Wall clock time and date at job start Mon Mar 30 2020 07:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46699 * 2 1 4 4 C 1.50694 * 109.46935 * 119.99283 * 2 1 3 5 5 H 1.08007 * 119.99966 * 114.48571 * 4 2 1 6 6 C 1.37880 * 120.00586 * 294.48699 * 4 2 1 7 7 N 1.31514 * 119.99949 * 164.57856 * 6 4 2 8 8 Si 1.86798 * 119.99452 * 344.84913 * 6 4 2 9 9 H 1.48499 * 109.47207 * 269.72267 * 8 6 4 10 10 H 1.48493 * 109.47413 * 29.72678 * 8 6 4 11 11 H 1.48502 * 109.46866 * 149.72545 * 8 6 4 12 12 N 1.46498 * 109.47545 * 239.99825 * 2 1 3 13 13 N 1.40105 * 119.99711 * 89.99626 * 12 2 1 14 14 C 1.29745 * 119.99504 * 180.02562 * 13 12 2 15 15 C 1.47488 * 119.99983 * 180.02562 * 14 13 12 16 16 C 1.39687 * 120.15670 * 359.72074 * 15 14 13 17 17 C 1.37938 * 119.84182 * 179.72510 * 16 15 14 18 18 C 1.38359 * 120.15439 * 0.57686 * 17 16 15 19 19 C 1.50700 * 119.84432 * 179.71801 * 18 17 16 20 20 C 1.53006 * 117.49566 * 8.72916 * 19 18 17 21 21 C 1.53004 * 117.49944 * 300.06888 * 19 18 17 22 22 C 1.38375 * 120.31784 * 359.70157 * 18 17 16 23 23 C 1.37933 * 120.15796 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.47326 * 293.58503 * 1 2 3 25 25 H 1.09000 * 109.47276 * 53.58864 * 1 2 3 26 26 H 1.09000 * 109.46682 * 173.58084 * 1 2 3 27 27 H 0.96995 * 120.00050 * 355.18399 * 7 6 4 28 28 H 0.96996 * 119.99766 * 270.00148 * 12 2 1 29 29 H 1.08007 * 120.00115 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.07447 * 0.02562 * 16 15 14 31 31 H 1.07991 * 119.91771 * 180.27557 * 17 16 15 32 32 H 1.08995 * 115.55643 * 154.39235 * 19 18 17 33 33 H 1.09003 * 117.49600 * 359.97438 * 20 19 18 34 34 H 1.08994 * 117.50449 * 145.02322 * 20 19 18 35 35 H 1.08997 * 117.50107 * 214.97551 * 21 19 18 36 36 H 1.08998 * 117.49728 * 359.97438 * 21 19 18 37 37 H 1.08006 * 119.92285 * 180.02562 * 22 18 17 38 38 H 1.07997 * 120.07885 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.5778 -1.6374 1.1340 6 6 1.7955 -0.1766 2.4796 7 7 1.9542 -0.9197 3.5530 8 14 1.2420 1.5997 2.6466 9 1 2.4318 2.4788 2.7762 10 1 0.4657 1.9916 1.4429 11 1 0.3885 1.7408 3.8536 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0300 -2.3747 14 6 2.6840 -0.5818 -3.4342 15 6 2.9303 0.1767 -4.6748 16 6 2.6940 1.5529 -4.7146 17 6 2.9320 2.2569 -5.8767 18 6 3.3923 1.6011 -7.0047 19 6 3.6440 2.3761 -8.2724 20 6 3.5701 3.9024 -8.1938 21 6 2.4586 3.1169 -8.8946 22 6 3.6232 0.2371 -6.9743 23 6 3.3959 -0.4785 -5.8172 24 1 -0.3634 0.4112 0.9418 25 1 -0.3634 0.6100 -0.8270 26 1 -0.3633 -1.0212 -0.1149 27 1 2.1696 -1.8612 3.4636 28 1 2.1801 -1.6467 -1.1720 29 1 2.8633 -1.6466 -3.4076 30 1 2.3304 2.0652 -3.8361 31 1 2.7539 3.3216 -5.9075 32 1 4.3785 1.9422 -8.9508 33 1 3.3390 4.3458 -7.2252 34 1 4.2556 4.4725 -8.8207 35 1 2.4135 3.1706 -9.9823 36 1 1.4967 3.0434 -8.3872 37 1 3.9829 -0.2683 -7.8584 38 1 3.5769 -1.5430 -5.7948 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841631349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:00 Heat of formation + Delta-G solvation = 83.936753 kcal Electronic energy + Delta-G solvation = -17688.885040 eV Core-core repulsion = 14918.618802 eV Total energy + Delta-G solvation = -2770.266238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60416 -37.21845 -36.27101 -34.10212 -31.96505 -30.84327 -30.42468 -27.56355 -24.86389 -24.02611 -23.03865 -22.31141 -21.03272 -20.11315 -19.85205 -17.79406 -16.87997 -16.35799 -15.48802 -15.08387 -14.65605 -14.34130 -13.85684 -13.39687 -13.27777 -13.19843 -12.77596 -12.62290 -12.36471 -11.95016 -11.77357 -11.54256 -11.31398 -11.19334 -10.92124 -10.64279 -10.57740 -10.50889 -10.16100 -9.73907 -9.57194 -9.03462 -8.84292 -8.59697 -8.43356 -6.99297 -6.56337 -4.24277 1.10000 1.53455 2.86513 3.36974 3.39681 3.53033 3.64274 3.65717 4.13780 4.40507 4.41255 4.67267 4.79527 4.90509 5.04546 5.08996 5.15076 5.21919 5.38033 5.50513 5.57790 5.65174 5.84342 5.88688 5.92325 6.08243 6.15589 6.29337 6.41602 6.54837 6.63175 6.64780 6.69060 6.81242 7.05629 7.08726 7.33305 7.83033 7.96304 8.25184 8.77215 9.13454 9.44727 10.79712 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.035425 B = 0.003468 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.203900 B = 8072.146326 C = 8557.594073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.275 3.725 3 H 0.036 0.964 4 C -0.616 4.616 5 H 0.060 0.940 6 C 0.039 3.961 7 N -0.899 5.899 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.283 1.283 12 N -0.618 5.618 13 N -0.198 5.198 14 C -0.008 4.008 15 C -0.011 4.011 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.113 4.113 23 C -0.110 4.110 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.270 0.730 28 H 0.373 0.627 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 5.593 -22.789 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.171 3.829 3 H 0.054 0.946 4 C -0.654 4.654 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.532 5.532 8 Si 0.869 3.131 9 H -0.210 1.210 10 H -0.193 1.193 11 H -0.209 1.209 12 N -0.354 5.354 13 N -0.010 5.010 14 C -0.216 4.216 15 C -0.013 4.013 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.066 4.066 19 C -0.131 4.131 20 C -0.216 4.216 21 C -0.209 4.209 22 C -0.131 4.131 23 C -0.131 4.131 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.210 0.790 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.045 7.714 -21.048 22.442 hybrid contribution 0.702 -2.636 -1.212 2.985 sum 1.747 5.078 -22.261 22.899 Atomic orbital electron populations 1.22573 0.99540 0.99921 0.99635 1.18855 0.89607 0.93788 0.80621 0.94611 1.22128 1.41021 1.11346 0.90938 0.92196 1.25719 0.93975 1.05557 0.91461 1.70816 1.43404 1.08357 1.30644 0.84142 0.77468 0.75205 0.76307 1.20992 1.19341 1.20901 1.48760 1.72335 1.07902 1.06438 1.73892 1.04838 1.28196 0.94093 1.23523 1.09045 0.96945 0.92116 1.18455 0.98308 0.92937 0.91633 1.21354 0.98709 0.93536 0.98057 1.20938 1.00493 0.99720 0.92638 1.19107 1.00490 0.93507 0.93533 1.21013 1.01655 0.93288 0.97182 1.23085 1.02303 0.93437 1.02789 1.23036 0.94057 1.03946 0.99863 1.20726 1.01329 0.93264 0.97800 1.21104 1.00136 0.99696 0.92137 0.92460 0.95403 0.93877 0.92028 0.79037 0.88021 0.85086 0.86201 0.87217 0.88231 0.88622 0.88683 0.88543 0.86260 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.80 37.16 0.33 -3.21 16 2 C 0.28 6.67 2.78 -69.09 -0.19 6.48 16 3 H 0.04 0.90 6.77 -51.93 -0.35 0.55 16 4 C -0.62 -16.97 9.03 -34.44 -0.31 -17.28 16 5 H 0.06 1.76 8.01 -52.48 -0.42 1.34 16 6 C 0.04 1.11 5.33 -17.82 -0.09 1.01 16 7 N -0.90 -26.99 13.70 55.43 0.76 -26.23 16 8 Si 1.04 24.56 26.17 -169.99 -4.45 20.11 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.27 -5.82 5.53 56.52 0.31 -5.51 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.62 -13.51 6.10 -5.89 -0.04 -13.54 16 13 N -0.20 -3.94 10.61 32.16 0.34 -3.60 16 14 C -0.01 -0.14 10.75 -14.67 -0.16 -0.29 16 15 C -0.01 -0.16 5.87 -105.05 -0.62 -0.78 16 16 C -0.10 -1.40 9.58 -39.15 -0.38 -1.77 16 17 C -0.12 -1.48 9.28 -39.65 -0.37 -1.84 16 18 C -0.07 -0.74 5.62 -104.53 -0.59 -1.32 16 19 C -0.11 -1.01 6.03 -91.77 -0.55 -1.57 16 20 C -0.18 -1.42 9.86 -26.69 -0.26 -1.68 16 21 C -0.17 -1.36 10.16 -26.69 -0.27 -1.63 16 22 C -0.11 -1.25 9.72 -39.64 -0.39 -1.64 16 23 C -0.11 -1.35 9.79 -39.15 -0.38 -1.73 16 24 H 0.06 1.28 5.06 -51.93 -0.26 1.02 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 28 H 0.37 7.74 8.56 -182.60 -1.56 6.17 16 29 H 0.10 1.53 8.02 -52.48 -0.42 1.11 16 30 H 0.13 2.01 7.55 -52.49 -0.40 1.62 16 31 H 0.12 1.26 6.00 -52.49 -0.32 0.95 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.81 6.16 -51.93 -0.32 0.49 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -29.83 318.76 -9.49 -39.31 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.67 Total: 6.41 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -4.23 Total: -27.26 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 1.06 Total: -43.37 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.45 Total: 20.11 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.83 -9.49 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.250 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds