Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 O 1.45199 * 109.47075 * 64.99826 * 3 2 1 14 14 C 1.34225 * 117.00128 * 270.00075 * 13 3 2 15 15 O 1.20828 * 119.99812 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00074 * 180.02562 * 14 13 3 17 17 F 1.39902 * 109.47462 * 54.99638 * 16 14 13 18 18 C 1.53003 * 109.46846 * 294.99549 * 16 14 13 19 19 C 1.53002 * 109.46828 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47090 * 60.00384 * 19 18 16 21 21 C 1.53003 * 109.46972 * 299.99528 * 20 19 18 22 22 C 1.53002 * 109.47020 * 174.99965 * 16 14 13 23 23 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 27 27 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47236 * 300.00084 * 18 16 14 30 30 H 1.08995 * 109.46939 * 60.00253 * 18 16 14 31 31 H 1.09002 * 109.47219 * 300.00019 * 19 18 16 32 32 H 1.08999 * 109.46458 * 180.02562 * 19 18 16 33 33 H 1.08998 * 109.46665 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.47158 * 59.99383 * 20 19 18 35 35 H 1.09002 * 109.47236 * 300.00303 * 21 20 19 36 36 H 1.08995 * 109.46939 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46780 * 299.99167 * 22 16 14 38 38 H 1.08995 * 109.47681 * 59.99920 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 8 1.6559 2.0916 1.2407 14 6 0.4728 2.7254 1.2559 15 8 -0.2188 2.7377 0.2652 16 6 0.0075 3.4226 2.5084 17 9 0.9817 4.3374 2.9222 18 6 -0.2227 2.3883 3.6122 19 6 -0.6957 3.0961 4.8835 20 6 -2.0035 3.8371 4.5982 21 6 -1.7733 4.8713 3.4944 22 6 -1.3002 4.1640 2.2235 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0607 -2.9502 29 1 -0.9817 1.6756 3.2897 30 1 0.7089 1.8602 3.8151 31 1 0.0631 3.8091 5.2061 32 1 -0.8592 2.3593 5.6699 33 1 -2.3406 4.3409 5.5041 34 1 -2.7621 3.1241 4.2755 35 1 -1.0146 5.5843 3.8170 36 1 -2.7049 5.3995 3.2915 37 1 -1.1362 4.9008 1.4371 38 1 -2.0592 3.4513 1.9011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810710668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = -181.081310 kcal Electronic energy + Delta-G solvation = -20639.952903 eV Core-core repulsion = 17395.132643 eV Total energy + Delta-G solvation = -3244.820260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.08039 -41.54843 -38.74567 -37.60393 -35.58369 -33.42977 -31.99318 -31.80277 -29.35693 -25.90698 -24.81119 -23.80566 -22.47094 -21.43200 -20.67616 -19.24586 -18.63033 -17.87009 -17.45902 -16.88010 -16.40357 -16.36776 -15.62162 -15.14229 -14.85122 -14.52148 -14.47024 -14.28891 -13.71066 -13.43544 -13.35824 -13.34291 -13.19477 -13.13300 -12.88882 -12.85163 -12.58292 -12.17245 -12.13077 -11.83454 -11.76664 -11.49486 -11.46186 -11.11063 -11.02002 -10.88270 -10.57366 -8.31626 -6.48696 1.03662 1.39173 1.39768 1.53056 1.74391 2.36015 2.97794 3.21733 3.29299 3.52134 3.66116 4.06253 4.10980 4.22042 4.32213 4.32995 4.35586 4.42460 4.50984 4.60208 4.75644 4.78362 4.95213 5.00155 5.04767 5.13383 5.15402 5.16501 5.26402 5.27353 5.33305 5.46335 5.49899 5.61836 5.87663 6.03984 6.52577 6.80133 7.22157 8.75381 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.005682 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.467326 B = 4926.831672 C = 5233.866107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.007 0.993 5 C -0.553 4.553 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.275 1.275 13 O -0.356 6.356 14 C 0.428 3.572 15 O -0.520 6.520 16 C 0.139 3.861 17 F -0.195 7.195 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.124 4.124 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.272 0.728 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 4.435 13.206 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.200 1.200 13 O -0.272 6.272 14 C 0.270 3.730 15 O -0.410 6.410 16 C 0.120 3.880 17 F -0.176 7.176 18 C -0.175 4.175 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.162 4.162 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.318 4.338 12.722 16.945 hybrid contribution 1.176 -0.034 -0.937 1.504 sum -9.142 4.304 11.786 15.525 Atomic orbital electron populations 1.21732 0.95999 1.00921 1.00162 1.21860 0.94730 0.97566 1.02517 1.20491 0.94723 0.89592 0.78317 0.97548 1.21334 0.90488 1.40172 1.07028 0.92041 1.25777 1.04277 0.93720 0.94215 1.70004 1.37391 1.37816 1.09814 0.85171 0.77635 0.78493 0.78342 1.19099 1.19310 1.19993 1.86514 1.35361 1.62439 1.42885 1.24690 0.80314 0.77174 0.90823 1.90599 1.55552 1.58811 1.36052 1.21113 0.87702 0.88975 0.90235 1.92872 1.65426 1.68244 1.91046 1.22196 1.03931 0.96712 0.94701 1.21550 0.98201 1.00144 0.95219 1.21628 0.96965 0.98025 0.99100 1.21570 1.02443 0.98274 0.92962 1.22021 0.93117 1.00434 1.00620 0.91584 0.94292 0.94500 0.89389 0.93416 0.91891 0.88730 0.90585 0.91589 0.88714 0.89147 0.90683 0.91620 0.88773 0.91436 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.57 71.98 0.62 -5.02 16 2 C -0.13 -6.50 5.49 30.59 0.17 -6.33 16 3 C 0.22 12.37 2.25 29.85 0.07 12.43 16 4 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -32.25 8.90 25.60 0.23 -32.02 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 O -0.36 -17.91 9.80 -51.37 -0.50 -18.41 16 14 C 0.43 18.61 5.38 71.24 0.38 18.99 16 15 O -0.52 -24.51 13.13 21.96 0.29 -24.22 16 16 C 0.14 4.53 1.16 -11.54 -0.01 4.52 16 17 F -0.20 -6.90 15.76 44.97 0.71 -6.19 16 18 C -0.14 -3.55 4.98 30.60 0.15 -3.40 16 19 C -0.11 -2.08 5.80 30.60 0.18 -1.90 16 20 C -0.12 -1.79 5.92 30.60 0.18 -1.60 16 21 C -0.12 -2.11 5.80 30.58 0.18 -1.93 16 22 C -0.12 -3.25 4.30 30.58 0.13 -3.12 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.04 1.58 6.06 -2.39 -0.01 1.56 16 25 H 0.04 1.68 7.80 -2.39 -0.02 1.67 16 26 H 0.09 4.84 5.95 -2.39 -0.01 4.83 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 1.30 7.80 -2.39 -0.02 1.28 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.09 2.37 8.05 -2.39 -0.02 2.35 16 Total: -1.00 -66.28 304.69 6.51 -59.77 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.03 Total: 13.51 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 2.72 Total: -17.81 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.24 Total: -52.23 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.22 Total: -42.63 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.71 Total: -6.19 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.28 6.51 -59.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810710668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.309 kcal (2) G-P(sol) polarization free energy of solvation -66.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds