Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 O 1.45199 * 109.47075 * 64.99826 * 3 2 1 14 14 C 1.34225 * 117.00128 * 270.00075 * 13 3 2 15 15 O 1.20828 * 119.99812 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00074 * 180.02562 * 14 13 3 17 17 F 1.39902 * 109.47462 * 54.99638 * 16 14 13 18 18 C 1.53003 * 109.46846 * 294.99549 * 16 14 13 19 19 C 1.53002 * 109.46828 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47090 * 60.00384 * 19 18 16 21 21 C 1.53003 * 109.46972 * 299.99528 * 20 19 18 22 22 C 1.53002 * 109.47020 * 174.99965 * 16 14 13 23 23 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 27 27 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47236 * 300.00084 * 18 16 14 30 30 H 1.08995 * 109.46939 * 60.00253 * 18 16 14 31 31 H 1.09002 * 109.47219 * 300.00019 * 19 18 16 32 32 H 1.08999 * 109.46458 * 180.02562 * 19 18 16 33 33 H 1.08998 * 109.46665 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.47158 * 59.99383 * 20 19 18 35 35 H 1.09002 * 109.47236 * 300.00303 * 21 20 19 36 36 H 1.08995 * 109.46939 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46780 * 299.99167 * 22 16 14 38 38 H 1.08995 * 109.47681 * 59.99920 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 8 1.6559 2.0916 1.2407 14 6 0.4728 2.7254 1.2559 15 8 -0.2188 2.7377 0.2652 16 6 0.0075 3.4226 2.5084 17 9 0.9817 4.3374 2.9222 18 6 -0.2227 2.3883 3.6122 19 6 -0.6957 3.0961 4.8835 20 6 -2.0035 3.8371 4.5982 21 6 -1.7733 4.8713 3.4944 22 6 -1.3002 4.1640 2.2235 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0607 -2.9502 29 1 -0.9817 1.6756 3.2897 30 1 0.7089 1.8602 3.8151 31 1 0.0631 3.8091 5.2061 32 1 -0.8592 2.3593 5.6699 33 1 -2.3406 4.3409 5.5041 34 1 -2.7621 3.1241 4.2755 35 1 -1.0146 5.5843 3.8170 36 1 -2.7049 5.3995 3.2915 37 1 -1.1362 4.9008 1.4371 38 1 -2.0592 3.4513 1.9011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810710668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = -165.627099 kcal Electronic energy + Delta-G solvation = -20639.282758 eV Core-core repulsion = 17395.132643 eV Total energy + Delta-G solvation = -3244.150115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.69040 -39.78396 -37.59835 -35.83758 -33.55115 -31.45884 -30.98258 -30.67127 -27.33546 -24.33814 -23.08129 -22.78824 -20.92231 -19.78840 -19.40584 -17.51490 -16.74551 -16.20193 -15.88187 -15.31587 -14.92835 -14.66440 -14.53606 -13.60783 -13.48688 -13.30106 -12.91198 -12.63745 -12.36045 -12.25899 -11.97391 -11.83008 -11.51487 -11.33205 -11.20368 -11.13682 -10.98627 -10.76908 -10.66961 -10.63979 -10.29009 -10.12435 -9.82505 -9.52083 -9.39376 -8.83777 -8.47950 -6.20139 -4.26973 2.74537 3.23189 3.27475 3.32240 3.41797 4.30595 4.40035 4.44907 4.64347 4.92555 4.98549 5.08986 5.12034 5.24215 5.36851 5.52028 5.54626 5.66300 5.91490 5.92315 5.95618 6.03288 6.14378 6.16987 6.17522 6.24840 6.33717 6.40004 6.80964 6.89628 7.11486 7.17082 7.58566 7.69372 7.87547 8.12116 8.52201 8.84585 9.38240 10.86791 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.005682 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.467326 B = 4926.831672 C = 5233.866107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.219 3.781 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.343 6.343 14 C 0.438 3.562 15 O -0.500 6.500 16 C 0.138 3.862 17 F -0.187 7.187 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.127 4.127 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.043 0.957 28 H 0.266 0.734 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 4.490 11.514 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.166 3.834 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.259 6.259 14 C 0.278 3.722 15 O -0.390 6.390 16 C 0.118 3.882 17 F -0.167 7.167 18 C -0.177 4.177 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.164 4.164 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.610 4.386 11.018 15.264 hybrid contribution 0.995 -0.085 -0.370 1.065 sum -8.615 4.301 10.648 14.356 Atomic orbital electron populations 1.21872 0.98418 0.99107 1.00652 1.22026 0.92595 0.99235 1.03513 1.20768 0.95277 0.88803 0.78503 0.93479 1.21083 0.89562 1.38856 1.06331 0.91185 1.24884 0.99319 0.94709 0.95003 1.69894 1.35338 1.37944 1.09470 0.86222 0.83811 0.77885 0.78274 1.19423 1.20686 1.20721 1.86520 1.33414 1.61709 1.44235 1.23539 0.81628 0.77829 0.89180 1.90622 1.55353 1.58221 1.34756 1.20793 0.87247 0.88365 0.91746 1.92891 1.64709 1.67948 1.91196 1.22122 1.04066 0.97206 0.94259 1.21518 0.97668 0.99796 0.96586 1.21602 0.97588 0.98212 0.98626 1.21539 1.01676 0.98157 0.94369 1.21951 0.94738 1.00733 0.99006 0.94652 0.95111 0.92770 0.87193 0.93868 0.92419 0.89757 0.89184 0.91021 0.91055 0.91610 0.91708 0.91175 0.91087 0.89993 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.86 2.25 -27.88 -0.06 5.80 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.72 8.90 -34.44 -0.31 -15.02 16 6 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 O -0.34 -8.34 9.80 -39.25 -0.38 -8.72 16 14 C 0.44 9.28 5.38 36.01 0.19 9.48 16 15 O -0.50 -11.42 13.13 -18.75 -0.25 -11.66 16 16 C 0.14 2.26 1.16 -91.77 -0.11 2.16 16 17 F -0.19 -3.29 15.76 2.25 0.04 -3.26 16 18 C -0.14 -1.88 4.98 -26.73 -0.13 -2.02 16 19 C -0.12 -1.25 5.80 -26.73 -0.16 -1.40 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 21 C -0.12 -1.26 5.80 -26.75 -0.16 -1.41 16 22 C -0.13 -1.72 4.30 -26.76 -0.12 -1.84 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 25 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 26 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.18 8.05 -51.93 -0.42 0.77 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -29.77 304.69 -7.30 -37.07 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.98 Total: 0.48 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.92 Total: -10.19 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.63 Total: -20.38 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.77 -7.30 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810710668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.557 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds