Wall clock time and date at job start Mon Mar 30 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37783 * 119.95846 * 2 1 4 4 C 1.38337 * 120.14228 * 180.02562 * 3 2 1 5 5 C 1.38278 * 120.16721 * 359.97438 * 4 3 2 6 6 C 1.38230 * 120.32281 * 359.97438 * 5 4 3 7 7 C 1.39317 * 119.90878 * 0.02562 * 6 5 4 8 8 C 1.47773 * 110.64889 * 180.02562 * 7 6 5 9 9 N 1.29740 * 126.08651 * 179.97438 * 8 7 6 10 10 N 1.40100 * 120.00090 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00195 * 180.02562 * 10 9 8 12 12 H 1.09006 * 109.46882 * 30.00424 * 11 10 9 13 13 C 1.53001 * 109.47111 * 270.00177 * 11 10 9 14 14 C 1.50696 * 109.47106 * 149.99967 * 11 10 9 15 15 H 1.07995 * 120.00332 * 35.00496 * 14 11 10 16 16 C 1.37885 * 119.99884 * 215.00254 * 14 11 10 17 17 N 1.31516 * 119.99605 * 184.91533 * 16 14 11 18 18 Si 1.86794 * 120.00188 * 4.91615 * 16 14 11 19 19 H 1.48508 * 109.46816 * 84.83495 * 18 16 14 20 20 H 1.48502 * 109.47275 * 204.83416 * 18 16 14 21 21 H 1.48500 * 109.47139 * 324.83643 * 18 16 14 22 22 C 1.50956 * 107.93374 * 359.91769 * 8 7 6 23 23 C 1.50993 * 130.45473 * 180.02562 * 6 5 4 24 24 H 1.09001 * 109.46817 * 89.99881 * 1 2 3 25 25 H 1.09001 * 109.47228 * 209.99312 * 1 2 3 26 26 H 1.09000 * 109.47035 * 330.00189 * 1 2 3 27 27 H 1.08005 * 119.92616 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.91661 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.83679 * 180.02562 * 5 4 3 30 30 H 0.97001 * 119.99515 * 0.02562 * 10 9 8 31 31 H 1.08998 * 109.46863 * 55.03134 * 13 11 10 32 32 H 1.09000 * 109.46828 * 175.02344 * 13 11 10 33 33 H 1.08996 * 109.47245 * 295.02261 * 13 11 10 34 34 H 0.96995 * 119.99625 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.27232 * 241.06414 * 22 8 7 36 36 H 1.09002 * 110.27379 * 119.08850 * 22 8 7 37 37 H 1.08999 * 110.07643 * 60.77547 * 23 6 5 38 38 H 1.08997 * 110.12090 * 299.25090 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1937 0.0000 4 6 3.5784 1.1982 -0.0005 5 6 4.2771 0.0049 -0.0005 6 6 3.6001 -1.2002 0.0005 7 6 2.2070 -1.2144 0.0011 8 6 1.7000 -2.6024 0.0028 9 7 0.4530 -2.9605 0.0041 10 7 0.1145 -4.3200 0.0052 11 6 -1.2936 -4.7243 0.0061 12 1 -1.8887 -3.9695 -0.5080 13 6 -1.7831 -4.8641 1.4490 14 6 -1.4371 -6.0460 -0.7034 15 1 -0.6592 -6.7905 -0.6209 16 6 -2.5619 -6.3049 -1.4578 17 7 -2.7327 -7.4920 -1.9974 18 14 -3.8428 -4.9696 -1.7135 19 1 -3.4421 -4.1120 -2.8578 20 1 -5.1590 -5.5946 -2.0002 21 1 -3.9454 -4.1405 -0.4857 22 6 2.8895 -3.5318 0.0013 23 6 4.1219 -2.6171 0.0013 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 1.6531 2.1280 0.0004 28 1 4.1140 2.1360 -0.0010 29 1 5.3571 0.0146 -0.0005 30 1 0.8125 -4.9935 0.0053 31 1 -1.5979 -3.9345 1.9871 32 1 -2.8518 -5.0782 1.4509 33 1 -1.2484 -5.6791 1.9367 34 1 -3.5241 -7.6743 -2.5278 35 1 2.8810 -4.1547 -0.8931 36 1 2.8827 -4.1555 0.8953 37 1 4.7206 -2.7949 0.8946 38 1 4.7205 -2.7967 -0.8918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841631376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:52 Heat of formation + Delta-G solvation = 32.701931 kcal Electronic energy + Delta-G solvation = -18638.788485 eV Core-core repulsion = 15866.300538 eV Total energy + Delta-G solvation = -2772.487947 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00467 -38.21504 -36.59205 -35.09067 -33.90806 -32.77108 -29.90669 -29.35207 -27.79452 -27.29714 -25.46689 -23.07016 -21.96734 -21.59895 -20.51335 -19.06283 -17.70991 -16.99802 -16.30010 -16.26829 -15.84487 -15.52755 -15.26035 -14.59834 -14.46429 -14.44103 -13.97886 -13.89350 -13.78260 -13.12309 -13.07606 -12.95027 -12.81919 -12.73188 -12.70176 -12.35281 -12.09875 -11.89902 -11.70901 -11.67875 -11.29760 -10.86760 -10.71706 -9.90080 -9.40944 -8.40332 -8.29698 -6.47367 0.10060 0.52721 1.30388 1.33039 1.43525 1.72382 2.11813 2.26767 2.96136 3.01671 3.47604 3.80089 4.00322 4.12596 4.26473 4.28043 4.32380 4.43062 4.51841 4.57110 4.75850 4.80922 4.83560 4.85117 4.88900 4.95829 5.07190 5.10420 5.12242 5.19392 5.29008 5.41250 5.48866 5.59932 5.62664 5.76790 5.87097 6.14323 6.17344 6.50913 6.62591 7.21020 7.73313 8.75583 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.005087 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.027114 B = 5502.932756 C = 6056.293258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.085 4.085 7 C -0.066 4.066 8 C 0.044 3.956 9 N -0.231 5.231 10 N -0.639 5.639 11 C 0.273 3.727 12 H 0.032 0.968 13 C -0.143 4.143 14 C -0.529 4.529 15 H 0.042 0.958 16 C 0.028 3.972 17 N -0.935 5.935 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.246 1.246 22 C -0.109 4.109 23 C -0.066 4.066 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.372 0.628 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.271 0.729 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.538 17.592 4.979 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.076 4.076 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.136 4.136 6 C -0.088 4.088 7 C -0.068 4.068 8 C -0.146 4.146 9 N -0.041 5.041 10 N -0.375 5.375 11 C 0.169 3.831 12 H 0.050 0.950 13 C -0.202 4.202 14 C -0.568 4.568 15 H 0.060 0.940 16 C -0.172 4.172 17 N -0.573 5.573 18 Si 0.761 3.239 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.169 1.169 22 C -0.149 4.149 23 C -0.103 4.103 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.169 0.831 30 H 0.209 0.791 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.213 17.695 4.879 22.047 hybrid contribution -0.049 -0.965 -0.439 1.062 sum 12.163 16.730 4.440 21.155 Atomic orbital electron populations 1.20825 0.91473 1.03018 1.02043 1.20106 0.96334 0.92317 0.98842 1.21153 0.95147 0.96944 1.01745 1.21490 0.93756 0.98955 0.98264 1.20839 1.01113 0.90245 1.01362 1.20796 0.92608 0.96405 0.98989 1.19036 0.94233 0.89699 1.03847 1.23309 0.90352 0.95073 1.05816 1.74015 1.18307 1.01894 1.09836 1.48534 1.07278 0.98347 1.83342 1.18610 0.78394 0.92812 0.93252 0.95038 1.22218 1.00394 0.99654 0.97944 1.21227 1.05384 0.99668 1.30538 0.93957 1.25724 0.99931 0.97463 0.94041 1.70001 1.29618 1.22899 1.34815 0.85900 0.78430 0.79625 0.79958 1.19969 1.20261 1.16919 1.21221 0.93288 0.97763 1.02613 1.20681 0.96391 0.88691 1.04499 0.92073 0.92238 0.90018 0.83821 0.82575 0.83139 0.79087 0.94015 0.92979 0.93537 0.91982 0.90702 0.90028 0.87966 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 9.68 71.24 0.69 -2.65 16 2 C -0.07 -2.07 5.93 -19.50 -0.12 -2.18 16 3 C -0.13 -2.79 9.67 22.19 0.21 -2.57 16 4 C -0.11 -1.83 10.04 22.30 0.22 -1.61 16 5 C -0.12 -2.18 10.03 22.28 0.22 -1.95 16 6 C -0.09 -2.05 6.20 -19.51 -0.12 -2.17 16 7 C -0.07 -2.01 6.02 -20.03 -0.12 -2.13 16 8 C 0.04 1.54 7.33 45.47 0.33 1.87 16 9 N -0.23 -9.55 9.60 -42.42 -0.41 -9.96 16 10 N -0.64 -28.49 6.07 -172.53 -1.05 -29.54 16 11 C 0.27 13.34 2.89 44.24 0.13 13.47 16 12 H 0.03 1.60 5.29 -2.38 -0.01 1.59 16 13 C -0.14 -6.22 9.50 71.98 0.68 -5.54 16 14 C -0.53 -29.91 9.08 25.60 0.23 -29.67 16 15 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 16 C 0.03 1.63 5.47 84.66 0.46 2.09 16 17 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 18 Si 0.94 44.30 26.99 68.60 1.85 46.15 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.25 -10.88 6.82 99.48 0.68 -10.20 16 22 C -0.11 -3.05 5.66 30.09 0.17 -2.88 16 23 C -0.07 -1.36 6.80 30.10 0.20 -1.16 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 2.03 6.33 -2.39 -0.02 2.01 16 26 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 27 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.37 15.98 7.67 -213.32 -1.64 14.34 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.85 315.00 3.29 -63.56 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.61 Total: 23.57 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 3.21 Total: -37.08 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -1.16 Total: -96.20 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.85 Total: 46.15 kcal Total: -66.85 3.29 -63.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841631376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.258 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds