Wall clock time and date at job start Mon Mar 30 2020 07:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 N 1.40095 * 120.00390 * 89.99481 * 12 2 1 14 14 C 1.29747 * 120.00348 * 179.97438 * 13 12 2 15 15 C 1.47494 * 120.00357 * 180.02562 * 14 13 12 16 16 C 1.39691 * 120.15254 * 359.72378 * 15 14 13 17 17 C 1.37921 * 119.83978 * 179.74527 * 16 15 14 18 18 C 1.38385 * 120.15418 * 0.55669 * 17 16 15 19 19 C 1.38349 * 120.31750 * 359.69775 * 18 17 16 20 20 C 1.50703 * 119.92435 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49846 * 8.64337 * 20 19 18 22 22 C 1.52995 * 59.99988 * 252.50959 * 21 20 19 23 23 C 1.37956 * 120.15400 * 0.02562 * 19 18 17 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99858 * 270.00212 * 12 2 1 29 29 H 1.08009 * 119.99519 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.08346 * 0.02834 * 16 15 14 31 31 H 1.07996 * 119.92081 * 180.27908 * 17 16 15 32 32 H 1.08003 * 119.84348 * 179.71989 * 18 17 16 33 33 H 1.08999 * 115.54891 * 154.35306 * 20 19 18 34 34 H 1.09000 * 117.49342 * 0.02562 * 21 20 19 35 35 H 1.09000 * 117.49997 * 145.01667 * 21 20 19 36 36 H 1.08993 * 117.50110 * 252.50852 * 22 21 20 37 37 H 1.09001 * 117.51862 * 107.48178 * 22 21 20 38 38 H 1.08003 * 120.07951 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0183 -0.6904 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6847 -0.5813 -3.4341 15 6 2.9310 0.1774 -4.6747 16 6 2.6937 1.5534 -4.7145 17 6 2.9312 2.2575 -5.8765 18 6 3.3925 1.6019 -7.0045 19 6 3.6247 0.2384 -6.9739 20 6 4.1266 -0.4667 -8.2077 21 6 4.5515 0.4013 -9.3938 22 6 3.2525 -0.4042 -9.4618 23 6 3.3969 -0.4776 -5.8168 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8912 -0.5369 4.4374 28 1 2.1800 -1.6466 -1.1723 29 1 2.8648 -1.6459 -3.4074 30 1 2.3295 2.0656 -3.8362 31 1 2.7525 3.3221 -5.9074 32 1 3.5725 2.1574 -7.9131 33 1 4.6862 -1.3849 -8.0295 34 1 4.4684 1.4823 -9.2815 35 1 5.3910 0.0544 -9.9962 36 1 3.2374 -1.2810 -10.1090 37 1 2.3143 0.1466 -9.3945 38 1 3.5790 -1.5419 -5.7942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817325416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:52 Heat of formation + Delta-G solvation = 74.749186 kcal Electronic energy + Delta-G solvation = -17686.812393 eV Core-core repulsion = 14916.147752 eV Total energy + Delta-G solvation = -2770.664641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52026 -38.38393 -37.49207 -35.80706 -33.83050 -32.07375 -31.52945 -29.02131 -27.19073 -25.20375 -23.88494 -23.13278 -22.55930 -22.16407 -20.35645 -18.96929 -17.86575 -17.57264 -17.22062 -16.38748 -15.99246 -15.58702 -15.10098 -15.04200 -14.79435 -14.42085 -14.22060 -14.10123 -13.77241 -13.40931 -13.06199 -12.75546 -12.70301 -12.46178 -12.13601 -12.00855 -11.86429 -11.53632 -11.50773 -11.32830 -11.18535 -10.96802 -10.85245 -10.00522 -9.44596 -8.47060 -8.38561 -6.46391 0.07121 0.51066 1.29185 1.35667 1.46112 1.69810 2.08727 2.26204 2.84702 2.96736 3.26780 3.66267 3.86487 4.01642 4.08609 4.23246 4.26438 4.33799 4.41132 4.45462 4.53298 4.66715 4.72075 4.76322 4.86586 4.92824 5.00912 5.12301 5.18822 5.20442 5.28071 5.32875 5.46646 5.48559 5.66355 5.72722 5.79481 6.06153 6.12188 6.44495 6.60554 7.20254 7.65392 8.77081 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.048626 B = 0.003285 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.688867 B = 8522.544646 C = 8796.834921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.281 3.719 3 H 0.027 0.973 4 C -0.538 4.538 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.950 3.050 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.251 1.251 12 N -0.638 5.638 13 N -0.238 5.238 14 C 0.030 3.970 15 C -0.036 4.036 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.057 4.057 20 C -0.130 4.130 21 C -0.171 4.171 22 C -0.167 4.167 23 C -0.103 4.103 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.271 0.729 28 H 0.376 0.624 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 3.839 -26.409 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.175 3.825 3 H 0.044 0.956 4 C -0.577 4.577 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.776 3.224 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.176 1.176 12 N -0.375 5.375 13 N -0.048 5.048 14 C -0.180 4.180 15 C -0.038 4.038 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.057 4.057 20 C -0.148 4.148 21 C -0.207 4.207 22 C -0.204 4.204 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.213 0.787 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.298 4.789 -25.617 26.093 hybrid contribution -0.080 -0.968 0.884 1.313 sum 1.219 3.821 -24.733 25.056 Atomic orbital electron populations 1.22469 0.98294 1.01277 0.99586 1.18497 0.90357 0.92828 0.80793 0.95563 1.21307 1.32303 1.13643 0.90483 0.94012 1.25687 0.96988 0.99973 0.94923 1.70003 1.46900 1.42184 0.98753 0.85838 0.79323 0.79644 0.77574 1.18489 1.21955 1.17554 1.48222 1.74783 1.07744 1.06718 1.73925 1.08400 1.28221 0.94209 1.24090 1.04158 0.98075 0.91670 1.18470 1.00632 0.93253 0.91443 1.21414 0.99962 0.93756 0.98806 1.21283 0.99204 1.00821 0.92391 1.21352 0.99622 0.94108 0.98976 1.19228 0.98840 0.93628 0.93990 1.21063 1.05032 1.01590 0.87149 1.23170 0.98909 0.98763 0.99901 1.23085 0.95245 1.03317 0.98738 1.21115 0.99530 1.00496 0.91165 0.93758 0.92947 0.92747 0.91977 0.78715 0.86228 0.86813 0.84075 0.83861 0.86276 0.87936 0.87228 0.87302 0.88936 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.88 9.00 71.98 0.65 -6.24 16 2 C 0.28 13.70 2.82 44.24 0.12 13.82 16 3 H 0.03 1.36 7.21 -2.38 -0.02 1.34 16 4 C -0.54 -30.74 9.32 25.60 0.24 -30.50 16 5 H 0.04 2.61 8.03 -2.91 -0.02 2.59 16 6 C 0.02 1.35 5.45 84.65 0.46 1.81 16 7 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 8 Si 0.95 44.40 24.37 68.60 1.67 46.07 16 9 H -0.26 -11.36 6.86 99.48 0.68 -10.68 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 12 N -0.64 -27.96 6.10 -172.52 -1.05 -29.02 16 13 N -0.24 -9.44 10.61 -52.16 -0.55 -10.00 16 14 C 0.03 0.98 10.75 87.44 0.94 1.92 16 15 C -0.04 -1.01 5.87 -20.14 -0.12 -1.13 16 16 C -0.12 -3.32 9.58 22.55 0.22 -3.10 16 17 C -0.12 -2.60 10.03 22.23 0.22 -2.38 16 18 C -0.12 -2.30 9.29 22.33 0.21 -2.10 16 19 C -0.06 -1.12 5.61 -19.90 -0.11 -1.23 16 20 C -0.13 -1.90 6.04 -11.54 -0.07 -1.97 16 21 C -0.17 -1.88 9.86 30.59 0.30 -1.58 16 22 C -0.17 -1.98 10.16 30.59 0.31 -1.67 16 23 C -0.10 -2.33 9.48 22.55 0.21 -2.12 16 24 H 0.04 1.93 3.25 -2.38 -0.01 1.92 16 25 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.38 15.70 8.58 -213.32 -1.83 13.87 16 29 H 0.12 3.42 8.02 -2.91 -0.02 3.39 16 30 H 0.11 3.51 7.56 -2.91 -0.02 3.49 16 31 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.14 1.95 6.00 -2.91 -0.02 1.93 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.04 6.17 -2.39 -0.01 1.03 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -65.73 316.89 3.10 -62.62 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.85 Total: 24.24 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.59 Total: -36.46 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -1.31 Total: -96.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.67 Total: 46.07 kcal Total: -65.73 3.10 -62.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817325416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.374 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds