Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47193 * 2 1 4 4 H 1.09006 * 109.46967 * 54.99656 * 3 2 1 5 5 C 1.52994 * 109.47128 * 174.99932 * 3 2 1 6 6 N 1.46501 * 109.46881 * 294.99776 * 3 2 1 7 7 C 1.38664 * 119.99581 * 154.99462 * 6 3 2 8 8 N 1.30248 * 126.09350 * 359.97438 * 7 6 3 9 9 N 1.26109 * 117.70766 * 179.97438 * 8 7 6 10 10 C 1.30218 * 117.72140 * 0.02562 * 9 8 7 11 11 S 1.76204 * 126.08801 * 179.97438 * 10 9 8 12 12 C 1.76198 * 99.99829 * 0.02562 * 11 10 9 13 13 H 1.07999 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.38545 * 119.99701 * 179.97438 * 12 11 10 15 15 N 1.31724 * 119.99810 * 359.72867 * 14 12 11 16 16 Si 1.86795 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47215 * 89.99973 * 16 14 12 18 18 H 1.48509 * 109.47316 * 210.00346 * 16 14 12 19 19 H 1.48502 * 109.47297 * 329.99955 * 16 14 12 20 20 S 1.76479 * 126.08995 * 180.25926 * 7 6 3 21 21 H 1.09002 * 109.47512 * 300.00258 * 1 2 3 22 22 H 1.09003 * 109.47010 * 60.00131 * 1 2 3 23 23 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47569 * 240.00214 * 2 1 3 25 25 H 1.08998 * 109.47057 * 119.99379 * 2 1 3 26 26 H 1.09000 * 109.47486 * 60.00465 * 5 3 2 27 27 H 1.09007 * 109.47018 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.47088 * 299.99693 * 5 3 2 29 29 H 0.96992 * 120.00012 * 334.99963 * 6 3 2 30 30 H 0.97000 * 120.00031 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 7 1.6524 2.0975 -1.2519 7 6 1.5219 3.4771 -1.3010 8 7 1.7134 4.3016 -0.3111 9 7 1.5503 5.5323 -0.5331 10 6 1.2017 5.8898 -1.7357 11 16 0.9155 7.5390 -2.2862 12 6 1.2360 8.4196 -0.7941 13 1 1.5181 7.8830 0.0997 14 6 1.1261 9.8004 -0.7674 15 7 0.7873 10.4553 -1.8590 16 14 1.4666 10.7341 0.8142 17 1 2.9055 11.0957 0.8756 18 1 0.6437 11.9699 0.8465 19 1 1.1210 9.8789 1.9781 20 16 1.0597 4.4279 -2.7140 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8900 26 1 3.9994 0.9054 -0.7161 27 1 3.9280 2.4721 0.1262 28 1 3.8531 0.9571 1.0572 29 1 1.4871 1.5661 -2.0462 30 1 0.7108 11.4221 -1.8404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010757122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = 22.823492 kcal Electronic energy + Delta-G solvation = -14529.084030 eV Core-core repulsion = 11997.272444 eV Total energy + Delta-G solvation = -2531.811586 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.51920 -38.64446 -34.75607 -34.09692 -31.11292 -30.44072 -27.77205 -26.63909 -24.62254 -22.76370 -21.02320 -20.65626 -19.34365 -18.46147 -16.97977 -16.95252 -16.53255 -16.12717 -15.03091 -14.94102 -14.60069 -14.37213 -14.31127 -13.49074 -13.28301 -13.02890 -12.96584 -12.72645 -12.58730 -12.09465 -11.96877 -11.84024 -11.63323 -11.35238 -11.26394 -11.18256 -10.68864 -10.66044 -9.49821 -8.52823 -8.46831 -6.28534 -0.23530 -0.18955 0.33833 1.14416 1.37758 1.39651 1.53157 1.87887 2.12871 2.27714 2.88137 3.05064 3.76655 4.01120 4.07934 4.21991 4.34679 4.50223 4.67337 4.75812 4.88927 4.98811 5.11686 5.18467 5.31046 5.41740 5.45585 5.83671 6.21027 6.42670 6.94498 7.98702 8.56216 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.004883 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.780419 B = 5732.264169 C = 6186.069430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.153 3.847 4 H 0.063 0.937 5 C -0.160 4.160 6 N -0.665 5.665 7 C 0.279 3.721 8 N -0.360 5.360 9 N -0.288 5.288 10 C -0.037 4.037 11 S 0.132 5.868 12 C -0.559 4.559 13 H 0.087 0.913 14 C 0.033 3.967 15 N -0.902 5.902 16 Si 0.995 3.005 17 H -0.265 1.265 18 H -0.265 1.265 19 H -0.271 1.271 20 S 0.071 5.929 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.424 0.576 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -19.928 -0.132 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.046 3.954 4 H 0.081 0.919 5 C -0.219 4.219 6 N -0.309 5.309 7 C -0.100 4.100 8 N -0.206 5.206 9 N -0.128 5.128 10 C -0.427 4.427 11 S 0.365 5.635 12 C -0.709 4.709 13 H 0.105 0.895 14 C -0.174 4.174 15 N -0.538 5.538 16 Si 0.817 3.183 17 H -0.190 1.190 18 H -0.189 1.189 19 H -0.195 1.195 20 S 0.305 5.695 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.264 0.736 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.011 -19.270 -0.839 19.315 hybrid contribution 0.418 0.317 1.579 1.664 sum 1.429 -18.953 0.740 19.021 Atomic orbital electron populations 1.21790 0.95696 1.02305 1.01420 1.21798 0.96090 0.92904 1.04843 1.21213 0.95107 0.94096 0.84945 0.91921 1.22183 0.95125 1.01147 1.03446 1.43922 1.74586 0.97551 1.14865 1.26810 0.99334 0.92700 0.91158 1.71008 1.26752 0.96120 1.26754 1.71322 1.18136 1.06983 1.16386 1.31706 1.09276 1.06738 0.95005 1.83223 1.79274 0.84720 1.16280 1.23394 1.54769 0.94664 0.98064 0.89520 1.25948 0.93021 0.96931 1.01507 1.70052 1.44686 1.09873 1.29178 0.84996 0.78956 0.77342 0.77041 1.19006 1.18900 1.19549 1.84871 1.72261 0.98802 1.13537 0.93933 0.93346 0.90863 0.89323 0.88482 0.90950 0.95310 0.89798 0.73576 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.80 71.98 0.71 -1.49 16 2 C -0.12 -1.46 5.47 30.59 0.17 -1.29 16 3 C 0.15 3.11 2.73 44.99 0.12 3.23 16 4 H 0.06 1.65 7.81 -2.38 -0.02 1.63 16 5 C -0.16 -3.15 9.50 71.98 0.68 -2.46 16 6 N -0.67 -15.51 4.68 -325.23 -1.52 -17.04 16 7 C 0.28 9.56 8.47 179.14 1.52 11.08 16 8 N -0.36 -15.71 11.02 -55.87 -0.62 -16.33 16 9 N -0.29 -14.54 10.36 -54.89 -0.57 -15.11 16 10 C -0.04 -1.77 7.82 130.48 1.02 -0.75 16 11 S 0.13 6.97 21.89 -56.49 -1.24 5.74 16 12 C -0.56 -32.62 9.36 67.89 0.64 -31.99 16 13 H 0.09 5.25 6.91 -2.91 -0.02 5.23 16 14 C 0.03 1.81 5.49 84.78 0.47 2.28 16 15 N -0.90 -51.35 13.22 21.61 0.29 -51.07 16 16 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 S 0.07 2.50 23.53 -56.49 -1.33 1.17 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.42 7.12 8.73 -92.71 -0.81 6.31 16 30 H 0.28 14.74 8.32 -92.71 -0.77 13.96 16 Total: -1.00 -68.60 290.73 2.70 -65.89 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.35 Total: 1.90 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 5.32 Total: -21.39 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -2.42 Total: -99.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 9.47 SS G_CDS: -2.57 Total: 6.90 kcal Total: -68.60 2.70 -65.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010757122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.715 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds