Wall clock time and date at job start Mon Mar 30 2020 07:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29746 * 120.00041 * 180.02562 * 13 12 2 15 15 C 1.47493 * 119.99738 * 179.97438 * 14 13 12 16 16 C 1.39677 * 120.15741 * 359.71992 * 15 14 13 17 17 C 1.37938 * 119.84165 * 179.72424 * 16 15 14 18 18 C 1.38372 * 120.15335 * 0.57832 * 17 16 15 19 19 C 1.50703 * 119.84119 * 179.72037 * 18 17 16 20 20 C 1.52999 * 117.49966 * 8.72312 * 19 18 17 21 21 C 1.52991 * 117.49675 * 300.06071 * 19 18 17 22 22 C 1.38367 * 120.31430 * 359.69130 * 18 17 16 23 23 C 1.37937 * 120.16123 * 0.02562 * 22 18 17 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 29 29 H 1.08002 * 119.99807 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.07903 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.92392 * 180.26874 * 17 16 15 32 32 H 1.09004 * 115.54858 * 154.39172 * 19 18 17 33 33 H 1.08999 * 117.49728 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.49892 * 145.02257 * 20 19 18 35 35 H 1.09000 * 117.50047 * 214.98053 * 21 19 18 36 36 H 1.08998 * 117.50355 * 359.97438 * 21 19 18 37 37 H 1.08005 * 119.91989 * 180.02562 * 22 18 17 38 38 H 1.07994 * 120.08079 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5814 3.4341 15 6 2.9310 0.1773 4.6747 16 6 2.7048 1.5552 4.7111 17 6 2.9318 2.2574 5.8765 18 6 3.3940 1.6020 7.0041 19 6 3.6456 2.3773 8.2717 20 6 3.1816 3.8346 8.3125 21 6 4.6741 3.5085 8.2155 22 6 3.6255 0.2382 6.9736 23 6 3.3973 -0.4777 5.8169 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.1801 -1.6466 1.1723 29 1 2.8647 -1.6460 3.4074 30 1 2.3491 2.0688 3.8302 31 1 2.7532 3.3221 5.9074 32 1 3.5800 1.8022 9.1954 33 1 2.6947 4.2328 7.4223 34 1 2.8111 4.2185 9.2630 35 1 5.2848 3.6781 9.1022 36 1 5.1690 3.6919 7.2618 37 1 3.9859 -0.2669 7.8576 38 1 3.5781 -1.5422 5.7946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841631343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:55 Heat of formation + Delta-G solvation = 68.379086 kcal Electronic energy + Delta-G solvation = -17616.771248 eV Core-core repulsion = 14845.830378 eV Total energy + Delta-G solvation = -2770.940869 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50529 -38.31650 -37.43774 -35.76871 -33.46517 -31.80341 -31.47403 -28.75175 -27.32063 -25.17793 -23.90419 -23.01035 -22.53251 -21.74253 -20.84177 -18.84622 -17.80067 -17.45704 -16.97888 -16.24437 -15.89530 -15.48229 -15.18220 -14.74473 -14.53714 -14.36819 -14.20143 -13.87010 -13.35831 -13.26371 -12.87853 -12.75410 -12.55445 -12.40675 -12.26299 -12.14436 -12.02323 -11.84311 -11.47700 -11.20453 -11.14101 -10.89450 -10.59942 -9.79981 -9.68000 -8.36641 -8.18303 -6.37245 0.05970 0.57626 1.41743 1.43888 1.51827 1.71455 2.16124 2.45981 2.85697 3.09108 3.26397 3.69060 3.93394 3.96582 4.08625 4.17268 4.22061 4.36076 4.54138 4.57356 4.72204 4.78637 4.86451 4.95185 5.00104 5.06835 5.11426 5.16185 5.22138 5.29601 5.31572 5.48028 5.61667 5.65143 5.75115 5.79809 5.89406 6.12951 6.16497 6.38940 6.81842 7.34358 7.75807 8.85399 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.003153 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.330482 B = 8879.261332 C = 9117.474119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.308 3.692 3 H -0.001 1.001 4 C -0.550 4.550 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.267 1.267 12 N -0.641 5.641 13 N -0.245 5.245 14 C 0.024 3.976 15 C -0.046 4.046 16 C -0.111 4.111 17 C -0.130 4.130 18 C -0.058 4.058 19 C -0.124 4.124 20 C -0.180 4.180 21 C -0.167 4.167 22 C -0.114 4.114 23 C -0.099 4.099 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.268 0.732 28 H 0.374 0.626 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.790 0.686 21.771 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.204 3.796 3 H 0.017 0.983 4 C -0.589 4.589 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.192 1.192 12 N -0.378 5.378 13 N -0.055 5.055 14 C -0.186 4.186 15 C -0.048 4.048 16 C -0.132 4.132 17 C -0.147 4.147 18 C -0.059 4.059 19 C -0.141 4.141 20 C -0.216 4.216 21 C -0.204 4.204 22 C -0.132 4.132 23 C -0.120 4.120 24 H 0.035 0.965 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.211 0.789 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.344 1.780 21.022 21.763 hybrid contribution 0.243 -1.353 -1.151 1.793 sum 5.586 0.427 19.870 20.645 Atomic orbital electron populations 1.22026 0.98800 0.99109 0.99633 1.18107 0.90263 0.91534 0.79702 0.98282 1.21501 1.32675 1.13604 0.91169 0.92030 1.25737 0.94825 0.95641 1.01982 1.70013 1.36755 1.23722 1.24810 0.85406 0.78574 0.78681 0.77724 1.20539 1.19790 1.19179 1.48553 1.74657 1.07690 1.06916 1.73970 1.08091 1.28834 0.94565 1.24109 1.04725 0.98061 0.91725 1.18572 1.01224 0.93008 0.91996 1.21327 0.99582 0.94063 0.98206 1.21093 1.00775 1.00470 0.92390 1.19484 0.98223 0.94174 0.93994 1.21125 1.06003 0.90626 0.96382 1.23172 0.97498 0.96845 1.04103 1.23089 0.92299 1.01255 1.03791 1.21126 1.00248 0.93219 0.98565 1.21400 0.98286 1.00959 0.91313 0.96493 0.91161 0.95020 0.92327 0.78928 0.86021 0.87495 0.85170 0.85231 0.88973 0.86899 0.86754 0.89595 0.82945 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.05 9.29 71.98 0.67 -6.38 16 2 C 0.31 16.58 3.23 44.24 0.14 16.72 16 3 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 4 C -0.55 -30.54 8.74 25.60 0.22 -30.31 16 5 H 0.06 3.30 7.79 -2.91 -0.02 3.27 16 6 C 0.02 1.02 5.30 84.66 0.45 1.46 16 7 N -0.91 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 N -0.64 -29.88 6.10 -172.53 -1.05 -30.94 16 13 N -0.25 -10.57 10.61 -52.16 -0.55 -11.13 16 14 C 0.02 0.81 10.75 87.44 0.94 1.75 16 15 C -0.05 -1.38 5.87 -20.14 -0.12 -1.49 16 16 C -0.11 -3.47 9.58 22.55 0.22 -3.25 16 17 C -0.13 -3.27 9.28 22.23 0.21 -3.06 16 18 C -0.06 -1.21 5.62 -19.80 -0.11 -1.32 16 19 C -0.12 -1.91 6.03 -11.54 -0.07 -1.98 16 20 C -0.18 -2.53 9.86 30.62 0.30 -2.23 16 21 C -0.17 -2.33 10.16 30.62 0.31 -2.02 16 22 C -0.11 -2.22 9.72 22.23 0.22 -2.00 16 23 C -0.10 -2.25 9.79 22.55 0.22 -2.03 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.37 15.92 8.58 -213.32 -1.83 14.09 16 29 H 0.12 3.59 8.02 -2.91 -0.02 3.56 16 30 H 0.11 3.79 7.55 -2.91 -0.02 3.77 16 31 H 0.13 2.89 6.00 -2.91 -0.02 2.87 16 32 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.44 6.16 -2.39 -0.01 1.42 16 34 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -63.59 323.71 3.48 -60.11 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.78 Total: 25.42 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.60 Total: -36.13 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -1.36 Total: -94.37 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.59 3.48 -60.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.487 kcal (2) G-P(sol) polarization free energy of solvation -63.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds