Wall clock time and date at job start Mon Mar 30 2020 07:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46699 * 2 1 4 4 C 1.50694 * 109.46935 * 119.99283 * 2 1 3 5 5 H 1.08007 * 119.99966 * 114.48571 * 4 2 1 6 6 C 1.37880 * 120.00586 * 294.48699 * 4 2 1 7 7 N 1.31514 * 119.99949 * 164.57856 * 6 4 2 8 8 Si 1.86798 * 119.99452 * 344.84913 * 6 4 2 9 9 H 1.48499 * 109.47207 * 269.72267 * 8 6 4 10 10 H 1.48493 * 109.47413 * 29.72678 * 8 6 4 11 11 H 1.48502 * 109.46866 * 149.72545 * 8 6 4 12 12 N 1.46498 * 109.47545 * 239.99825 * 2 1 3 13 13 N 1.40105 * 119.99711 * 89.99626 * 12 2 1 14 14 C 1.29745 * 119.99504 * 180.02562 * 13 12 2 15 15 C 1.47488 * 119.99983 * 180.02562 * 14 13 12 16 16 C 1.39687 * 120.15670 * 359.72074 * 15 14 13 17 17 C 1.37938 * 119.84182 * 179.72510 * 16 15 14 18 18 C 1.38359 * 120.15439 * 0.57686 * 17 16 15 19 19 C 1.50700 * 119.84432 * 179.71801 * 18 17 16 20 20 C 1.53006 * 117.49566 * 8.72916 * 19 18 17 21 21 C 1.53004 * 117.49944 * 300.06888 * 19 18 17 22 22 C 1.38375 * 120.31784 * 359.70157 * 18 17 16 23 23 C 1.37933 * 120.15796 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.47326 * 293.58503 * 1 2 3 25 25 H 1.09000 * 109.47276 * 53.58864 * 1 2 3 26 26 H 1.09000 * 109.46682 * 173.58084 * 1 2 3 27 27 H 0.96995 * 120.00050 * 355.18399 * 7 6 4 28 28 H 0.96996 * 119.99766 * 270.00148 * 12 2 1 29 29 H 1.08007 * 120.00115 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.07447 * 0.02562 * 16 15 14 31 31 H 1.07991 * 119.91771 * 180.27557 * 17 16 15 32 32 H 1.08995 * 115.55643 * 154.39235 * 19 18 17 33 33 H 1.09003 * 117.49600 * 359.97438 * 20 19 18 34 34 H 1.08994 * 117.50449 * 145.02322 * 20 19 18 35 35 H 1.08997 * 117.50107 * 214.97551 * 21 19 18 36 36 H 1.08998 * 117.49728 * 359.97438 * 21 19 18 37 37 H 1.08006 * 119.92285 * 180.02562 * 22 18 17 38 38 H 1.07997 * 120.07885 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.5778 -1.6374 1.1340 6 6 1.7955 -0.1766 2.4796 7 7 1.9542 -0.9197 3.5530 8 14 1.2420 1.5997 2.6466 9 1 2.4318 2.4788 2.7762 10 1 0.4657 1.9916 1.4429 11 1 0.3885 1.7408 3.8536 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0300 -2.3747 14 6 2.6840 -0.5818 -3.4342 15 6 2.9303 0.1767 -4.6748 16 6 2.6940 1.5529 -4.7146 17 6 2.9320 2.2569 -5.8767 18 6 3.3923 1.6011 -7.0047 19 6 3.6440 2.3761 -8.2724 20 6 3.5701 3.9024 -8.1938 21 6 2.4586 3.1169 -8.8946 22 6 3.6232 0.2371 -6.9743 23 6 3.3959 -0.4785 -5.8172 24 1 -0.3634 0.4112 0.9418 25 1 -0.3634 0.6100 -0.8270 26 1 -0.3633 -1.0212 -0.1149 27 1 2.1696 -1.8612 3.4636 28 1 2.1801 -1.6467 -1.1720 29 1 2.8633 -1.6466 -3.4076 30 1 2.3304 2.0652 -3.8361 31 1 2.7539 3.3216 -5.9075 32 1 4.3785 1.9422 -8.9508 33 1 3.3390 4.3458 -7.2252 34 1 4.2556 4.4725 -8.8207 35 1 2.4135 3.1706 -9.9823 36 1 1.4967 3.0434 -8.3872 37 1 3.9829 -0.2683 -7.8584 38 1 3.5769 -1.5430 -5.7948 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841631349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:59 Heat of formation + Delta-G solvation = 67.185867 kcal Electronic energy + Delta-G solvation = -17689.611413 eV Core-core repulsion = 14918.618802 eV Total energy + Delta-G solvation = -2770.992611 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52320 -38.39658 -37.49777 -35.82093 -33.79260 -31.84559 -31.71519 -29.02766 -26.83829 -25.18294 -23.91708 -23.01476 -22.33465 -21.74550 -20.88533 -19.78691 -17.85238 -17.78633 -16.78906 -16.07097 -15.93035 -15.38904 -15.22694 -14.76921 -14.66499 -14.56030 -14.22575 -14.12608 -13.75603 -13.44929 -13.04830 -12.80705 -12.46384 -12.42428 -12.09315 -12.02662 -11.88112 -11.52617 -11.43975 -11.18914 -11.10772 -10.99605 -10.58363 -9.81496 -9.74298 -8.88356 -8.38475 -6.48520 0.02457 0.56341 1.48257 1.51355 1.65904 1.71251 2.10694 2.44772 2.83957 2.99025 3.25340 3.67485 3.89566 3.94676 4.07060 4.16043 4.20997 4.32357 4.45608 4.51807 4.56023 4.75266 4.76974 4.80008 4.85989 4.96055 4.99506 5.14149 5.16729 5.21528 5.30414 5.31882 5.48273 5.59470 5.69215 5.74298 5.91180 5.94888 6.11045 6.19063 6.64057 7.29177 7.63165 8.54908 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.035425 B = 0.003468 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.203900 B = 8072.146326 C = 8557.594073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.282 3.718 3 H 0.028 0.972 4 C -0.616 4.616 5 H 0.026 0.974 6 C -0.009 4.009 7 N -0.930 5.930 8 Si 1.080 2.920 9 H -0.274 1.274 10 H -0.239 1.239 11 H -0.279 1.279 12 N -0.642 5.642 13 N -0.241 5.241 14 C 0.029 3.971 15 C -0.048 4.048 16 C -0.108 4.108 17 C -0.129 4.129 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.179 4.179 21 C -0.166 4.166 22 C -0.115 4.115 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.256 0.744 28 H 0.371 0.629 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 6.916 -26.381 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.177 3.823 3 H 0.046 0.954 4 C -0.655 4.655 5 H 0.044 0.956 6 C -0.208 4.208 7 N -0.565 5.565 8 Si 0.901 3.099 9 H -0.200 1.200 10 H -0.163 1.163 11 H -0.205 1.205 12 N -0.378 5.378 13 N -0.050 5.050 14 C -0.181 4.181 15 C -0.050 4.050 16 C -0.128 4.128 17 C -0.146 4.146 18 C -0.057 4.057 19 C -0.143 4.143 20 C -0.215 4.215 21 C -0.203 4.203 22 C -0.133 4.133 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.208 0.792 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.211 9.031 -24.668 26.297 hybrid contribution 0.793 -3.089 -0.450 3.221 sum 2.004 5.942 -25.118 25.889 Atomic orbital electron populations 1.22455 0.98131 1.00221 1.00181 1.18528 0.90556 0.92802 0.80429 0.95426 1.22315 1.40073 1.10141 0.92949 0.95583 1.27110 0.93571 1.08923 0.91234 1.70936 1.46038 1.07860 1.31692 0.83680 0.77942 0.70733 0.77586 1.20033 1.16279 1.20471 1.48364 1.74872 1.07611 1.06929 1.73943 1.08504 1.28253 0.94268 1.24114 1.04184 0.97997 0.91773 1.18538 1.01487 0.93207 0.91775 1.21353 0.99250 0.93802 0.98400 1.21107 1.00691 1.00489 0.92354 1.19491 0.98192 0.94027 0.94014 1.21123 1.02935 0.93772 0.96498 1.23177 1.02583 0.92845 1.02931 1.23093 0.93329 1.03040 1.00867 1.21113 1.00533 0.93262 0.98388 1.21390 0.98344 1.00879 0.91415 0.92581 0.93716 0.94043 0.93540 0.79204 0.86391 0.86860 0.84896 0.85461 0.88764 0.87028 0.86875 0.89392 0.83161 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 8.80 71.98 0.63 -6.06 16 2 C 0.28 13.83 2.78 44.24 0.12 13.95 16 3 H 0.03 1.40 6.77 -2.39 -0.02 1.38 16 4 C -0.62 -35.09 9.03 25.60 0.23 -34.86 16 5 H 0.03 1.61 8.01 -2.91 -0.02 1.59 16 6 C -0.01 -0.50 5.33 84.66 0.45 -0.05 16 7 N -0.93 -57.65 13.70 21.45 0.29 -57.36 16 8 Si 1.08 49.48 26.17 68.60 1.80 51.28 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.24 -9.77 5.53 99.48 0.55 -9.22 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.64 -28.59 6.10 -172.53 -1.05 -29.64 16 13 N -0.24 -9.64 10.61 -52.16 -0.55 -10.20 16 14 C 0.03 0.96 10.75 87.44 0.94 1.90 16 15 C -0.05 -1.35 5.87 -20.14 -0.12 -1.47 16 16 C -0.11 -3.05 9.58 22.55 0.22 -2.83 16 17 C -0.13 -2.95 9.28 22.23 0.21 -2.74 16 18 C -0.06 -1.10 5.62 -19.80 -0.11 -1.21 16 19 C -0.13 -1.79 6.03 -11.54 -0.07 -1.86 16 20 C -0.18 -2.27 9.86 30.62 0.30 -1.97 16 21 C -0.17 -2.08 10.16 30.62 0.31 -1.77 16 22 C -0.12 -2.13 9.72 22.23 0.22 -1.91 16 23 C -0.10 -2.16 9.79 22.55 0.22 -1.94 16 24 H 0.06 2.45 5.06 -2.39 -0.01 2.44 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.26 16.01 8.73 -92.71 -0.81 15.20 16 28 H 0.37 15.94 8.56 -213.32 -1.83 14.12 16 29 H 0.12 3.40 8.02 -2.91 -0.02 3.38 16 30 H 0.11 3.56 7.55 -2.91 -0.02 3.53 16 31 H 0.13 2.60 6.00 -2.92 -0.02 2.58 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.30 6.16 -2.39 -0.01 1.29 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.24 318.76 3.07 -63.17 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.96 Total: 25.56 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 3.55 Total: -42.81 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -1.31 Total: -97.19 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.80 Total: 51.28 kcal Total: -66.24 3.07 -63.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.351 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds