Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47193 * 2 1 4 4 H 1.09006 * 109.46967 * 54.99656 * 3 2 1 5 5 C 1.52994 * 109.47128 * 174.99932 * 3 2 1 6 6 N 1.46501 * 109.46881 * 294.99776 * 3 2 1 7 7 C 1.38664 * 119.99581 * 154.99462 * 6 3 2 8 8 N 1.30248 * 126.09350 * 359.97438 * 7 6 3 9 9 N 1.26109 * 117.70766 * 179.97438 * 8 7 6 10 10 C 1.30218 * 117.72140 * 0.02562 * 9 8 7 11 11 S 1.76204 * 126.08801 * 179.97438 * 10 9 8 12 12 C 1.76198 * 99.99829 * 0.02562 * 11 10 9 13 13 H 1.07999 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.38545 * 119.99701 * 179.97438 * 12 11 10 15 15 N 1.31724 * 119.99810 * 359.72867 * 14 12 11 16 16 Si 1.86795 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47215 * 89.99973 * 16 14 12 18 18 H 1.48509 * 109.47316 * 210.00346 * 16 14 12 19 19 H 1.48502 * 109.47297 * 329.99955 * 16 14 12 20 20 S 1.76479 * 126.08995 * 180.25926 * 7 6 3 21 21 H 1.09002 * 109.47512 * 300.00258 * 1 2 3 22 22 H 1.09003 * 109.47010 * 60.00131 * 1 2 3 23 23 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47569 * 240.00214 * 2 1 3 25 25 H 1.08998 * 109.47057 * 119.99379 * 2 1 3 26 26 H 1.09000 * 109.47486 * 60.00465 * 5 3 2 27 27 H 1.09007 * 109.47018 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.47088 * 299.99693 * 5 3 2 29 29 H 0.96992 * 120.00012 * 334.99963 * 6 3 2 30 30 H 0.97000 * 120.00031 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 7 1.6524 2.0975 -1.2519 7 6 1.5219 3.4771 -1.3010 8 7 1.7134 4.3016 -0.3111 9 7 1.5503 5.5323 -0.5331 10 6 1.2017 5.8898 -1.7357 11 16 0.9155 7.5390 -2.2862 12 6 1.2360 8.4196 -0.7941 13 1 1.5181 7.8830 0.0997 14 6 1.1261 9.8004 -0.7674 15 7 0.7873 10.4553 -1.8590 16 14 1.4666 10.7341 0.8142 17 1 2.9055 11.0957 0.8756 18 1 0.6437 11.9699 0.8465 19 1 1.1210 9.8789 1.9781 20 16 1.0597 4.4279 -2.7140 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8900 26 1 3.9994 0.9054 -0.7161 27 1 3.9280 2.4721 0.1262 28 1 3.8531 0.9571 1.0572 29 1 1.4871 1.5661 -2.0462 30 1 0.7108 11.4221 -1.8404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010757122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = 42.378341 kcal Electronic energy + Delta-G solvation = -14528.236068 eV Core-core repulsion = 11997.272444 eV Total energy + Delta-G solvation = -2530.963624 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82471 -37.52494 -32.95038 -32.72596 -30.01767 -29.02314 -25.72236 -25.07421 -23.70125 -21.62531 -19.58314 -18.97233 -17.57508 -16.94964 -15.67255 -14.98865 -14.90444 -14.73089 -13.99386 -13.74093 -13.52010 -13.02912 -12.67364 -12.46664 -11.88905 -11.65183 -11.29655 -11.23787 -11.16911 -11.07512 -10.77870 -10.56228 -10.27404 -9.62847 -9.45160 -9.41813 -8.99640 -8.80479 -7.97812 -6.64605 -6.52418 -4.22474 1.36501 1.44150 2.01514 2.90732 3.17620 3.21806 3.30763 3.57042 3.59030 3.98964 4.60009 4.88866 4.92192 4.92447 5.03564 5.35520 5.39360 5.47952 5.57294 5.71943 5.76780 5.86868 6.01346 6.08252 6.17161 6.28541 7.18538 7.51495 7.52316 8.32684 8.99348 9.68139 10.54908 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.004883 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.780419 B = 5732.264169 C = 6186.069430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.160 3.840 4 H 0.087 0.913 5 C -0.165 4.165 6 N -0.692 5.692 7 C 0.258 3.742 8 N -0.321 5.321 9 N -0.267 5.267 10 C -0.004 4.004 11 S 0.177 5.823 12 C -0.535 4.535 13 H 0.106 0.894 14 C 0.076 3.924 15 N -0.873 5.873 16 Si 0.933 3.067 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 S -0.007 6.007 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.406 0.594 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -17.008 -0.160 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.105 0.895 5 C -0.224 4.224 6 N -0.335 5.335 7 C -0.121 4.121 8 N -0.165 5.165 9 N -0.109 5.109 10 C -0.392 4.392 11 S 0.412 5.588 12 C -0.685 4.685 13 H 0.124 0.876 14 C -0.134 4.134 15 N -0.508 5.508 16 Si 0.758 3.242 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.190 1.190 20 S 0.227 5.773 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.644 -16.239 -0.859 16.275 hybrid contribution 0.501 -0.132 1.604 1.685 sum 1.145 -16.371 0.744 16.428 Atomic orbital electron populations 1.21768 0.95332 1.01342 1.02562 1.21832 0.96587 0.95608 1.02765 1.20960 0.94567 0.92354 0.86848 0.89477 1.22230 0.95912 1.02884 1.01367 1.43548 1.77284 0.99524 1.13137 1.26387 1.03082 0.91026 0.91602 1.71013 1.23354 0.96653 1.25478 1.71333 1.19282 1.05177 1.15106 1.31949 1.07642 1.05897 0.93707 1.83500 1.76011 0.82873 1.16421 1.23365 1.53597 0.93778 0.97784 0.87574 1.25116 0.93456 0.96434 0.98371 1.69990 1.43830 1.09407 1.27548 0.85908 0.78631 0.78413 0.81246 1.19836 1.20576 1.18962 1.85237 1.73642 1.02522 1.15897 0.92483 0.92470 0.92807 0.91592 0.90424 0.92824 0.91764 0.91953 0.75730 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.80 37.15 0.36 -0.96 16 2 C -0.13 -1.07 5.47 -26.73 -0.15 -1.22 16 3 C 0.16 1.84 2.73 -67.93 -0.19 1.66 16 4 H 0.09 1.21 7.81 -51.93 -0.41 0.80 16 5 C -0.16 -1.84 9.50 37.15 0.35 -1.49 16 6 N -0.69 -9.07 4.68 -54.15 -0.25 -9.32 16 7 C 0.26 4.63 8.47 -87.17 -0.74 3.89 16 8 N -0.32 -6.99 11.02 30.99 0.34 -6.65 16 9 N -0.27 -6.60 10.36 31.30 0.32 -6.28 16 10 C 0.00 -0.10 7.82 52.08 0.41 0.31 16 11 S 0.18 4.47 21.89 -107.50 -2.35 2.12 16 12 C -0.54 -14.96 9.36 30.85 0.29 -14.67 16 13 H 0.11 3.06 6.91 -52.49 -0.36 2.69 16 14 C 0.08 2.06 5.49 -17.48 -0.10 1.97 16 15 N -0.87 -24.24 13.22 55.48 0.73 -23.51 16 16 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 S -0.01 -0.12 23.53 -107.50 -2.53 -2.65 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.41 4.27 8.73 -40.82 -0.36 3.91 16 30 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -30.25 290.73 -7.75 -38.00 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.62 Total: -1.70 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.25 Total: -10.52 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 1.15 Total: -45.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -4.88 Total: -0.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.25 -7.75 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010757122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.380 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds