Wall clock time and date at job start Mon Mar 30 2020 07:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.31711 * 119.93130 * 269.72482 * 4 3 2 6 6 C 1.32298 * 122.23433 * 179.74751 * 5 4 3 7 7 C 1.37731 * 121.49477 * 0.51054 * 6 5 4 8 8 C 1.39303 * 118.87856 * 359.76538 * 7 6 5 9 9 C 1.39289 * 119.93893 * 89.99405 * 4 3 2 10 10 C 1.46351 * 134.91673 * 359.97438 * 9 4 3 11 11 C 1.34274 * 106.95226 * 180.02562 * 10 9 4 12 12 N 1.36960 * 109.95144 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.04214 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47184 * 264.97748 * 13 12 11 15 15 C 1.50705 * 109.47321 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99568 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99908 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00415 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99637 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47214 * 60.00100 * 19 17 15 21 21 H 1.48498 * 109.46924 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47312 * 299.99811 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 27 27 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.07993 * 119.25183 * 180.27272 * 6 5 4 31 31 H 1.07999 * 120.55568 * 179.78116 * 7 6 5 32 32 H 1.08004 * 126.52745 * 0.04551 * 10 9 4 33 33 H 1.08002 * 125.02765 * 179.97438 * 11 10 9 34 34 H 1.09007 * 109.47549 * 24.97607 * 13 12 11 35 35 H 1.08999 * 109.47470 * 144.97494 * 13 12 11 36 36 H 1.09003 * 109.47147 * 300.00030 * 14 13 12 37 37 H 1.08999 * 109.47432 * 59.99986 * 14 13 12 38 38 H 0.97000 * 119.99821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2046 1.4479 1.1405 6 6 5.5266 1.4432 1.1931 7 6 6.2923 1.4429 0.0483 8 6 5.6523 1.4427 -1.1891 9 6 4.2416 1.4426 -1.2080 10 6 3.8587 1.4422 -2.6205 11 6 4.9959 1.4420 -3.3344 12 7 6.0762 1.4428 -2.4926 13 6 7.4769 1.4433 -2.9216 14 6 8.0022 0.0066 -2.9498 15 6 9.4434 0.0072 -3.3905 16 1 9.9352 0.9391 -3.6273 17 6 10.1338 -1.1819 -3.4915 18 7 9.5351 -2.3167 -3.2026 19 14 11.9200 -1.1812 -4.0385 20 1 12.7285 -0.3765 -3.0878 21 1 12.4299 -2.5757 -4.0657 22 1 12.0213 -0.5911 -5.3974 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 6.0164 1.4435 2.1556 31 1 7.3706 1.4426 0.1089 32 1 2.8528 1.4425 -3.0138 33 1 5.0507 1.4413 -4.4130 34 1 7.5513 1.8770 -3.9189 35 1 8.0705 2.0336 -2.2236 36 1 7.9278 -0.4271 -1.9525 37 1 7.4087 -0.5837 -3.6478 38 1 10.0208 -3.1532 -3.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821289418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:12 Heat of formation + Delta-G solvation = 40.408112 kcal Electronic energy + Delta-G solvation = -18468.184384 eV Core-core repulsion = 15696.030602 eV Total energy + Delta-G solvation = -2772.153782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22310 -38.05751 -35.02207 -34.06977 -32.25613 -31.12379 -29.60113 -28.57204 -26.56924 -24.90149 -22.67725 -22.18468 -21.32706 -21.21175 -19.17616 -17.22779 -16.44107 -16.15234 -15.15977 -14.84939 -14.78186 -14.40268 -14.19785 -13.95239 -13.48270 -13.23998 -12.76342 -12.58436 -12.39896 -12.18334 -11.96249 -11.73948 -11.39320 -11.13343 -11.06670 -10.81963 -10.76560 -10.60883 -10.25505 -9.94993 -9.46010 -9.30006 -9.15235 -8.54413 -8.20599 -7.35431 -6.18139 -4.24688 1.27847 1.98502 3.01824 3.22358 3.25357 3.28300 3.32789 4.23033 4.31315 4.58768 4.90271 5.04347 5.11670 5.15559 5.17733 5.28079 5.32967 5.52004 5.57621 5.73567 5.80331 5.86292 5.87906 5.89692 6.02077 6.04729 6.07384 6.18278 6.31532 6.36631 6.41497 6.49609 6.96043 7.01050 7.35111 7.36831 7.59058 7.62273 7.81395 8.12715 8.47458 8.80940 9.41134 10.92681 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.004276 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.155422 B = 6546.399240 C = 6673.353244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.062 4.062 4 C 0.178 3.822 5 N -0.510 5.510 6 C 0.089 3.911 7 C -0.172 4.172 8 C 0.132 3.868 9 C -0.161 4.161 10 C -0.206 4.206 11 C 0.060 3.940 12 N -0.462 5.462 13 C 0.105 3.895 14 C 0.013 3.987 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 7.356 3.492 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.100 4.100 4 C 0.032 3.968 5 N -0.221 5.221 6 C -0.061 4.061 7 C -0.195 4.195 8 C 0.017 3.983 9 C -0.168 4.168 10 C -0.232 4.232 11 C -0.067 4.067 12 N -0.142 5.142 13 C -0.014 4.014 14 C -0.025 4.025 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.725 3.275 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.028 7.173 4.179 15.448 hybrid contribution 1.786 -0.232 -1.206 2.167 sum -11.242 6.941 2.973 13.543 Atomic orbital electron populations 1.21764 0.95746 1.01517 1.01649 1.21446 0.95388 0.95964 1.02680 1.20443 0.88981 0.97743 1.02844 1.20618 0.95680 0.93964 0.86495 1.67406 1.09720 1.16429 1.28500 1.22129 0.88959 0.97791 0.97197 1.21060 1.01124 1.07137 0.90184 1.18310 0.93247 1.00711 0.86046 1.19914 0.92683 1.09582 0.94659 1.21451 0.97693 1.13726 0.90311 1.21953 0.85627 1.02652 0.96422 1.44504 1.07710 1.58674 1.03312 1.22348 0.76108 1.02868 1.00105 1.19437 0.96199 0.88488 0.98361 1.20963 0.95883 0.93179 1.47034 0.92345 1.25003 0.98584 0.95450 0.94998 1.69959 1.37078 0.97862 1.47716 0.86568 0.84449 0.77213 0.79285 1.20048 1.21092 1.20073 0.92814 0.92789 0.92756 0.91705 0.91722 0.90571 0.90487 0.83119 0.85192 0.83775 0.81539 0.90074 0.90620 0.95894 0.95914 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 3 C -0.06 -0.77 5.47 -27.88 -0.15 -0.92 16 4 C 0.18 2.87 6.08 -82.25 -0.50 2.37 16 5 N -0.51 -8.63 10.26 -9.27 -0.10 -8.73 16 6 C 0.09 1.44 11.14 -17.54 -0.20 1.25 16 7 C -0.17 -3.04 10.09 -39.37 -0.40 -3.44 16 8 C 0.13 2.49 6.85 -84.05 -0.58 1.91 16 9 C -0.16 -2.78 6.15 -105.16 -0.65 -3.42 16 10 C -0.21 -3.11 10.83 -37.72 -0.41 -3.52 16 11 C 0.06 0.96 11.28 -16.66 -0.19 0.77 16 12 N -0.46 -8.53 2.76 -114.38 -0.32 -8.85 16 13 C 0.11 2.06 5.96 -4.05 -0.02 2.03 16 14 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 15 C -0.53 -14.24 9.11 -34.44 -0.31 -14.56 16 16 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -30.60 324.31 -9.12 -39.71 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.87 Total: 0.70 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.44 Total: -18.22 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.33 Total: -42.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.60 -9.12 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.121 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds