Wall clock time and date at job start Mon Mar 30 2020 06:35:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31590 * 1
3 3 Si 1.86795 * 119.99894 * 2 1
4 4 H 1.48503 * 109.46896 * 240.27122 * 3 2 1
5 5 H 1.48495 * 109.47162 * 0.26971 * 3 2 1
6 6 H 1.48492 * 109.47389 * 120.27148 * 3 2 1
7 7 C 1.38765 * 119.99957 * 180.26759 * 2 1 3
8 8 H 1.07999 * 119.99882 * 179.72963 * 7 2 1
9 9 S 1.76198 * 119.99824 * 359.72969 * 7 2 1
10 10 C 1.76204 * 99.99829 * 179.97438 * 9 7 2
11 11 C 1.39734 * 120.05665 * 180.02562 * 10 9 7
12 12 C 1.38270 * 118.00998 * 179.97438 * 11 10 9
13 13 C 1.39963 * 117.97869 * 359.97438 * 12 11 10
14 14 C 1.48273 * 120.08761 * 179.97438 * 13 12 11
15 15 C 1.39837 * 120.54496 * 180.02562 * 14 13 12
16 16 C 1.38389 * 118.30725 * 179.97438 * 15 14 13
17 17 C 1.38326 * 119.28862 * 359.97438 * 16 15 14
18 18 N 1.31891 * 121.04635 * 0.02566 * 17 16 15
19 19 C 1.31732 * 121.85826 * 359.67645 * 18 17 16
20 20 N 1.32698 * 119.82354 * 0.02562 * 13 12 11
21 21 N 1.28352 * 122.12844 * 359.73104 * 20 13 12
22 22 H 0.97000 * 120.00301 * 359.73329 * 1 2 3
23 23 H 1.08001 * 120.99819 * 359.95146 * 11 10 9
24 24 H 1.07998 * 121.01116 * 180.02562 * 12 11 10
25 25 H 1.08001 * 120.84229 * 359.95860 * 15 14 13
26 26 H 1.07999 * 120.35419 * 180.02562 * 16 15 14
27 27 H 1.07999 * 119.47589 * 180.02562 * 17 16 15
28 28 H 1.08003 * 119.71010 * 180.31652 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3159 0.0000 0.0000
3 14 2.2498 1.6177 0.0000
4 1 3.0986 1.6992 -1.2158
5 1 1.2849 2.7464 0.0066
6 1 3.1085 1.6936 1.2091
7 6 2.0097 -1.2017 -0.0056
8 1 3.0897 -1.2017 -0.0100
9 16 1.1287 -2.7276 -0.0055
10 6 2.4785 -3.8602 -0.0144
11 6 2.2372 -5.2366 -0.0174
12 6 3.3274 -6.0870 -0.0250
13 6 4.6054 -5.5161 -0.0297
14 6 5.8073 -6.3844 -0.0373
15 6 7.0886 -5.8243 -0.0416
16 6 8.1778 -6.6779 -0.0481
17 6 7.9664 -8.0449 -0.0496
18 7 6.7457 -8.5443 -0.0454
19 6 5.6785 -7.7721 -0.0334
20 7 4.7384 -4.1959 -0.0264
21 7 3.7254 -3.4077 -0.0240
22 1 -0.4850 0.8400 0.0039
23 1 1.2293 -5.6246 -0.0135
24 1 3.1969 -7.1590 -0.0279
25 1 7.2245 -4.7529 -0.0401
26 1 9.1822 -6.2809 -0.0511
27 1 8.8143 -8.7138 -0.0542
28 1 4.6950 -8.2184 -0.0252
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000005442326.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:35:20
Heat of formation + Delta-G solvation = 61.703999 kcal
Electronic energy + Delta-G solvation = -15344.273720 eV
Core-core repulsion = 12678.704168 eV
Total energy + Delta-G solvation = -2665.569552 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 259.047 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.82467 -40.66511 -34.98309 -34.79622 -34.06714 -32.97500 -31.07386 -27.88100
-26.06495 -25.92661 -23.85797 -23.21835 -20.13372 -18.80367 -18.36799 -17.74570
-17.43548 -16.98575 -16.68941 -16.02381 -15.44579 -15.08447 -14.79191 -14.71335
-14.09340 -13.94590 -13.57437 -13.04432 -13.03155 -12.80444 -12.19408 -12.17286
-11.64186 -11.34440 -11.15642 -11.14059 -10.67664 -10.62692 -10.29668 -9.89082
-8.76444 -8.55715 -6.32312 -0.61657 -0.00527 0.28561 0.60442 1.10298
1.35343 1.38477 1.47844 2.08946 2.51493 2.86294 2.91886 3.01824
3.12197 3.55455 3.60865 3.84844 3.86506 4.00154 4.04142 4.18170
4.28435 4.49739 4.76966 4.80529 5.00261 5.14079 5.28514 5.39004
5.45645 5.71621 6.22271 6.92712 6.95721 7.82485 8.52791
Molecular weight = 259.05amu
Principal moments of inertia in cm(-1)
A = 0.038171 B = 0.004536 C = 0.004060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.355915 B = 6171.493659 C = 6895.004418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.030 3.970
3 Si 0.992 3.008
4 H -0.268 1.268
5 H -0.266 1.266
6 H -0.268 1.268
7 C -0.565 4.565
8 H 0.092 0.908
9 S 0.096 5.904
10 C 0.022 3.978
11 C -0.117 4.117
12 C -0.081 4.081
13 C 0.058 3.942
14 C -0.097 4.097
15 C -0.062 4.062
16 C -0.166 4.166
17 C 0.100 3.900
18 N -0.501 5.501
19 C 0.116 3.884
20 N -0.256 5.256
21 N -0.290 5.290
22 H 0.280 0.720
23 H 0.180 0.820
24 H 0.198 0.802
25 H 0.132 0.868
26 H 0.167 0.833
27 H 0.191 0.809
28 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.596 -15.044 -0.050 18.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.177 4.177
3 Si 0.814 3.186
4 H -0.193 1.193
5 H -0.191 1.191
6 H -0.193 1.193
7 C -0.713 4.713
8 H 0.110 0.890
9 S 0.344 5.656
10 C -0.232 4.232
11 C -0.151 4.151
12 C -0.110 4.110
13 C -0.094 4.094
14 C -0.101 4.101
15 C -0.090 4.090
16 C -0.185 4.185
17 C -0.057 4.057
18 N -0.210 5.210
19 C -0.043 4.043
20 N -0.099 5.099
21 N -0.138 5.138
22 H 0.090 0.910
23 H 0.197 0.803
24 H 0.215 0.785
25 H 0.150 0.850
26 H 0.185 0.815
27 H 0.208 0.792
28 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 9.921 -14.467 -0.057 17.542
hybrid contribution 0.652 1.360 0.002 1.508
sum 10.573 -13.108 -0.055 16.841
Atomic orbital electron populations
1.70000 1.07260 1.29680 1.46586 1.26000 0.96025 1.02966 0.92683
0.85086 0.78111 0.76076 0.79345 1.19303 1.19059 1.19283 1.23508
0.97109 0.91679 1.58982 0.89006 1.83212 1.02832 0.97025 1.82574
1.25847 0.99766 0.99144 0.98421 1.22284 1.02713 0.90478 0.99674
1.22580 0.90321 1.03227 0.94908 1.21342 0.94340 0.91947 1.01791
1.19415 0.91714 0.94137 1.04856 1.21923 0.91966 1.01527 0.93548
1.22431 1.00620 0.94512 1.00937 1.23445 0.95121 0.94072 0.93064
1.67776 0.99755 1.40287 1.13136 1.23163 0.99151 0.88056 0.93933
1.72831 1.24719 1.03656 1.08664 1.73564 0.96324 1.28730 1.15198
0.91016 0.80283 0.78519 0.85019 0.81509 0.79238 0.80012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -50.84 13.22 21.64 0.29 -50.55 15
2 C 0.03 1.64 5.49 84.86 0.47 2.10 15
3 Si 0.99 43.94 29.55 68.60 2.03 45.97 15
4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15
5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15
6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15
7 C -0.56 -32.32 9.26 67.95 0.63 -31.69 15
8 H 0.09 5.44 6.55 -2.91 -0.02 5.42 15
9 S 0.10 4.86 21.66 -56.49 -1.22 3.63 15
10 C 0.02 1.00 7.04 84.93 0.60 1.60 15
11 C -0.12 -3.80 9.95 22.64 0.23 -3.58 15
12 C -0.08 -2.19 9.55 22.70 0.22 -1.97 15
13 C 0.06 1.89 6.82 42.10 0.29 2.18 15
14 C -0.10 -2.58 5.89 -19.95 -0.12 -2.70 15
15 C -0.06 -1.56 9.70 22.69 0.22 -1.34 15
16 C -0.17 -2.94 10.10 22.33 0.23 -2.72 15
17 C 0.10 1.69 11.17 84.70 0.95 2.64 15
18 N -0.50 -10.68 10.35 -194.89 -2.02 -12.70 15
19 C 0.12 2.49 10.60 84.98 0.90 3.39 15
20 N -0.26 -10.78 10.69 -48.29 -0.52 -11.29 15
21 N -0.29 -14.03 9.63 -54.10 -0.52 -14.55 15
22 H 0.28 14.67 8.31 -92.71 -0.77 13.90 15
23 H 0.18 4.53 8.06 -2.91 -0.02 4.50 15
24 H 0.20 3.04 6.32 -2.91 -0.02 3.02 15
25 H 0.13 3.61 7.65 -2.91 -0.02 3.59 15
26 H 0.17 1.87 8.06 -2.91 -0.02 1.84 15
27 H 0.19 1.78 8.06 -2.91 -0.02 1.76 15
28 H 0.18 2.75 6.26 -2.91 -0.02 2.73 15
Total: -1.00 -70.92 271.25 3.84 -67.09
By element:
Atomic # 1 Polarization: 3.28 SS G_CDS: 1.20 Total: 4.48 kcal
Atomic # 6 Polarization: -36.69 SS G_CDS: 4.60 Total: -32.09 kcal
Atomic # 7 Polarization: -86.32 SS G_CDS: -2.77 Total: -89.09 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Atomic # 16 Polarization: 4.86 SS G_CDS: -1.22 Total: 3.63 kcal
Total: -70.92 3.84 -67.09 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000005442326.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.790 kcal
(2) G-P(sol) polarization free energy of solvation -70.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds