Wall clock time and date at job start Mon Mar 30 2020 07:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.31713 * 119.93347 * 269.73309 * 5 4 2 7 7 C 1.32295 * 122.23102 * 179.74152 * 6 5 4 8 8 C 1.37729 * 121.50054 * 0.51321 * 7 6 5 9 9 C 1.39316 * 118.87548 * 359.75688 * 8 7 6 10 10 C 1.39299 * 119.93717 * 89.99342 * 5 4 2 11 11 C 1.46360 * 134.91281 * 359.97438 * 10 5 4 12 12 C 1.34269 * 106.94526 * 180.02562 * 11 10 5 13 13 N 1.36958 * 109.95476 * 359.97438 * 12 11 10 14 14 C 1.46493 * 125.04262 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47539 * 265.02774 * 14 13 12 16 16 H 1.07994 * 119.99322 * 0.02562 * 15 14 13 17 17 C 1.37867 * 120.00121 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47135 * 90.00056 * 19 17 15 21 21 H 1.48504 * 109.47016 * 210.00011 * 19 17 15 22 22 H 1.48498 * 109.46745 * 329.99821 * 19 17 15 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 1.08001 * 119.24690 * 180.27151 * 7 6 5 33 33 H 1.07991 * 120.56028 * 179.78481 * 8 7 6 34 34 H 1.07999 * 126.52357 * 0.03600 * 11 10 5 35 35 H 1.08004 * 125.02461 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.47014 * 25.02988 * 14 13 12 37 37 H 1.09003 * 109.47021 * 145.02622 * 14 13 12 38 38 H 0.97010 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 2.4451 -3.0528 -0.6278 7 6 2.1386 -4.3371 -0.5457 8 6 0.9578 -4.8292 -1.0560 9 6 0.0692 -3.9469 -1.6665 10 6 0.4258 -2.5835 -1.7321 11 6 -0.6804 -1.9111 -2.4149 12 6 -1.5911 -2.8537 -2.7065 13 7 -1.1567 -4.0755 -2.2659 14 6 -1.8937 -5.3331 -2.4120 15 6 -2.6867 -5.5994 -1.1584 16 1 -2.6460 -4.9013 -0.3354 17 6 -3.4639 -6.7340 -1.0624 18 7 -3.5130 -7.5843 -2.0645 19 14 -4.4474 -7.0636 0.4913 20 1 -5.7947 -6.4523 0.3633 21 1 -4.5855 -8.5291 0.6881 22 1 -3.7438 -6.4716 1.6573 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 2.8319 -5.0158 -0.0711 33 1 0.7245 -5.8812 -0.9837 34 1 -0.7507 -0.8575 -2.6412 35 1 -2.5278 -2.6748 -3.2136 36 1 -2.5718 -5.2601 -3.2623 37 1 -1.1904 -6.1493 -2.5773 38 1 -4.0597 -8.3828 -1.9967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821281833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:48 Heat of formation + Delta-G solvation = 27.047416 kcal Electronic energy + Delta-G solvation = -18972.844888 eV Core-core repulsion = 16200.111743 eV Total energy + Delta-G solvation = -2772.733145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42287 -39.28483 -37.10243 -35.50862 -33.34636 -32.24891 -30.65854 -28.77863 -27.84847 -27.57424 -25.14130 -23.59722 -22.87710 -21.39967 -20.10765 -18.88716 -18.28422 -17.42618 -16.63488 -16.23181 -16.02172 -15.83045 -15.23851 -15.01478 -14.86201 -14.40126 -14.10208 -13.72712 -13.59923 -13.40134 -13.20549 -12.93511 -12.83947 -12.71542 -12.63688 -12.34580 -12.22593 -11.74719 -11.72408 -11.59631 -11.43184 -10.79284 -10.50803 -10.39507 -9.45446 -8.63348 -8.32254 -6.56351 0.08634 0.74807 1.33127 1.34446 1.45338 1.88619 2.16174 2.32888 2.91983 3.03096 3.49900 3.76980 3.96107 4.03649 4.16926 4.22391 4.27913 4.39969 4.56639 4.64660 4.72164 4.82421 4.85655 4.88700 4.94634 4.98028 5.04472 5.10306 5.15458 5.22031 5.33198 5.37611 5.48753 5.56666 5.58174 5.77081 5.83153 5.90866 6.32290 6.41828 6.63209 7.16468 7.25165 8.67752 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.005348 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.235819 B = 5234.466494 C = 5409.197476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.055 4.055 5 C 0.180 3.820 6 N -0.525 5.525 7 C 0.087 3.913 8 C -0.195 4.195 9 C 0.100 3.900 10 C -0.171 4.171 11 C -0.190 4.190 12 C 0.040 3.960 13 N -0.464 5.464 14 C 0.250 3.750 15 C -0.555 4.555 16 H 0.050 0.950 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.275 1.275 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.117 0.883 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.039 0.961 37 H 0.020 0.980 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 14.176 1.112 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.093 4.093 5 C 0.034 3.966 6 N -0.237 5.237 7 C -0.062 4.062 8 C -0.218 4.218 9 C -0.016 4.016 10 C -0.179 4.179 11 C -0.215 4.215 12 C -0.086 4.086 13 N -0.143 5.143 14 C 0.131 3.869 15 C -0.593 4.593 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.557 5.557 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.193 0.807 33 H 0.135 0.865 34 H 0.195 0.805 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.031 13.881 1.341 16.093 hybrid contribution -1.633 -1.547 0.282 2.267 sum 6.397 12.335 1.623 13.990 Atomic orbital electron populations 1.21929 0.95288 1.00928 1.02226 1.20974 0.95805 0.96904 0.96485 1.21779 1.01244 0.93927 1.02593 1.20612 1.02031 0.86909 0.99732 1.21162 0.87827 0.96724 0.90876 1.67503 1.34033 1.02896 1.19221 1.22478 0.94185 0.92167 0.97343 1.21156 0.96147 0.99818 1.04683 1.18774 0.88049 0.96299 0.98517 1.20181 0.98359 0.92485 1.06838 1.21765 0.93038 0.99561 1.07143 1.22449 1.01075 0.83279 1.01840 1.44622 1.14488 1.09353 1.45836 1.19260 0.90869 0.79232 0.97561 1.21479 1.28613 1.07886 1.01363 0.93210 1.25725 0.97123 0.94969 0.99968 1.70007 1.40395 1.12456 1.32803 0.85411 0.78940 0.77763 0.78756 1.19143 1.19905 1.19946 0.94979 0.92694 0.91016 0.93010 0.92165 0.92062 0.91380 0.88804 0.89711 0.80681 0.86520 0.80473 0.79902 0.94252 0.96241 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.08 71.98 0.58 -2.88 16 2 C -0.08 -1.84 2.91 -10.79 -0.03 -1.87 16 3 C -0.14 -2.21 9.19 71.98 0.66 -1.55 16 4 C -0.05 -1.34 4.96 29.85 0.15 -1.19 16 5 C 0.18 6.01 5.65 42.83 0.24 6.25 16 6 N -0.53 -18.69 10.26 -183.24 -1.88 -20.57 16 7 C 0.09 3.10 11.14 84.50 0.94 4.05 16 8 C -0.20 -8.02 10.09 22.41 0.23 -7.80 16 9 C 0.10 4.31 6.85 39.28 0.27 4.57 16 10 C -0.17 -6.29 4.84 -20.21 -0.10 -6.39 16 11 C -0.19 -6.02 9.40 23.48 0.22 -5.80 16 12 C 0.04 1.45 11.28 82.99 0.94 2.39 16 13 N -0.46 -20.60 2.75 -519.83 -1.43 -22.03 16 14 C 0.25 12.75 5.77 85.64 0.49 13.25 16 15 C -0.56 -30.45 9.39 25.60 0.24 -30.21 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 17 C 0.02 1.26 5.46 84.65 0.46 1.72 16 18 N -0.92 -51.60 13.29 21.44 0.28 -51.31 16 19 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.03 0.97 5.83 -2.39 -0.01 0.96 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.43 7.61 -2.39 -0.02 1.41 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.96 7.93 -2.39 -0.02 1.94 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.12 4.91 8.06 -2.92 -0.02 4.89 16 34 H 0.18 4.16 7.53 -2.91 -0.02 4.13 16 35 H 0.18 5.58 8.06 -2.91 -0.02 5.55 16 36 H 0.04 2.03 8.12 -2.38 -0.02 2.01 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -62.59 316.47 5.33 -57.26 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.03 Total: 17.38 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 5.29 Total: -25.47 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.02 Total: -93.91 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.59 5.33 -57.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.309 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds