Wall clock time and date at job start Mon Mar 30 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.31713 * 119.93347 * 269.73309 * 5 4 2 7 7 C 1.32295 * 122.23102 * 179.74152 * 6 5 4 8 8 C 1.37729 * 121.50054 * 0.51321 * 7 6 5 9 9 C 1.39316 * 118.87548 * 359.75688 * 8 7 6 10 10 C 1.39299 * 119.93717 * 89.99342 * 5 4 2 11 11 C 1.46360 * 134.91281 * 359.97438 * 10 5 4 12 12 C 1.34269 * 106.94526 * 180.02562 * 11 10 5 13 13 N 1.36958 * 109.95476 * 359.97438 * 12 11 10 14 14 C 1.46493 * 125.04262 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47539 * 265.02774 * 14 13 12 16 16 H 1.07994 * 119.99322 * 0.02562 * 15 14 13 17 17 C 1.37867 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47135 * 90.00056 * 19 17 15 21 21 H 1.48504 * 109.47016 * 210.00011 * 19 17 15 22 22 H 1.48498 * 109.46745 * 329.99821 * 19 17 15 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 1.08001 * 119.24690 * 180.27151 * 7 6 5 33 33 H 1.07991 * 120.56028 * 179.78481 * 8 7 6 34 34 H 1.07999 * 126.52357 * 0.03600 * 11 10 5 35 35 H 1.08004 * 125.02461 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.47014 * 25.02988 * 14 13 12 37 37 H 1.09003 * 109.47021 * 145.02622 * 14 13 12 38 38 H 0.97010 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 2.4451 -3.0528 -0.6278 7 6 2.1386 -4.3371 -0.5457 8 6 0.9578 -4.8292 -1.0560 9 6 0.0692 -3.9469 -1.6665 10 6 0.4258 -2.5835 -1.7321 11 6 -0.6804 -1.9111 -2.4149 12 6 -1.5911 -2.8537 -2.7065 13 7 -1.1567 -4.0755 -2.2659 14 6 -1.8937 -5.3331 -2.4120 15 6 -2.6867 -5.5994 -1.1584 16 1 -2.6460 -4.9013 -0.3354 17 6 -3.4639 -6.7340 -1.0624 18 7 -3.5130 -7.5843 -2.0645 19 14 -4.4474 -7.0636 0.4913 20 1 -5.7947 -6.4523 0.3633 21 1 -4.5855 -8.5291 0.6881 22 1 -3.7438 -6.4716 1.6573 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 2.8319 -5.0158 -0.0711 33 1 0.7245 -5.8812 -0.9837 34 1 -0.7507 -0.8575 -2.6412 35 1 -2.5278 -2.6748 -3.2136 36 1 -2.5718 -5.2601 -3.2623 37 1 -1.1904 -6.1493 -2.5773 38 1 -4.0597 -8.3828 -1.9967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821281833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:51 Heat of formation + Delta-G solvation = 41.025040 kcal Electronic energy + Delta-G solvation = -18972.238773 eV Core-core repulsion = 16200.111743 eV Total energy + Delta-G solvation = -2772.127030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95356 -37.86913 -36.00275 -33.56093 -31.80213 -30.68555 -29.27137 -27.17236 -26.68936 -26.36523 -23.29408 -22.19005 -21.38980 -20.25760 -18.76463 -16.97964 -16.61180 -15.98738 -14.95324 -14.85919 -14.60832 -14.48187 -13.83095 -13.69559 -13.50176 -12.88913 -12.57754 -12.46155 -12.07392 -12.06807 -11.82116 -11.68035 -11.55703 -11.16528 -10.93050 -10.88254 -10.71342 -10.53165 -10.42523 -10.30941 -9.78792 -9.05267 -8.95273 -8.73568 -7.92168 -7.09779 -6.33859 -4.43920 1.51673 2.24766 3.14809 3.21642 3.24946 3.33787 3.75777 4.22349 4.44704 4.75452 4.98904 5.02147 5.12713 5.19308 5.36628 5.41408 5.55929 5.70707 5.73793 5.83371 5.89439 5.97202 6.01197 6.08077 6.13609 6.17084 6.18311 6.33431 6.49739 6.51066 6.57477 6.73183 6.73547 6.89619 7.23747 7.30666 7.57764 7.78710 7.93848 8.04033 8.63785 8.68354 9.24410 10.72409 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.005348 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.235819 B = 5234.466494 C = 5409.197476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.057 4.057 5 C 0.175 3.825 6 N -0.514 5.514 7 C 0.078 3.922 8 C -0.165 4.165 9 C 0.133 3.867 10 C -0.160 4.160 11 C -0.216 4.216 12 C 0.065 3.935 13 N -0.446 5.446 14 C 0.234 3.766 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.271 1.271 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 11.828 0.608 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.095 4.095 5 C 0.030 3.970 6 N -0.225 5.225 7 C -0.071 4.071 8 C -0.188 4.188 9 C 0.016 3.984 10 C -0.168 4.168 11 C -0.243 4.243 12 C -0.064 4.064 13 N -0.124 5.124 14 C 0.116 3.884 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.196 1.196 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.704 11.503 0.848 13.870 hybrid contribution -1.622 -0.872 0.432 1.892 sum 6.082 10.631 1.280 12.315 Atomic orbital electron populations 1.21960 0.94885 1.02864 1.00914 1.21019 0.96245 0.95364 0.97978 1.21834 1.00749 0.96065 1.01523 1.20468 1.01198 0.89481 0.98353 1.20496 0.88704 0.94983 0.92864 1.67356 1.33713 1.02765 1.18626 1.22040 0.94694 0.91648 0.98698 1.21052 0.94862 1.00193 1.02693 1.18302 0.87832 0.94581 0.97662 1.19867 0.97292 0.93342 1.06295 1.21381 0.94893 0.98345 1.09636 1.21922 0.99506 0.84113 1.00840 1.44757 1.14015 1.09385 1.44201 1.19743 0.91754 0.78170 0.98765 1.21338 1.27959 1.07797 1.00983 0.91755 1.24941 0.96321 0.95346 0.97072 1.69922 1.39716 1.12017 1.31124 0.86380 0.80205 0.77608 0.82700 1.20254 1.20790 1.19603 0.91581 0.93541 0.92702 0.91168 0.92901 0.92827 0.92749 0.90666 0.90701 0.83540 0.85326 0.84251 0.82023 0.93357 0.93763 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.08 37.16 0.30 -1.64 16 2 C -0.09 -1.09 2.91 -90.62 -0.26 -1.35 16 3 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.06 -0.78 4.96 -27.89 -0.14 -0.91 16 5 C 0.18 3.05 5.65 -82.25 -0.46 2.58 16 6 N -0.51 -9.37 10.26 -9.27 -0.10 -9.46 16 7 C 0.08 1.40 11.14 -17.54 -0.20 1.20 16 8 C -0.17 -3.27 10.09 -39.37 -0.40 -3.66 16 9 C 0.13 2.80 6.85 -84.05 -0.58 2.22 16 10 C -0.16 -3.01 4.84 -105.16 -0.51 -3.51 16 11 C -0.22 -3.63 9.40 -37.72 -0.35 -3.98 16 12 C 0.07 1.19 11.28 -16.66 -0.19 1.01 16 13 N -0.45 -9.60 2.75 -115.66 -0.32 -9.92 16 14 C 0.23 5.68 5.77 -5.20 -0.03 5.65 16 15 C -0.54 -14.41 9.39 -34.44 -0.32 -14.74 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H 0.07 1.06 5.83 -51.93 -0.30 0.75 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.65 7.61 -51.93 -0.40 0.25 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.14 1.91 7.53 -52.49 -0.40 1.51 16 35 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 37 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -28.54 316.47 -8.52 -37.07 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.70 Total: 2.24 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.90 Total: -16.54 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.32 Total: -43.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.54 -8.52 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.091 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds