Wall clock time and date at job start Mon Mar 30 2020 07:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 N 1.40095 * 120.00390 * 89.99481 * 12 2 1 14 14 C 1.29747 * 120.00348 * 179.97438 * 13 12 2 15 15 C 1.47494 * 120.00357 * 180.02562 * 14 13 12 16 16 C 1.39691 * 120.15254 * 359.72378 * 15 14 13 17 17 C 1.37921 * 119.83978 * 179.74527 * 16 15 14 18 18 C 1.38385 * 120.15418 * 0.55669 * 17 16 15 19 19 C 1.38349 * 120.31750 * 359.69775 * 18 17 16 20 20 C 1.50703 * 119.92435 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49846 * 8.64337 * 20 19 18 22 22 C 1.52995 * 59.99988 * 252.50959 * 21 20 19 23 23 C 1.37956 * 120.15400 * 0.02562 * 19 18 17 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99858 * 270.00212 * 12 2 1 29 29 H 1.08009 * 119.99519 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.08346 * 0.02834 * 16 15 14 31 31 H 1.07996 * 119.92081 * 180.27908 * 17 16 15 32 32 H 1.08003 * 119.84348 * 179.71989 * 18 17 16 33 33 H 1.08999 * 115.54891 * 154.35306 * 20 19 18 34 34 H 1.09000 * 117.49342 * 0.02562 * 21 20 19 35 35 H 1.09000 * 117.49997 * 145.01667 * 21 20 19 36 36 H 1.08993 * 117.50110 * 252.50852 * 22 21 20 37 37 H 1.09001 * 117.51862 * 107.48178 * 22 21 20 38 38 H 1.08003 * 120.07951 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0183 -0.6904 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6847 -0.5813 -3.4341 15 6 2.9310 0.1774 -4.6747 16 6 2.6937 1.5534 -4.7145 17 6 2.9312 2.2575 -5.8765 18 6 3.3925 1.6019 -7.0045 19 6 3.6247 0.2384 -6.9739 20 6 4.1266 -0.4667 -8.2077 21 6 4.5515 0.4013 -9.3938 22 6 3.2525 -0.4042 -9.4618 23 6 3.3969 -0.4776 -5.8168 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8912 -0.5369 4.4374 28 1 2.1800 -1.6466 -1.1723 29 1 2.8648 -1.6459 -3.4074 30 1 2.3295 2.0656 -3.8362 31 1 2.7525 3.3221 -5.9074 32 1 3.5725 2.1574 -7.9131 33 1 4.6862 -1.3849 -8.0295 34 1 4.4684 1.4823 -9.2815 35 1 5.3910 0.0544 -9.9962 36 1 3.2374 -1.2810 -10.1090 37 1 2.3143 0.1466 -9.3945 38 1 3.5790 -1.5419 -5.7942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817325416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:53 Heat of formation + Delta-G solvation = 91.731575 kcal Electronic energy + Delta-G solvation = -17686.075981 eV Core-core repulsion = 14916.147752 eV Total energy + Delta-G solvation = -2769.928229 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61180 -37.20636 -36.30682 -34.12950 -31.98240 -30.93257 -30.38448 -27.55742 -25.16915 -24.20580 -22.91058 -22.40187 -21.57155 -20.39752 -19.23815 -17.30238 -16.74727 -16.14563 -15.50771 -15.47759 -14.87683 -14.35341 -13.92984 -13.64543 -13.31155 -13.09896 -12.97091 -12.36121 -12.26849 -12.23934 -11.90348 -11.59226 -11.26871 -11.12440 -10.95300 -10.80732 -10.65350 -10.53267 -10.23074 -9.73631 -9.57298 -9.23826 -8.91797 -8.68791 -8.51199 -6.97862 -6.22526 -4.25045 1.15617 1.46343 2.89932 3.20367 3.31520 3.33631 3.58384 3.64633 4.14009 4.28104 4.41392 4.66451 4.78605 4.90026 4.98600 5.11537 5.17719 5.22891 5.40569 5.48700 5.57907 5.65818 5.78587 5.85539 5.93285 6.07240 6.15598 6.26013 6.34383 6.47146 6.54748 6.64059 6.69079 6.75400 6.97252 7.09423 7.31007 7.49147 7.94253 8.37955 8.77642 9.12581 9.37621 10.90009 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.048626 B = 0.003285 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.688867 B = 8522.544646 C = 8796.834921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.271 3.729 3 H 0.042 0.958 4 C -0.534 4.534 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.617 5.617 13 N -0.197 5.197 14 C -0.006 4.006 15 C -0.004 4.004 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.131 4.131 19 C -0.055 4.055 20 C -0.113 4.113 21 C -0.179 4.179 22 C -0.171 4.171 23 C -0.106 4.106 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.268 0.732 28 H 0.376 0.624 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 2.760 -23.085 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.167 3.833 3 H 0.060 0.940 4 C -0.573 4.573 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.353 5.353 13 N -0.009 5.009 14 C -0.214 4.214 15 C -0.006 4.006 16 C -0.124 4.124 17 C -0.134 4.134 18 C -0.150 4.150 19 C -0.055 4.055 20 C -0.131 4.131 21 C -0.216 4.216 22 C -0.208 4.208 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.213 0.787 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.575 3.709 -22.266 22.627 hybrid contribution -0.334 -0.576 0.180 0.690 sum 1.241 3.133 -22.086 22.341 Atomic orbital electron populations 1.22594 0.99905 1.00934 0.98949 1.18874 0.89231 0.94191 0.81017 0.94027 1.21059 1.33086 1.14657 0.88484 0.90353 1.24831 0.95572 0.96803 0.95402 1.69869 1.44982 1.40083 0.98054 0.86825 0.80497 0.83418 0.77346 1.20296 1.22128 1.18834 1.48610 1.72387 1.07974 1.06362 1.73873 1.04885 1.28120 0.94040 1.23518 1.08826 0.97029 0.92023 1.18401 0.97892 0.92901 0.91439 1.21391 0.99144 0.93575 0.98293 1.21033 0.99703 0.99704 0.92994 1.20984 1.01558 0.93952 0.98487 1.18906 0.99815 0.93323 0.93480 1.21014 1.03673 1.00818 0.87618 1.23058 0.98596 0.98676 1.01250 1.23016 0.95307 1.02753 0.99755 1.20895 1.00620 0.99553 0.91588 0.93492 0.94729 0.92890 0.92232 0.78719 0.87842 0.85135 0.86202 0.86478 0.87031 0.88353 0.88615 0.88621 0.88583 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.00 37.16 0.33 -3.33 16 2 C 0.27 6.50 2.82 -69.08 -0.20 6.31 16 3 H 0.04 1.06 7.21 -51.93 -0.37 0.68 16 4 C -0.53 -14.71 9.32 -34.44 -0.32 -15.03 16 5 H 0.08 2.31 8.03 -52.49 -0.42 1.89 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 8 Si 0.89 21.48 24.37 -169.99 -4.14 17.34 16 9 H -0.28 -6.46 6.86 56.52 0.39 -6.07 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 12 N -0.62 -13.19 6.10 -5.88 -0.04 -13.23 16 13 N -0.20 -3.86 10.61 32.16 0.34 -3.52 16 14 C -0.01 -0.09 10.75 -14.66 -0.16 -0.25 16 15 C 0.00 -0.06 5.87 -105.05 -0.62 -0.68 16 16 C -0.10 -1.49 9.58 -39.16 -0.38 -1.86 16 17 C -0.12 -1.39 10.03 -39.64 -0.40 -1.79 16 18 C -0.13 -1.44 9.29 -39.49 -0.37 -1.81 16 19 C -0.06 -0.62 5.61 -104.68 -0.59 -1.21 16 20 C -0.11 -1.01 6.04 -91.77 -0.55 -1.57 16 21 C -0.18 -1.33 9.86 -26.73 -0.26 -1.59 16 22 C -0.17 -1.31 10.16 -26.74 -0.27 -1.58 16 23 C -0.11 -1.32 9.48 -39.15 -0.37 -1.69 16 24 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.38 7.56 8.58 -182.60 -1.57 5.99 16 29 H 0.10 1.52 8.02 -52.48 -0.42 1.10 16 30 H 0.13 1.98 7.56 -52.49 -0.40 1.59 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.04 6.00 -52.48 -0.32 0.73 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.70 6.17 -51.93 -0.32 0.38 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -29.75 316.89 -9.08 -38.83 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.55 Total: 5.66 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -4.24 Total: -23.99 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.08 Total: -42.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.75 -9.08 -38.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817325416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.560 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds