Wall clock time and date at job start Mon Mar 30 2020 07:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29746 * 120.00041 * 180.02562 * 13 12 2 15 15 C 1.47493 * 119.99738 * 179.97438 * 14 13 12 16 16 C 1.39677 * 120.15741 * 359.71992 * 15 14 13 17 17 C 1.37938 * 119.84165 * 179.72424 * 16 15 14 18 18 C 1.38372 * 120.15335 * 0.57832 * 17 16 15 19 19 C 1.50703 * 119.84119 * 179.72037 * 18 17 16 20 20 C 1.52999 * 117.49966 * 8.72312 * 19 18 17 21 21 C 1.52991 * 117.49675 * 300.06071 * 19 18 17 22 22 C 1.38367 * 120.31430 * 359.69130 * 18 17 16 23 23 C 1.37937 * 120.16123 * 0.02562 * 22 18 17 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 29 29 H 1.08002 * 119.99807 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.07903 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.92392 * 180.26874 * 17 16 15 32 32 H 1.09004 * 115.54858 * 154.39172 * 19 18 17 33 33 H 1.08999 * 117.49728 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.49892 * 145.02257 * 20 19 18 35 35 H 1.09000 * 117.50047 * 214.98053 * 21 19 18 36 36 H 1.08998 * 117.50355 * 359.97438 * 21 19 18 37 37 H 1.08005 * 119.91989 * 180.02562 * 22 18 17 38 38 H 1.07994 * 120.08079 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5814 3.4341 15 6 2.9310 0.1773 4.6747 16 6 2.7048 1.5552 4.7111 17 6 2.9318 2.2574 5.8765 18 6 3.3940 1.6020 7.0041 19 6 3.6456 2.3773 8.2717 20 6 3.1816 3.8346 8.3125 21 6 4.6741 3.5085 8.2155 22 6 3.6255 0.2382 6.9736 23 6 3.3973 -0.4777 5.8169 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.1801 -1.6466 1.1723 29 1 2.8647 -1.6460 3.4074 30 1 2.3491 2.0688 3.8302 31 1 2.7532 3.3221 5.9074 32 1 3.5800 1.8022 9.1954 33 1 2.6947 4.2328 7.4223 34 1 2.8111 4.2185 9.2630 35 1 5.2848 3.6781 9.1022 36 1 5.1690 3.6919 7.2618 37 1 3.9859 -0.2669 7.8576 38 1 3.5781 -1.5422 5.7946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841631343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:55 Heat of formation + Delta-G solvation = 82.753972 kcal Electronic energy + Delta-G solvation = -17616.147906 eV Core-core repulsion = 14845.830378 eV Total energy + Delta-G solvation = -2770.317527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.52700 -37.12362 -36.11666 -34.00934 -31.77517 -30.75757 -30.05343 -27.15105 -25.26563 -24.00761 -22.96753 -22.24538 -21.03662 -20.21647 -19.73973 -17.10898 -16.75345 -15.86608 -15.40057 -14.98933 -14.80827 -14.29271 -13.87821 -13.48170 -13.18703 -13.07303 -12.52845 -12.44970 -12.18581 -11.72652 -11.53657 -11.21428 -11.05580 -11.03362 -10.89944 -10.69436 -10.51456 -10.40443 -10.25198 -10.20543 -9.54094 -9.06653 -8.76477 -8.61119 -8.42565 -6.78588 -6.15823 -4.24441 1.19261 1.61313 2.97443 3.24286 3.29001 3.30525 3.72151 3.77784 4.21922 4.34794 4.47429 4.72920 4.85491 4.97584 5.12370 5.16287 5.16575 5.31008 5.43727 5.57859 5.63958 5.73222 5.91643 5.95959 6.00312 6.18242 6.24107 6.48383 6.70735 6.76672 6.78187 6.97648 7.02370 7.12960 7.17214 7.55186 7.75088 7.83447 8.12180 8.27430 8.82666 9.29433 9.42423 10.90036 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.003153 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.330482 B = 8879.261332 C = 9117.474119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.297 3.703 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.622 5.622 13 N -0.192 5.192 14 C -0.017 4.017 15 C -0.008 4.008 16 C -0.097 4.097 17 C -0.120 4.120 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.180 4.180 21 C -0.172 4.172 22 C -0.113 4.113 23 C -0.112 4.112 24 H 0.012 0.988 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.369 0.631 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 1.741 19.197 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.195 3.805 3 H 0.060 0.940 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.358 5.358 13 N -0.005 5.005 14 C -0.225 4.225 15 C -0.010 4.010 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.069 4.069 19 C -0.131 4.131 20 C -0.217 4.217 21 C -0.209 4.209 22 C -0.131 4.131 23 C -0.133 4.133 24 H 0.032 0.968 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.205 0.795 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.109 2.834 18.430 19.094 hybrid contribution 0.532 -1.758 -0.705 1.968 sum 4.641 1.076 17.724 18.353 Atomic orbital electron populations 1.22210 0.98961 0.99235 1.00585 1.18546 0.90176 0.93559 0.78250 0.94022 1.21197 1.32382 1.13351 0.90226 0.92243 1.24862 0.94788 0.94995 0.98961 1.69880 1.35905 1.22499 1.24070 0.86473 0.79196 0.79594 0.81647 1.21037 1.20152 1.20157 1.49104 1.72038 1.07828 1.06828 1.73908 1.04186 1.28248 0.94115 1.23485 1.09919 0.96847 0.92270 1.18465 0.98001 0.92881 0.91653 1.21367 0.98758 0.93578 0.98021 1.20943 1.00433 0.99778 0.92600 1.19092 1.00626 0.93552 0.93598 1.21006 1.04889 0.90177 0.96998 1.23081 0.97417 0.97698 1.03456 1.23034 0.92140 1.02363 1.03401 1.20710 1.01226 0.93316 0.97889 1.21092 1.00346 0.99645 0.92215 0.96841 0.89103 0.95507 0.92462 0.79513 0.88174 0.85027 0.86250 0.87273 0.88220 0.88669 0.88724 0.88517 0.86354 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.29 37.16 0.35 -3.39 16 2 C 0.30 7.62 3.23 -69.09 -0.22 7.39 16 3 H 0.04 1.19 8.14 -51.92 -0.42 0.76 16 4 C -0.53 -14.36 8.74 -34.44 -0.30 -14.66 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.62 -13.94 6.10 -5.88 -0.04 -13.98 16 13 N -0.19 -3.98 10.61 32.16 0.34 -3.64 16 14 C -0.02 -0.30 10.75 -14.66 -0.16 -0.46 16 15 C -0.01 -0.12 5.87 -105.05 -0.62 -0.74 16 16 C -0.10 -1.48 9.58 -39.15 -0.38 -1.86 16 17 C -0.12 -1.55 9.28 -39.64 -0.37 -1.92 16 18 C -0.07 -0.80 5.62 -104.52 -0.59 -1.39 16 19 C -0.11 -1.06 6.03 -91.78 -0.55 -1.62 16 20 C -0.18 -1.51 9.86 -26.69 -0.26 -1.77 16 21 C -0.17 -1.46 10.16 -26.70 -0.27 -1.73 16 22 C -0.11 -1.31 9.72 -39.64 -0.39 -1.70 16 23 C -0.11 -1.44 9.79 -39.15 -0.38 -1.82 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.37 7.65 8.58 -182.60 -1.57 6.08 16 29 H 0.10 1.55 8.02 -52.49 -0.42 1.13 16 30 H 0.13 2.16 7.55 -52.49 -0.40 1.76 16 31 H 0.12 1.34 6.00 -52.49 -0.32 1.03 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.86 6.16 -51.93 -0.32 0.54 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -28.46 323.71 -10.13 -38.58 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.68 Total: 6.42 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -4.23 Total: -23.93 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.93 Total: -41.71 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.46 -10.13 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.339 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds