Wall clock time and date at job start Mon Mar 30 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37783 * 119.95846 * 2 1 4 4 C 1.38337 * 120.14228 * 180.02562 * 3 2 1 5 5 C 1.38278 * 120.16721 * 359.97438 * 4 3 2 6 6 C 1.38230 * 120.32281 * 359.97438 * 5 4 3 7 7 C 1.39317 * 119.90878 * 0.02562 * 6 5 4 8 8 C 1.47773 * 110.64889 * 180.02562 * 7 6 5 9 9 N 1.29740 * 126.08651 * 179.97438 * 8 7 6 10 10 N 1.40100 * 120.00090 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00195 * 180.02562 * 10 9 8 12 12 H 1.09006 * 109.46882 * 30.00424 * 11 10 9 13 13 C 1.53001 * 109.47111 * 270.00177 * 11 10 9 14 14 C 1.50696 * 109.47106 * 149.99967 * 11 10 9 15 15 H 1.07995 * 120.00332 * 35.00496 * 14 11 10 16 16 C 1.37885 * 119.99884 * 215.00254 * 14 11 10 17 17 N 1.31516 * 119.99605 * 184.91533 * 16 14 11 18 18 Si 1.86794 * 120.00188 * 4.91615 * 16 14 11 19 19 H 1.48508 * 109.46816 * 84.83495 * 18 16 14 20 20 H 1.48502 * 109.47275 * 204.83416 * 18 16 14 21 21 H 1.48500 * 109.47139 * 324.83643 * 18 16 14 22 22 C 1.50956 * 107.93374 * 359.91769 * 8 7 6 23 23 C 1.50993 * 130.45473 * 180.02562 * 6 5 4 24 24 H 1.09001 * 109.46817 * 89.99881 * 1 2 3 25 25 H 1.09001 * 109.47228 * 209.99312 * 1 2 3 26 26 H 1.09000 * 109.47035 * 330.00189 * 1 2 3 27 27 H 1.08005 * 119.92616 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.91661 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.83679 * 180.02562 * 5 4 3 30 30 H 0.97001 * 119.99515 * 0.02562 * 10 9 8 31 31 H 1.08998 * 109.46863 * 55.03134 * 13 11 10 32 32 H 1.09000 * 109.46828 * 175.02344 * 13 11 10 33 33 H 1.08996 * 109.47245 * 295.02261 * 13 11 10 34 34 H 0.96995 * 119.99625 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.27232 * 241.06414 * 22 8 7 36 36 H 1.09002 * 110.27379 * 119.08850 * 22 8 7 37 37 H 1.08999 * 110.07643 * 60.77547 * 23 6 5 38 38 H 1.08997 * 110.12090 * 299.25090 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1937 0.0000 4 6 3.5784 1.1982 -0.0005 5 6 4.2771 0.0049 -0.0005 6 6 3.6001 -1.2002 0.0005 7 6 2.2070 -1.2144 0.0011 8 6 1.7000 -2.6024 0.0028 9 7 0.4530 -2.9605 0.0041 10 7 0.1145 -4.3200 0.0052 11 6 -1.2936 -4.7243 0.0061 12 1 -1.8887 -3.9695 -0.5080 13 6 -1.7831 -4.8641 1.4490 14 6 -1.4371 -6.0460 -0.7034 15 1 -0.6592 -6.7905 -0.6209 16 6 -2.5619 -6.3049 -1.4578 17 7 -2.7327 -7.4920 -1.9974 18 14 -3.8428 -4.9696 -1.7135 19 1 -3.4421 -4.1120 -2.8578 20 1 -5.1590 -5.5946 -2.0002 21 1 -3.9454 -4.1405 -0.4857 22 6 2.8895 -3.5318 0.0013 23 6 4.1219 -2.6171 0.0013 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 1.6531 2.1280 0.0004 28 1 4.1140 2.1360 -0.0010 29 1 5.3571 0.0146 -0.0005 30 1 0.8125 -4.9935 0.0053 31 1 -1.5979 -3.9345 1.9871 32 1 -2.8518 -5.0782 1.4509 33 1 -1.2484 -5.6791 1.9367 34 1 -3.5241 -7.6743 -2.5278 35 1 2.8810 -4.1547 -0.8931 36 1 2.8827 -4.1555 0.8953 37 1 4.7206 -2.7949 0.8946 38 1 4.7205 -2.7967 -0.8918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841631376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:52 Heat of formation + Delta-G solvation = 49.349731 kcal Electronic energy + Delta-G solvation = -18638.066582 eV Core-core repulsion = 15866.300538 eV Total energy + Delta-G solvation = -2771.766044 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94612 -36.81629 -35.17734 -33.59895 -32.38097 -31.22054 -28.86936 -27.91029 -26.63339 -25.31492 -24.26807 -21.93490 -20.61428 -20.22884 -19.09007 -17.33784 -16.23011 -15.41684 -15.23310 -15.15810 -14.55817 -14.26451 -13.66565 -13.35179 -12.94913 -12.78751 -12.72089 -12.53142 -12.30748 -11.95981 -11.85035 -11.64997 -11.49979 -11.23332 -11.05994 -10.85434 -10.73644 -10.67539 -10.28775 -9.93483 -9.49147 -9.18009 -8.77786 -8.65818 -8.44548 -6.80384 -6.26151 -4.29304 1.19355 1.49415 2.95847 3.21609 3.30004 3.33023 3.63778 3.99404 4.28160 4.52287 4.87143 5.04207 5.05941 5.14195 5.26751 5.30369 5.40700 5.49466 5.57376 5.81901 5.87383 5.96634 6.06810 6.11062 6.11598 6.18612 6.29314 6.41394 6.51728 6.55386 6.60873 6.66755 6.82043 6.84659 7.10194 7.15682 7.27175 7.52865 8.06560 8.36330 8.76281 9.22053 9.35158 10.85947 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.005087 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.027114 B = 5502.932756 C = 6056.293258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.127 4.127 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.087 4.087 7 C -0.017 4.017 8 C 0.023 3.977 9 N -0.189 5.189 10 N -0.618 5.618 11 C 0.265 3.735 12 H 0.043 0.957 13 C -0.151 4.151 14 C -0.527 4.527 15 H 0.077 0.923 16 C 0.081 3.919 17 N -0.888 5.888 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.103 4.103 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.373 0.627 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.268 0.732 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 14.238 4.385 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.090 4.090 7 C -0.019 4.019 8 C -0.165 4.165 9 N -0.001 5.001 10 N -0.354 5.354 11 C 0.162 3.838 12 H 0.061 0.939 13 C -0.210 4.210 14 C -0.566 4.566 15 H 0.095 0.905 16 C -0.124 4.124 17 N -0.525 5.525 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.143 4.143 23 C -0.109 4.109 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.210 0.790 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.157 14.328 4.269 18.075 hybrid contribution 0.285 -0.114 -0.273 0.411 sum 10.442 14.215 3.996 18.085 Atomic orbital electron populations 1.20874 0.90890 1.03210 1.02592 1.19896 0.96334 0.91501 0.98334 1.20832 0.94189 0.97070 1.02369 1.20987 0.94164 0.97487 1.01308 1.20417 0.99359 0.91057 1.02627 1.20496 0.93608 0.94914 0.99935 1.18823 0.92766 0.90302 1.00059 1.22524 0.90128 0.93022 1.10795 1.73968 1.16734 1.03442 1.05937 1.49072 1.08475 0.97372 1.80498 1.18916 0.76940 0.95174 0.92786 0.93912 1.22344 1.00599 0.98996 0.99091 1.21026 1.06397 0.98726 1.30482 0.90517 1.24944 0.97763 0.95495 0.94161 1.69879 1.28497 1.20873 1.33241 0.86855 0.80854 0.82271 0.79614 1.19846 1.21155 1.18596 1.21095 0.93029 0.97580 1.02599 1.20642 0.97517 0.90288 1.02421 0.91313 0.89561 0.92368 0.86164 0.86219 0.86418 0.78971 0.95395 0.92972 0.93501 0.92187 0.90281 0.90545 0.90339 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.68 36.01 0.35 -1.38 16 2 C -0.06 -0.86 5.93 -104.06 -0.62 -1.48 16 3 C -0.13 -1.56 9.67 -39.71 -0.38 -1.94 16 4 C -0.12 -1.34 10.04 -39.53 -0.40 -1.73 16 5 C -0.12 -1.35 10.03 -39.57 -0.40 -1.75 16 6 C -0.09 -1.18 6.20 -104.08 -0.65 -1.82 16 7 C -0.02 -0.27 6.02 -104.87 -0.63 -0.90 16 8 C 0.02 0.41 7.33 -79.45 -0.58 -0.17 16 9 N -0.19 -3.80 9.60 35.24 0.34 -3.46 16 10 N -0.62 -13.27 6.07 -5.88 -0.04 -13.30 16 11 C 0.26 6.28 2.89 -69.09 -0.20 6.08 16 12 H 0.04 1.06 5.29 -51.93 -0.27 0.79 16 13 C -0.15 -3.26 9.50 37.16 0.35 -2.90 16 14 C -0.53 -14.29 9.08 -34.44 -0.31 -14.60 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 18 Si 0.88 21.10 26.99 -169.99 -4.59 16.51 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.26 -6.03 6.82 56.52 0.39 -5.64 16 22 C -0.10 -1.48 5.66 -27.51 -0.16 -1.63 16 23 C -0.07 -0.84 6.80 -27.49 -0.19 -1.03 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.09 1.44 6.33 -51.93 -0.33 1.11 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.37 7.60 7.67 -182.60 -1.40 6.20 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -29.57 315.00 -9.32 -38.89 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.65 Total: 5.11 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -3.90 Total: -23.11 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.08 Total: -42.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.57 -9.32 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.238 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds