Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 H 1.09002 * 109.46716 * 304.99789 * 3 2 1 5 5 C 1.52997 * 109.47317 * 184.99880 * 3 2 1 6 6 N 1.46500 * 109.46944 * 64.99440 * 3 2 1 7 7 C 1.38663 * 119.99487 * 205.00340 * 6 3 2 8 8 N 1.30248 * 126.10072 * 359.68933 * 7 6 3 9 9 N 1.26098 * 117.71233 * 179.80137 * 8 7 6 10 10 C 1.30221 * 117.72412 * 0.51164 * 9 8 7 11 11 S 1.76193 * 126.09161 * 179.75176 * 10 9 8 12 12 C 1.76204 * 100.00125 * 359.97438 * 11 10 9 13 13 H 1.08004 * 119.99879 * 0.02562 * 12 11 10 14 14 C 1.38537 * 120.00169 * 179.97438 * 12 11 10 15 15 N 1.31733 * 120.00047 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00235 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46848 * 90.00251 * 16 14 12 18 18 H 1.48497 * 109.47294 * 210.00339 * 16 14 12 19 19 H 1.48502 * 109.47107 * 330.00488 * 16 14 12 20 20 S 1.76476 * 107.81579 * 359.73063 * 10 9 8 21 21 H 1.09000 * 109.46961 * 60.00367 * 1 2 3 22 22 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47443 * 300.00108 * 1 2 3 24 24 H 1.08998 * 109.47348 * 239.99118 * 2 1 3 25 25 H 1.09000 * 109.46961 * 119.99633 * 2 1 3 26 26 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 27 27 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 28 28 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 29 29 H 0.96994 * 119.99975 * 25.00733 * 6 3 2 30 30 H 0.96992 * 119.99778 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 1.5219 3.4771 1.3007 8 7 1.7196 4.3022 0.3125 9 7 1.5514 5.5323 0.5331 10 6 1.2020 5.8899 1.7355 11 16 0.9156 7.5390 2.2858 12 6 1.2371 8.4197 0.7939 13 1 1.5197 7.8830 -0.0998 14 6 1.1263 9.8004 0.7669 15 7 0.7812 10.4549 1.8567 16 14 1.4678 10.7340 -0.8146 17 1 0.2099 10.8663 -1.5927 18 1 1.9926 12.0844 -0.4887 19 1 2.4723 9.9936 -1.6195 20 16 1.0659 4.4286 2.7154 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.9995 0.9053 0.7162 27 1 3.9281 2.4719 -0.1261 28 1 3.8533 0.9569 -1.0571 29 1 1.4871 1.5661 2.0462 30 1 0.7040 11.4216 1.8379 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010757129.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = 22.836247 kcal Electronic energy + Delta-G solvation = -14529.102363 eV Core-core repulsion = 11997.291330 eV Total energy + Delta-G solvation = -2531.811033 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52067 -38.64489 -34.75497 -34.09677 -31.11210 -30.44132 -27.77242 -26.64042 -24.62252 -22.76356 -21.02380 -20.65631 -19.34347 -18.46278 -16.97947 -16.95086 -16.53363 -16.12807 -15.03088 -14.94061 -14.60118 -14.37189 -14.31116 -13.49018 -13.28388 -13.02271 -12.97044 -12.72635 -12.58697 -12.09459 -11.97077 -11.83846 -11.63315 -11.35487 -11.25985 -11.18381 -10.68923 -10.65967 -9.49817 -8.52803 -8.46797 -6.28555 -0.23551 -0.18972 0.33871 1.14424 1.37759 1.39666 1.53186 1.87924 2.12863 2.27708 2.88128 3.05056 3.76685 4.01110 4.07921 4.22022 4.34668 4.50231 4.67350 4.75843 4.88901 4.98812 5.11727 5.18480 5.31069 5.41786 5.45600 5.83687 6.21028 6.42663 6.94519 7.98776 8.56236 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.034735 B = 0.004883 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.918472 B = 5732.350110 C = 6185.956880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.153 3.847 4 H 0.063 0.937 5 C -0.160 4.160 6 N -0.665 5.665 7 C 0.278 3.722 8 N -0.360 5.360 9 N -0.288 5.288 10 C -0.037 4.037 11 S 0.132 5.868 12 C -0.559 4.559 13 H 0.087 0.913 14 C 0.033 3.967 15 N -0.902 5.902 16 Si 0.995 3.005 17 H -0.265 1.265 18 H -0.265 1.265 19 H -0.271 1.271 20 S 0.071 5.929 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.424 0.576 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 -19.931 0.124 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.046 3.954 4 H 0.081 0.919 5 C -0.219 4.219 6 N -0.309 5.309 7 C -0.100 4.100 8 N -0.206 5.206 9 N -0.128 5.128 10 C -0.427 4.427 11 S 0.365 5.635 12 C -0.709 4.709 13 H 0.105 0.895 14 C -0.174 4.174 15 N -0.538 5.538 16 Si 0.817 3.183 17 H -0.190 1.190 18 H -0.189 1.189 19 H -0.196 1.196 20 S 0.305 5.695 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.264 0.736 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.997 -19.272 0.835 19.316 hybrid contribution 0.405 0.315 -1.583 1.664 sum 1.401 -18.956 -0.748 19.023 Atomic orbital electron populations 1.21790 0.95690 1.02305 1.01423 1.21798 0.96095 0.92903 1.04843 1.21210 0.95100 0.94096 0.84948 0.91920 1.22183 0.95134 1.01145 1.03444 1.43921 1.74582 0.97551 1.14868 1.26810 0.99324 0.92692 0.91179 1.71003 1.26639 0.96120 1.26866 1.71320 1.18079 1.07001 1.16429 1.31704 1.09327 1.06747 0.94954 1.83222 1.79271 0.84715 1.16285 1.23394 1.54722 0.94663 0.98098 0.89520 1.25949 0.93038 0.96933 1.01491 1.70054 1.44619 1.09903 1.29222 0.84996 0.79065 0.77240 0.77033 1.18987 1.18911 1.19553 1.84870 1.72512 0.98801 1.13288 0.93928 0.90865 0.93342 0.88482 0.89328 0.90954 0.95312 0.89798 0.73575 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.80 71.98 0.71 -1.48 16 2 C -0.12 -1.46 5.47 30.59 0.17 -1.29 16 3 C 0.15 3.11 2.73 44.99 0.12 3.23 16 4 H 0.06 1.65 7.82 -2.39 -0.02 1.63 16 5 C -0.16 -3.15 9.50 71.98 0.68 -2.47 16 6 N -0.67 -15.51 4.68 -325.25 -1.52 -17.04 16 7 C 0.28 9.56 8.47 179.14 1.52 11.08 16 8 N -0.36 -15.71 11.02 -55.88 -0.62 -16.32 16 9 N -0.29 -14.54 10.36 -54.90 -0.57 -15.11 16 10 C -0.04 -1.77 7.82 130.48 1.02 -0.75 16 11 S 0.13 6.97 21.89 -56.49 -1.24 5.74 16 12 C -0.56 -32.61 9.36 67.89 0.64 -31.98 16 13 H 0.09 5.25 6.91 -2.91 -0.02 5.23 16 14 C 0.03 1.81 5.49 84.78 0.47 2.28 16 15 N -0.90 -51.36 13.22 21.60 0.29 -51.07 16 16 Si 1.00 44.21 29.55 68.60 2.03 46.23 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 S 0.07 2.50 23.53 -56.49 -1.33 1.17 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 24 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.42 7.11 8.73 -92.71 -0.81 6.31 16 30 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -68.59 290.73 2.70 -65.89 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.35 Total: 1.90 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 5.32 Total: -21.39 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -2.42 Total: -99.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 9.47 SS G_CDS: -2.57 Total: 6.90 kcal Total: -68.59 2.70 -65.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010757129.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.727 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds