Wall clock time and date at job start Mon Mar 30 2020 08:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.30005 * 119.99690 * 180.02562 * 13 12 2 15 15 C 1.46733 * 120.00077 * 180.02562 * 14 13 12 16 16 N 1.30527 * 125.47083 * 180.02562 * 15 14 13 17 17 C 1.31322 * 116.97616 * 179.97438 * 16 15 14 18 18 C 1.33869 * 115.83692 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 125.87015 * 180.02562 * 18 17 16 20 20 S 1.76169 * 125.46795 * 359.68815 * 15 14 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 26 26 H 1.07998 * 120.00097 * 359.97438 * 14 13 12 27 27 H 1.08002 * 122.08079 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6849 -0.5830 -3.4363 15 6 2.9300 0.1717 -4.6706 16 7 3.3623 -0.3333 -5.7939 17 6 3.5230 0.4979 -6.7979 18 6 3.2211 1.7782 -6.5494 19 17 3.3359 3.0887 -7.6821 20 16 2.6800 1.9033 -4.8767 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7081 1.1610 3.4844 25 1 2.1800 -1.6468 -1.1721 26 1 2.8649 -1.6475 -3.4095 27 1 3.8767 0.1690 -7.7639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883667.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:19 Heat of formation + Delta-G solvation = 79.361320 kcal Electronic energy + Delta-G solvation = -13912.332826 eV Core-core repulsion = 11245.096104 eV Total energy + Delta-G solvation = -2667.236723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.42545 -36.97200 -36.68819 -34.26201 -31.81306 -30.00986 -27.76081 -25.48170 -25.04603 -21.97762 -20.49400 -19.73559 -18.36344 -16.85391 -16.26179 -15.70684 -15.11132 -14.74656 -14.22574 -13.80374 -13.34982 -12.88222 -12.62931 -12.24322 -12.18820 -11.57909 -11.14020 -10.97383 -10.85926 -10.75926 -10.39146 -10.32775 -10.10997 -9.62306 -9.26326 -9.21070 -8.95209 -8.60206 -7.13857 -6.24661 -4.34165 0.30753 0.87999 1.63634 2.13033 2.24370 3.17930 3.19976 3.23088 3.25439 3.31574 4.24503 4.49397 5.08309 5.11522 5.23593 5.71305 6.01153 6.28399 6.70355 6.84972 6.97361 7.39814 7.58251 7.63366 7.67006 7.93608 8.09423 8.69943 8.92670 9.33023 10.81208 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.049540 B = 0.003606 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.061487 B = 7763.751141 C = 7997.101143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.292 3.708 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.594 5.594 13 N -0.169 5.169 14 C 0.000 4.000 15 C 0.167 3.833 16 N -0.472 5.472 17 C 0.067 3.933 18 C -0.216 4.216 19 Cl -0.008 7.008 20 S 0.167 5.833 21 H 0.029 0.971 22 H 0.014 0.986 23 H 0.093 0.907 24 H 0.267 0.733 25 H 0.377 0.623 26 H 0.132 0.868 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 1.389 -15.153 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.191 3.809 3 H 0.065 0.935 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.332 5.332 13 N 0.011 4.989 14 C -0.208 4.208 15 C -0.107 4.107 16 N -0.190 5.190 17 C -0.089 4.089 18 C -0.366 4.366 19 Cl 0.020 6.980 20 S 0.419 5.581 21 H 0.048 0.952 22 H 0.034 0.966 23 H 0.112 0.888 24 H 0.077 0.923 25 H 0.214 0.786 26 H 0.149 0.851 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.352 2.872 -13.918 14.405 hybrid contribution 0.873 -1.764 -0.340 1.997 sum 3.225 1.108 -14.258 14.660 Atomic orbital electron populations 1.22221 0.98433 0.99551 1.00904 1.18749 0.90537 0.93839 0.77810 0.93533 1.21138 1.32818 1.13568 0.89947 0.92005 1.24855 0.94682 0.94959 0.99026 1.69866 1.35593 1.22363 1.24295 0.86436 0.79218 0.79588 0.81477 1.20094 1.21006 1.20083 1.49303 1.69473 1.08341 1.06062 1.73929 1.02372 1.28494 0.94154 1.22118 1.12165 0.97177 0.89349 1.25207 0.98729 0.91995 0.94813 1.66884 1.17912 1.35625 0.98582 1.21628 1.00939 0.86946 0.99401 1.26833 1.17569 0.94467 0.97686 1.98347 1.96941 1.45186 1.57492 1.85567 1.60762 1.09748 1.01987 0.95221 0.96646 0.88814 0.92312 0.78647 0.85081 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.29 37.16 0.35 -3.17 15 2 C 0.29 6.98 3.23 -69.08 -0.22 6.76 15 3 H 0.05 1.24 8.14 -51.93 -0.42 0.81 15 4 C -0.54 -13.62 8.74 -34.44 -0.30 -13.92 15 5 H 0.06 1.53 7.79 -52.49 -0.41 1.12 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 15 7 N -0.88 -23.64 11.32 55.43 0.63 -23.01 15 8 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 15 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 12 N -0.59 -12.11 6.10 -5.88 -0.04 -12.15 15 13 N -0.17 -3.20 11.27 32.02 0.36 -2.84 15 14 C 0.00 0.01 11.05 -14.89 -0.16 -0.16 15 15 C 0.17 2.56 7.48 -14.68 -0.11 2.45 15 16 N -0.47 -6.91 10.60 -11.60 -0.12 -7.03 15 17 C 0.07 0.83 11.22 -19.30 -0.22 0.61 15 18 C -0.22 -2.69 7.20 29.20 0.21 -2.48 15 19 Cl -0.01 -0.08 29.30 -51.86 -1.52 -1.60 15 20 S 0.17 2.35 23.19 -107.50 -2.49 -0.14 15 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.09 2.36 6.07 -51.93 -0.32 2.04 15 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 25 H 0.38 6.98 8.58 -182.60 -1.57 5.41 15 26 H 0.13 1.91 8.03 -52.49 -0.42 1.49 15 27 H 0.18 1.68 8.06 -52.49 -0.42 1.25 15 LS Contribution 277.41 15.07 4.18 4.18 Total: -1.00 -26.16 277.41 -8.12 -34.28 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.54 Total: 1.57 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.55 Total: -8.25 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.83 Total: -45.03 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.49 Total: -0.14 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.16 -8.12 -34.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883667.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.638 kcal (2) G-P(sol) polarization free energy of solvation -26.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds