Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.31711 * 119.93130 * 269.72482 * 4 3 2 6 6 C 1.32298 * 122.23433 * 179.74751 * 5 4 3 7 7 C 1.37731 * 121.49477 * 0.51054 * 6 5 4 8 8 C 1.39303 * 118.87856 * 359.76538 * 7 6 5 9 9 C 1.39289 * 119.93893 * 89.99405 * 4 3 2 10 10 C 1.46351 * 134.91673 * 359.97438 * 9 4 3 11 11 C 1.34274 * 106.95226 * 180.02562 * 10 9 4 12 12 N 1.36960 * 109.95144 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.04214 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47184 * 264.97748 * 13 12 11 15 15 C 1.50705 * 109.47321 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99568 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99908 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00415 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99637 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47214 * 60.00100 * 19 17 15 21 21 H 1.48498 * 109.46924 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47312 * 299.99811 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 27 27 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.07993 * 119.25183 * 180.27272 * 6 5 4 31 31 H 1.07999 * 120.55568 * 179.78116 * 7 6 5 32 32 H 1.08004 * 126.52745 * 0.04551 * 10 9 4 33 33 H 1.08002 * 125.02765 * 179.97438 * 11 10 9 34 34 H 1.09007 * 109.47549 * 24.97607 * 13 12 11 35 35 H 1.08999 * 109.47470 * 144.97494 * 13 12 11 36 36 H 1.09003 * 109.47147 * 300.00030 * 14 13 12 37 37 H 1.08999 * 109.47432 * 59.99986 * 14 13 12 38 38 H 0.97000 * 119.99821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2046 1.4479 1.1405 6 6 5.5266 1.4432 1.1931 7 6 6.2923 1.4429 0.0483 8 6 5.6523 1.4427 -1.1891 9 6 4.2416 1.4426 -1.2080 10 6 3.8587 1.4422 -2.6205 11 6 4.9959 1.4420 -3.3344 12 7 6.0762 1.4428 -2.4926 13 6 7.4769 1.4433 -2.9216 14 6 8.0022 0.0066 -2.9498 15 6 9.4434 0.0072 -3.3905 16 1 9.9352 0.9391 -3.6273 17 6 10.1338 -1.1819 -3.4915 18 7 9.5351 -2.3167 -3.2026 19 14 11.9200 -1.1812 -4.0385 20 1 12.7285 -0.3765 -3.0878 21 1 12.4299 -2.5757 -4.0657 22 1 12.0213 -0.5911 -5.3974 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 6.0164 1.4435 2.1556 31 1 7.3706 1.4426 0.1089 32 1 2.8528 1.4425 -3.0138 33 1 5.0507 1.4413 -4.4130 34 1 7.5513 1.8770 -3.9189 35 1 8.0705 2.0336 -2.2236 36 1 7.9278 -0.4271 -1.9525 37 1 7.4087 -0.5837 -3.6478 38 1 10.0208 -3.1532 -3.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821289418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = 24.817703 kcal Electronic energy + Delta-G solvation = -18468.860435 eV Core-core repulsion = 15696.030602 eV Total energy + Delta-G solvation = -2772.829833 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52131 -39.34669 -36.07916 -35.87045 -33.95313 -32.41354 -30.97316 -30.09101 -27.64591 -26.68451 -23.92502 -23.70271 -22.77315 -22.30290 -20.48139 -18.86937 -18.10796 -17.50346 -16.69039 -16.42683 -15.91823 -15.79859 -15.47972 -15.18870 -14.76503 -14.63421 -14.25646 -14.00775 -13.74941 -13.57416 -13.15066 -12.87551 -12.81550 -12.78543 -12.54827 -12.10542 -12.02148 -11.93494 -11.79711 -11.51004 -11.48357 -10.67551 -10.60375 -10.45772 -9.56723 -8.65511 -8.28560 -6.43416 0.00404 0.63714 1.38736 1.41431 1.49534 1.76545 1.94381 2.37009 2.94974 3.05472 3.44353 3.66491 3.83166 3.94363 4.12624 4.17143 4.28371 4.32289 4.39927 4.48729 4.58609 4.65233 4.66127 4.82392 4.85684 4.91276 5.04315 5.06655 5.16686 5.27670 5.30727 5.35064 5.41361 5.51257 5.64630 5.73464 5.79018 6.00359 6.19326 6.37126 6.72864 7.18684 7.27970 8.82776 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.004276 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.155422 B = 6546.399240 C = 6673.353244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.058 4.058 4 C 0.175 3.825 5 N -0.525 5.525 6 C 0.090 3.910 7 C -0.196 4.196 8 C 0.101 3.899 9 C -0.179 4.179 10 C -0.193 4.193 11 C 0.044 3.956 12 N -0.475 5.475 13 C 0.122 3.878 14 C 0.024 3.976 15 C -0.546 4.546 16 H 0.073 0.927 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.262 1.262 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.178 0.822 31 H 0.126 0.874 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.103 0.897 35 H 0.079 0.921 36 H -0.016 1.016 37 H -0.006 1.006 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 8.529 2.772 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.096 4.096 4 C 0.030 3.970 5 N -0.236 5.236 6 C -0.059 4.059 7 C -0.219 4.219 8 C -0.014 4.014 9 C -0.186 4.186 10 C -0.218 4.218 11 C -0.081 4.081 12 N -0.156 5.156 13 C 0.002 3.998 14 C -0.014 4.014 15 C -0.585 4.585 16 H 0.091 0.909 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.186 1.186 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.195 0.805 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.213 0.787 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.002 0.998 37 H 0.013 0.987 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.875 8.369 3.455 16.568 hybrid contribution 1.960 -0.612 -0.923 2.251 sum -11.915 7.756 2.532 14.441 Atomic orbital electron populations 1.21723 0.93435 1.02239 1.02706 1.21400 0.97321 0.95040 1.01351 1.20555 0.86344 0.98512 1.04218 1.21254 0.97520 0.92274 0.85953 1.67521 1.09890 1.17143 1.29004 1.22566 0.89019 0.96438 0.97908 1.21207 1.01224 1.08754 0.90751 1.18742 0.94560 1.01629 0.86462 1.20295 0.92177 1.09965 0.96155 1.21877 0.99068 1.11859 0.89034 1.22562 0.85078 1.02736 0.97726 1.44480 1.07603 1.59809 1.03732 1.21972 0.77196 0.99146 1.01495 1.19219 0.95682 0.91404 0.95091 1.21453 0.96876 0.93795 1.46337 0.90912 1.26004 1.03496 0.95021 0.94984 1.70114 1.39124 0.98620 1.49277 0.85421 0.78522 0.77232 0.79423 1.19018 1.21150 1.18649 0.92318 0.91975 0.91451 0.92808 0.93351 0.88594 0.89657 0.80521 0.85579 0.80298 0.78732 0.87869 0.90274 0.99750 0.98745 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 3 C -0.06 -1.33 5.47 29.85 0.16 -1.17 16 4 C 0.18 5.51 6.08 42.83 0.26 5.77 16 5 N -0.52 -17.57 10.26 -183.25 -1.88 -19.45 16 6 C 0.09 2.94 11.14 84.50 0.94 3.89 16 7 C -0.20 -7.17 10.09 22.41 0.23 -6.94 16 8 C 0.10 3.86 6.85 39.28 0.27 4.12 16 9 C -0.18 -6.05 6.15 -20.22 -0.12 -6.17 16 10 C -0.19 -5.47 10.83 23.48 0.25 -5.21 16 11 C 0.04 1.34 11.28 82.99 0.94 2.27 16 12 N -0.48 -17.58 2.76 -515.78 -1.43 -19.01 16 13 C 0.12 4.80 5.96 86.38 0.51 5.32 16 14 C 0.02 1.22 5.30 29.85 0.16 1.38 16 15 C -0.55 -29.50 9.11 25.60 0.23 -29.27 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 19 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.82 7.92 -2.39 -0.02 1.80 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.18 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.20 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.10 3.56 8.12 -2.38 -0.02 3.54 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.40 324.31 5.21 -62.19 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.02 Total: 16.55 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 5.19 Total: -29.13 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -3.02 Total: -94.24 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.40 5.21 -62.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.007 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds