Wall clock time and date at job start Mon Mar 30 2020 07:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47050 * 2 1 4 4 C 1.50694 * 109.46983 * 119.99897 * 2 1 3 5 5 H 1.08001 * 120.00063 * 120.00486 * 4 2 1 6 6 C 1.37885 * 120.00433 * 300.00173 * 4 2 1 7 7 N 1.31514 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47037 * 90.00068 * 8 6 4 10 10 H 1.48498 * 109.46974 * 209.99515 * 8 6 4 11 11 H 1.48493 * 109.47493 * 329.99740 * 8 6 4 12 12 N 1.46493 * 109.47071 * 240.00157 * 2 1 3 13 13 N 1.40094 * 120.00199 * 89.99785 * 12 2 1 14 14 C 1.29751 * 120.00121 * 173.80426 * 13 12 2 15 15 C 1.50962 * 125.97836 * 166.85189 * 14 13 12 16 16 C 1.53471 * 105.32373 * 179.91464 * 15 14 13 17 17 H 1.09000 * 109.89383 * 119.46507 * 16 15 14 18 18 C 1.53004 * 110.31108 * 240.99062 * 16 15 14 19 19 C 1.50990 * 106.36754 * 0.34418 * 16 15 14 20 20 C 1.38272 * 130.44990 * 179.75939 * 19 16 15 21 21 C 1.38239 * 120.32332 * 180.02562 * 20 19 16 22 22 C 1.38381 * 120.16112 * 0.02562 * 21 20 19 23 23 C 1.37740 * 120.15045 * 359.97438 * 22 21 20 24 24 C 1.39285 * 109.63856 * 359.77894 * 19 16 15 25 25 H 1.08999 * 109.46936 * 299.99466 * 1 2 3 26 26 H 1.08996 * 109.47380 * 60.00092 * 1 2 3 27 27 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99754 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00170 * 269.99806 * 12 2 1 30 30 H 1.09001 * 110.26855 * 299.00016 * 15 14 13 31 31 H 1.08998 * 110.27397 * 61.07329 * 15 14 13 32 32 H 1.08995 * 109.47089 * 177.07446 * 18 16 15 33 33 H 1.09001 * 109.47067 * 297.07559 * 18 16 15 34 34 H 1.08998 * 109.46468 * 57.07429 * 18 16 15 35 35 H 1.07997 * 119.83623 * 359.97438 * 20 19 16 36 36 H 1.08000 * 119.91432 * 179.97438 * 21 20 19 37 37 H 1.08009 * 119.92704 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.95917 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6905 -1.1961 13 7 2.2518 0.0299 -2.3747 14 6 2.7967 -0.5560 -3.3961 15 6 2.8578 -0.0111 -4.8027 16 6 3.6009 -1.0775 -5.6188 17 1 2.9581 -1.4480 -6.4173 18 6 4.8870 -0.4947 -6.2081 19 6 3.9307 -2.1950 -4.6585 20 6 4.5862 -3.3942 -4.8686 21 6 4.7768 -4.2780 -3.8228 22 6 4.3116 -3.9680 -2.5570 23 6 3.6568 -2.7770 -2.3329 24 6 3.4595 -1.8743 -3.3875 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1614 3.4844 29 1 2.1800 -1.6467 -1.1722 30 1 1.8515 0.1345 -5.1953 31 1 3.4104 0.9282 -4.8201 32 1 5.4292 -1.2760 -6.7407 33 1 4.6377 0.3104 -6.8993 34 1 5.5102 -0.1034 -5.4040 35 1 4.9503 -3.6419 -5.8547 36 1 5.2894 -5.2130 -3.9945 37 1 4.4630 -4.6611 -1.7425 38 1 3.2947 -2.5385 -1.3439 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:55 Heat of formation + Delta-G solvation = 45.243736 kcal Electronic energy + Delta-G solvation = -18732.791285 eV Core-core repulsion = 15960.847191 eV Total energy + Delta-G solvation = -2771.944093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19140 -37.96046 -37.01156 -35.54701 -33.24408 -31.52520 -30.58989 -29.88253 -27.61631 -27.20590 -24.34516 -23.70994 -22.55686 -21.02369 -20.89554 -18.71567 -17.73446 -17.01842 -16.67588 -16.24791 -15.90889 -15.54507 -15.20291 -14.63243 -14.37395 -14.23251 -13.80476 -13.58352 -13.43126 -13.25401 -13.04543 -12.93618 -12.81850 -12.79670 -12.30877 -12.27896 -12.08911 -11.94196 -11.71936 -11.55805 -11.17319 -10.79251 -10.59577 -9.96322 -9.69987 -8.36931 -8.17856 -6.39715 0.02067 0.44394 1.38774 1.39566 1.50397 1.63371 2.16632 2.43724 2.92115 3.06391 3.44237 3.73033 3.99332 4.05519 4.22269 4.28988 4.34239 4.49340 4.59798 4.65712 4.72130 4.91245 4.93803 4.97184 5.02093 5.06874 5.10589 5.17874 5.21290 5.36893 5.47668 5.49238 5.55629 5.58766 5.63850 5.78442 5.88097 6.07346 6.16755 6.37874 6.79217 7.31897 7.73661 8.83312 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.005290 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.686224 B = 5291.561519 C = 6105.733965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.303 3.697 3 H -0.001 1.001 4 C -0.552 4.552 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.267 1.267 12 N -0.643 5.643 13 N -0.243 5.243 14 C 0.040 3.960 15 C -0.048 4.048 16 C -0.042 4.042 17 H 0.113 0.887 18 C -0.135 4.135 19 C -0.076 4.076 20 C -0.104 4.104 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.114 4.114 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.027 0.973 28 H 0.268 0.732 29 H 0.375 0.625 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -8.392 -17.622 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.199 3.801 3 H 0.017 0.983 4 C -0.591 4.591 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.191 1.191 12 N -0.384 5.384 13 N -0.053 5.053 14 C -0.150 4.150 15 C -0.087 4.087 16 C -0.060 4.060 17 H 0.131 0.869 18 C -0.192 4.192 19 C -0.079 4.079 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.116 4.116 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.217 0.783 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.155 0.845 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.067 -7.209 -16.961 19.738 hybrid contribution 0.342 -1.116 1.536 1.929 sum 7.409 -8.325 -15.425 19.030 Atomic orbital electron populations 1.21980 0.98512 0.98930 0.99783 1.18168 0.90579 0.91476 0.79852 0.98349 1.21488 1.32722 1.13465 0.91376 0.92699 1.25713 0.94749 0.95633 1.01853 1.70014 1.36611 1.23601 1.24775 0.85375 0.78110 0.78880 0.78169 1.20131 1.20063 1.19139 1.48921 1.73551 1.07632 1.08266 1.73979 1.11968 1.25487 0.93832 1.24000 1.01081 0.93818 0.96091 1.20817 1.02485 0.99230 0.86148 1.20442 0.98377 0.91108 0.96072 0.86892 1.21805 0.95165 1.01748 1.00504 1.20872 0.97142 0.96136 0.93753 1.20946 0.98427 0.92087 1.00719 1.21512 0.99044 1.00531 0.91741 1.21226 0.98431 0.95881 0.99050 1.21409 1.01336 0.95630 0.97502 1.20327 1.00772 0.94796 0.95737 0.91054 0.96138 0.95382 0.92259 0.78334 0.88577 0.88915 0.90663 0.90181 0.94029 0.82443 0.82354 0.84542 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.29 71.98 0.67 -6.39 16 2 C 0.30 16.96 3.23 44.25 0.14 17.10 16 3 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 4 C -0.55 -31.61 8.74 25.60 0.22 -31.39 16 5 H 0.05 3.09 7.79 -2.91 -0.02 3.06 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -52.98 11.32 21.45 0.24 -52.73 16 8 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.64 -32.13 5.88 -172.54 -1.01 -33.14 16 13 N -0.24 -11.18 11.58 -42.56 -0.49 -11.67 16 14 C 0.04 1.48 7.44 45.41 0.34 1.81 16 15 C -0.05 -1.22 6.52 30.09 0.20 -1.03 16 16 C -0.04 -0.82 3.52 -11.29 -0.04 -0.86 16 17 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 18 C -0.14 -2.05 9.00 71.98 0.65 -1.40 16 19 C -0.08 -1.93 5.50 -19.51 -0.11 -2.04 16 20 C -0.10 -2.09 10.02 22.28 0.22 -1.87 16 21 C -0.11 -2.27 10.04 22.30 0.22 -2.04 16 22 C -0.13 -3.47 10.02 22.19 0.22 -3.25 16 23 C -0.14 -4.84 9.20 22.63 0.21 -4.63 16 24 C -0.11 -3.88 6.00 -20.09 -0.12 -4.00 16 25 H 0.07 4.03 6.07 -2.39 -0.01 4.01 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 29 H 0.37 17.87 4.62 -213.32 -0.98 16.89 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 2.22 7.69 -2.39 -0.02 2.20 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.10 3.94 5.28 -2.91 -0.02 3.93 16 Total: -1.00 -68.17 312.54 4.11 -64.06 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.07 Total: 26.06 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 3.28 Total: -38.35 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -1.26 Total: -97.55 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.17 4.11 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.308 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds