0299 -2.3747 14 6 2.7967 -0.5560 -3.3961 15 6 2.8578 -0.0111 -4.8027 16 6 3.6009 -1.0775 -5.6188 17 1 2.9581 -1.4480 -6.4173 18 6 4.8870 -0.4947 -6.2081 19 6 3.9307 -2.1950 -4.6585 20 6 4.5862 -3.3942 -4.8686 21 6 4.7768 -4.2780 -3.8228 22 6 4.3116 -3.9680 -2.5570 23 6 3.6568 -2.7770 -2.3329 24 6 3.4595 -1.8743 -3.3875 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1614 3.4844 29 1 2.1800 -1.6467 -1.1722 30 1 1.8515 0.1345 -5.1953 31 1 3.4104 0.9282 -4.8201 32 1 5.4292 -1.2760 -6.7407 33 1 4.6377 0.3104 -6.8993 34 1 5.5102 -0.1034 -5.4040 35 1 4.9503 -3.6419 -5.8547 36 1 5.2894 -5.2130 -3.9945 37 1 4.4630 -4.6611 -1.7425 38 1 3.2947 -2.5385 -1.3439 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807979226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:01 Heat of formation + Delta-G solvation = 61.263378 kcal Electronic energy + Delta-G solvation = -18732.096621 eV Core-core repulsion = 15960.847191 eV Total energy + Delta-G solvation = -2771.249430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03975 -36.44061 -35.74724 -33.80444 -31.50646 -30.21189 -29.53756 -28.45030 -26.12060 -25.19556 -23.22903 -22.57183 -20.79569 -19.81974 -19.48300 -17.06583 -16.06784 -15.60528 -15.25144 -14.96089 -14.77285 -14.01986 -13.88592 -13.26543 -13.01354 -12.55609 -12.46462 -12.36025 -12.20362 -11.96172 -11.76933 -11.36351 -11.19490 -11.04648 -10.97756 -10.79846 -10.61150 -10.30417 -10.21296 -10.17952 -9.41163 -9.04736 -8.73727 -8.59762 -8.47470 -6.70561 -6.14637 -4.23739 1.23582 1.54805 2.96926 3.23398 3.29737 3.31953 3.74639 4.07890 4.34817 4.54018 4.82049 5.08689 5.13960 5.15888 5.17323 5.24305 5.41924 5.59357 5.61914 5.65855 5.78659 5.95728 5.99836 6.11915 6.18134 6.26194 6.31379 6.55967 6.68871 6.71166 6.80262 7.01607 7.10932 7.15355 7.15916 7.56584 7.77169 7.85961 8.13638 8.29173 8.83251 9.31475 9.43235 10.90689 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.005290 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.686224 B = 5291.561519 C = 6105.733965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.293 3.707 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.621 5.621 13 N -0.182 5.182 14 C 0.012 3.988 15 C -0.042 4.042 16 C -0.047 4.047 17 H 0.085 0.915 18 C -0.139 4.139 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.063 4.063 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.373 0.627 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -6.246 -14.926 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.191 3.809 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.361 5.361 13 N 0.005 4.995 14 C -0.175 4.175 15 C -0.081 4.081 16 C -0.066 4.066 17 H 0.103 0.897 18 C -0.196 4.196 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.066 4.066 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.215 0.785 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.331 -5.063 -14.248 16.033 hybrid contribution 0.741 -1.681 0.954 2.070 sum 6.072 -6.744 -13.294 16.096 Atomic orbital electron populations 1.22171 0.98745 0.99229 1.00593 1.18588 0.90407 0.93566 0.78380 0.94080 1.21235 1.32330 1.13294 0.90312 0.92374 1.24851 0.94757 0.94983 0.98920 1.69891 1.35912 1.22491 1.23927 0.86435 0.78634 0.79894 0.82099 1.20514 1.20964 1.19846 1.49439 1.70585 1.07872 1.08183 1.73993 1.07551 1.24587 0.93355 1.22952 1.05735 0.93404 0.95455 1.20503 1.00874 0.97966 0.88769 1.20343 0.97116 0.92732 0.96383 0.89718 1.21816 0.96568 1.00576 1.00682 1.20464 0.98586 0.95030 0.94830 1.20461 0.99773 0.93297 0.98886 1.21010 1.01188 0.99433 0.93009 1.20971 0.98493 0.96726 0.97162 1.21405 0.99940 0.93888 0.98476 1.20159 0.98036 0.94520 0.93860 0.89163 0.96669 0.95539 0.92537 0.78526 0.90105 0.89973 0.92625 0.92185 0.92271 0.86514 0.86214 0.85989 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.29 37.16 0.35 -3.37 16 2 C 0.29 7.63 3.23 -69.09 -0.22 7.41 16 3 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.53 -14.48 8.74 -34.44 -0.30 -14.78 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.62 -14.40 5.88 -5.89 -0.03 -14.43 16 13 N -0.18 -3.94 11.58 35.19 0.41 -3.53 16 14 C 0.01 0.22 7.44 -79.54 -0.59 -0.37 16 15 C -0.04 -0.57 6.52 -27.51 -0.18 -0.75 16 16 C -0.05 -0.55 3.52 -91.38 -0.32 -0.87 16 17 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.14 -1.35 9.00 37.16 0.33 -1.01 16 19 C -0.09 -1.22 5.50 -104.08 -0.57 -1.79 16 20 C -0.11 -1.32 10.02 -39.57 -0.40 -1.71 16 21 C -0.13 -1.58 10.04 -39.53 -0.40 -1.98 16 22 C -0.12 -1.65 10.02 -39.71 -0.40 -2.04 16 23 C -0.12 -1.99 9.20 -39.02 -0.36 -2.35 16 24 C -0.06 -1.08 6.00 -104.96 -0.63 -1.71 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.37 8.20 4.62 -182.60 -0.84 7.36 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.13 2.37 5.28 -52.49 -0.28 2.10 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -29.20 312.54 -9.12 -38.33 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.03 Total: 6.77 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -3.79 Total: -23.57 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.00 Total: -42.10 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.20 -9.12 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.589 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds