Wall clock time and date at job start Mon Mar 30 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31590 * 1 3 3 Si 1.86795 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46896 * 240.27122 * 3 2 1 5 5 H 1.48495 * 109.47162 * 0.26971 * 3 2 1 6 6 H 1.48492 * 109.47389 * 120.27148 * 3 2 1 7 7 C 1.38765 * 119.99957 * 180.26759 * 2 1 3 8 8 H 1.07999 * 119.99882 * 179.72963 * 7 2 1 9 9 S 1.76198 * 119.99824 * 359.72969 * 7 2 1 10 10 C 1.76204 * 99.99829 * 179.97438 * 9 7 2 11 11 C 1.39734 * 120.05665 * 180.02562 * 10 9 7 12 12 C 1.38270 * 118.00998 * 179.97438 * 11 10 9 13 13 C 1.39963 * 117.97869 * 359.97438 * 12 11 10 14 14 C 1.48273 * 120.08761 * 179.97438 * 13 12 11 15 15 C 1.39837 * 120.54496 * 180.02562 * 14 13 12 16 16 C 1.38389 * 118.30725 * 179.97438 * 15 14 13 17 17 C 1.38326 * 119.28862 * 359.97438 * 16 15 14 18 18 N 1.31891 * 121.04635 * 0.02566 * 17 16 15 19 19 C 1.31732 * 121.85826 * 359.67645 * 18 17 16 20 20 N 1.32698 * 119.82354 * 0.02562 * 13 12 11 21 21 N 1.28352 * 122.12844 * 359.73104 * 20 13 12 22 22 H 0.97000 * 120.00301 * 359.73329 * 1 2 3 23 23 H 1.08001 * 120.99819 * 359.95146 * 11 10 9 24 24 H 1.07998 * 121.01116 * 180.02562 * 12 11 10 25 25 H 1.08001 * 120.84229 * 359.95860 * 15 14 13 26 26 H 1.07999 * 120.35419 * 180.02562 * 16 15 14 27 27 H 1.07999 * 119.47589 * 180.02562 * 17 16 15 28 28 H 1.08003 * 119.71010 * 180.31652 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.0986 1.6992 -1.2158 5 1 1.2849 2.7464 0.0066 6 1 3.1085 1.6936 1.2091 7 6 2.0097 -1.2017 -0.0056 8 1 3.0897 -1.2017 -0.0100 9 16 1.1287 -2.7276 -0.0055 10 6 2.4785 -3.8602 -0.0144 11 6 2.2372 -5.2366 -0.0174 12 6 3.3274 -6.0870 -0.0250 13 6 4.6054 -5.5161 -0.0297 14 6 5.8073 -6.3844 -0.0373 15 6 7.0886 -5.8243 -0.0416 16 6 8.1778 -6.6779 -0.0481 17 6 7.9664 -8.0449 -0.0496 18 7 6.7457 -8.5443 -0.0454 19 6 5.6785 -7.7721 -0.0334 20 7 4.7384 -4.1959 -0.0264 21 7 3.7254 -3.4077 -0.0240 22 1 -0.4850 0.8400 0.0039 23 1 1.2293 -5.6246 -0.0135 24 1 3.1969 -7.1590 -0.0279 25 1 7.2245 -4.7529 -0.0401 26 1 9.1822 -6.2809 -0.0511 27 1 8.8143 -8.7138 -0.0542 28 1 4.6950 -8.2184 -0.0252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005442326.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:20 Heat of formation + Delta-G solvation = 61.703999 kcal Electronic energy + Delta-G solvation = -15344.273720 eV Core-core repulsion = 12678.704168 eV Total energy + Delta-G solvation = -2665.569552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82467 -40.66511 -34.98309 -34.79622 -34.06714 -32.97500 -31.07386 -27.88100 -26.06495 -25.92661 -23.85797 -23.21835 -20.13372 -18.80367 -18.36799 -17.74570 -17.43548 -16.98575 -16.68941 -16.02381 -15.44579 -15.08447 -14.79191 -14.71335 -14.09340 -13.94590 -13.57437 -13.04432 -13.03155 -12.80444 -12.19408 -12.17286 -11.64186 -11.34440 -11.15642 -11.14059 -10.67664 -10.62692 -10.29668 -9.89082 -8.76444 -8.55715 -6.32312 -0.61657 -0.00527 0.28561 0.60442 1.10298 1.35343 1.38477 1.47844 2.08946 2.51493 2.86294 2.91886 3.01824 3.12197 3.55455 3.60865 3.84844 3.86506 4.00154 4.04142 4.18170 4.28435 4.49739 4.76966 4.80529 5.00261 5.14079 5.28514 5.39004 5.45645 5.71621 6.22271 6.92712 6.95721 7.82485 8.52791 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.004536 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.355915 B = 6171.493659 C = 6895.004418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.565 4.565 8 H 0.092 0.908 9 S 0.096 5.904 10 C 0.022 3.978 11 C -0.117 4.117 12 C -0.081 4.081 13 C 0.058 3.942 14 C -0.097 4.097 15 C -0.062 4.062 16 C -0.166 4.166 17 C 0.100 3.900 18 N -0.501 5.501 19 C 0.116 3.884 20 N -0.256 5.256 21 N -0.290 5.290 22 H 0.280 0.720 23 H 0.180 0.820 24 H 0.198 0.802 25 H 0.132 0.868 26 H 0.167 0.833 27 H 0.191 0.809 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.596 -15.044 -0.050 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.713 4.713 8 H 0.110 0.890 9 S 0.344 5.656 10 C -0.232 4.232 11 C -0.151 4.151 12 C -0.110 4.110 13 C -0.094 4.094 14 C -0.101 4.101 15 C -0.090 4.090 16 C -0.185 4.185 17 C -0.057 4.057 18 N -0.210 5.210 19 C -0.043 4.043 20 N -0.099 5.099 21 N -0.138 5.138 22 H 0.090 0.910 23 H 0.197 0.803 24 H 0.215 0.785 25 H 0.150 0.850 26 H 0.185 0.815 27 H 0.208 0.792 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.921 -14.467 -0.057 17.542 hybrid contribution 0.652 1.360 0.002 1.508 sum 10.573 -13.108 -0.055 16.841 Atomic orbital electron populations 1.70000 1.07260 1.29680 1.46586 1.26000 0.96025 1.02966 0.92683 0.85086 0.78111 0.76076 0.79345 1.19303 1.19059 1.19283 1.23508 0.97109 0.91679 1.58982 0.89006 1.83212 1.02832 0.97025 1.82574 1.25847 0.99766 0.99144 0.98421 1.22284 1.02713 0.90478 0.99674 1.22580 0.90321 1.03227 0.94908 1.21342 0.94340 0.91947 1.01791 1.19415 0.91714 0.94137 1.04856 1.21923 0.91966 1.01527 0.93548 1.22431 1.00620 0.94512 1.00937 1.23445 0.95121 0.94072 0.93064 1.67776 0.99755 1.40287 1.13136 1.23163 0.99151 0.88056 0.93933 1.72831 1.24719 1.03656 1.08664 1.73564 0.96324 1.28730 1.15198 0.91016 0.80283 0.78519 0.85019 0.81509 0.79238 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.84 13.22 21.64 0.29 -50.55 15 2 C 0.03 1.64 5.49 84.86 0.47 2.10 15 3 Si 0.99 43.94 29.55 68.60 2.03 45.97 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.56 -32.32 9.26 67.95 0.63 -31.69 15 8 H 0.09 5.44 6.55 -2.91 -0.02 5.42 15 9 S 0.10 4.86 21.66 -56.49 -1.22 3.63 15 10 C 0.02 1.00 7.04 84.93 0.60 1.60 15 11 C -0.12 -3.80 9.95 22.64 0.23 -3.58 15 12 C -0.08 -2.19 9.55 22.70 0.22 -1.97 15 13 C 0.06 1.89 6.82 42.10 0.29 2.18 15 14 C -0.10 -2.58 5.89 -19.95 -0.12 -2.70 15 15 C -0.06 -1.56 9.70 22.69 0.22 -1.34 15 16 C -0.17 -2.94 10.10 22.33 0.23 -2.72 15 17 C 0.10 1.69 11.17 84.70 0.95 2.64 15 18 N -0.50 -10.68 10.35 -194.89 -2.02 -12.70 15 19 C 0.12 2.49 10.60 84.98 0.90 3.39 15 20 N -0.26 -10.78 10.69 -48.29 -0.52 -11.29 15 21 N -0.29 -14.03 9.63 -54.10 -0.52 -14.55 15 22 H 0.28 14.67 8.31 -92.71 -0.77 13.90 15 23 H 0.18 4.53 8.06 -2.91 -0.02 4.50 15 24 H 0.20 3.04 6.32 -2.91 -0.02 3.02 15 25 H 0.13 3.61 7.65 -2.91 -0.02 3.59 15 26 H 0.17 1.87 8.06 -2.91 -0.02 1.84 15 27 H 0.19 1.78 8.06 -2.91 -0.02 1.76 15 28 H 0.18 2.75 6.26 -2.91 -0.02 2.73 15 Total: -1.00 -70.92 271.25 3.84 -67.09 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.20 Total: 4.48 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.60 Total: -32.09 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -2.77 Total: -89.09 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.22 Total: 3.63 kcal Total: -70.92 3.84 -67.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005442326.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.790 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds