Wall clock time and date at job start Mon Mar 30 2020 07:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38386 * 119.93086 * 2 1 4 4 C 1.38331 * 120.26201 * 180.27941 * 3 2 1 5 5 C 1.37998 * 120.13459 * 359.44798 * 4 3 2 6 6 C 1.50702 * 120.06542 * 180.25287 * 5 4 3 7 7 C 1.39447 * 119.86722 * 0.27134 * 5 4 3 8 8 C 1.48211 * 120.13299 * 179.97438 * 7 5 4 9 9 C 1.37230 * 122.47133 * 227.06928 * 8 7 5 10 10 S 1.71002 * 109.07702 * 179.89718 * 9 8 7 11 11 C 1.75979 * 90.63703 * 0.29818 * 10 9 8 12 12 C 1.39870 * 125.29985 * 179.79824 * 11 10 9 13 13 H 1.08001 * 120.00377 * 180.02562 * 12 11 10 14 14 C 1.40184 * 119.99681 * 0.02956 * 12 11 10 15 15 N 1.30731 * 119.99814 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00139 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47627 * 89.99319 * 16 14 12 18 18 H 1.48503 * 109.47422 * 209.99805 * 16 14 12 19 19 H 1.48507 * 109.47271 * 329.99511 * 16 14 12 20 20 N 1.31237 * 122.47252 * 47.35392 * 8 7 5 21 21 C 1.37959 * 119.93899 * 179.72642 * 2 1 3 22 22 H 1.09004 * 109.47184 * 270.27234 * 1 2 3 23 23 H 1.09000 * 109.47593 * 30.27452 * 1 2 3 24 24 H 1.09001 * 109.47294 * 150.27759 * 1 2 3 25 25 H 1.07998 * 119.86525 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.93392 * 179.72042 * 4 3 2 27 27 H 1.09008 * 109.47186 * 95.39656 * 6 5 4 28 28 H 1.08997 * 109.47228 * 215.38962 * 6 5 4 29 29 H 1.08994 * 109.47681 * 335.39201 * 6 5 4 30 30 H 1.08000 * 125.45622 * 359.97438 * 9 8 7 31 31 H 0.97004 * 120.00045 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.06032 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2073 -0.0058 5 6 4.2804 0.0179 -0.0002 6 6 5.7874 0.0285 -0.0008 7 6 3.5902 -1.1938 0.0057 8 6 4.3358 -2.4747 0.0112 9 6 4.0245 -3.5120 -0.8316 10 16 5.0965 -4.8116 -0.5381 11 6 5.9068 -3.8849 0.7195 12 6 6.9862 -4.3350 1.4867 13 1 7.4194 -3.6924 2.2389 14 6 7.5059 -5.6204 1.2791 15 7 6.9813 -6.3984 0.3689 16 14 8.9470 -6.2219 2.3041 17 1 8.4385 -6.8947 3.5264 18 1 9.7530 -7.1829 1.5090 19 1 9.7953 -5.0663 2.6918 20 7 5.3389 -2.7026 0.8262 21 6 2.1954 -1.1955 0.0057 22 1 -0.3634 0.0049 1.0277 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8925 -0.5095 25 1 1.6541 2.1327 0.0004 26 1 4.1142 2.1463 -0.0104 27 1 6.1518 -0.0606 1.0227 28 1 6.1564 -0.8097 -0.5919 29 1 6.1441 0.9631 -0.4334 30 1 3.2306 -3.5077 -1.5638 31 1 7.3406 -7.2879 0.2255 32 1 1.6554 -2.1308 0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019437368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:21 Heat of formation + Delta-G solvation = 25.656946 kcal Electronic energy + Delta-G solvation = -16161.297436 eV Core-core repulsion = 13597.705111 eV Total energy + Delta-G solvation = -2563.592326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19348 -37.14657 -34.19324 -33.26883 -31.06496 -28.89369 -28.45450 -26.17200 -24.47840 -23.44724 -21.39361 -20.41572 -18.04925 -17.71097 -15.75150 -15.27754 -15.23137 -14.88262 -14.32413 -13.71033 -13.47817 -12.87299 -12.79025 -12.51660 -12.33791 -12.22762 -12.12838 -11.78952 -11.43684 -11.36330 -11.05369 -10.76401 -10.60972 -10.53254 -10.41765 -9.68670 -9.48081 -8.43372 -8.01613 -7.85536 -7.75814 -7.10310 -6.99138 -4.75439 1.71627 1.86067 2.53335 2.92156 2.97553 3.02828 3.49818 3.67332 3.96292 4.01285 4.37245 5.07729 5.17740 5.26720 5.42128 5.49767 5.61783 5.76307 5.87494 5.96182 6.00290 6.21051 6.39081 6.44298 6.53869 6.67683 6.80338 6.85790 6.87474 6.96812 7.10543 7.32404 7.49829 7.58401 7.87939 8.29947 8.38871 9.70452 9.80135 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.005377 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.059991 B = 5206.450106 C = 5680.243367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.067 4.067 6 C -0.098 4.098 7 C 0.014 3.986 8 C 0.136 3.864 9 C -0.451 4.451 10 S 0.116 5.884 11 C 0.202 3.798 12 C -0.374 4.374 13 H 0.103 0.897 14 C 0.055 3.945 15 N -0.782 5.782 16 Si 0.941 3.059 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.257 1.257 20 N -0.583 5.583 21 C -0.106 4.106 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.129 0.871 31 H 0.298 0.702 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 5.938 -0.700 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.068 4.068 6 C -0.155 4.155 7 C 0.011 3.989 8 C -0.004 4.004 9 C -0.596 4.596 10 S 0.376 5.624 11 C -0.051 4.051 12 C -0.417 4.417 13 H 0.121 0.879 14 C -0.167 4.167 15 N -0.411 5.411 16 Si 0.764 3.236 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.181 1.181 20 N -0.304 5.304 21 C -0.125 4.125 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.711 5.008 -0.885 6.295 hybrid contribution -0.092 0.458 0.244 0.527 sum -3.803 5.466 -0.641 6.689 Atomic orbital electron populations 1.20710 0.91739 1.02155 1.01811 1.19695 0.95542 0.93094 1.01904 1.20867 0.94082 0.96891 1.03125 1.20867 0.93955 0.97130 1.02325 1.20022 0.96487 0.91909 0.98428 1.20645 0.90840 1.00928 1.03064 1.18394 0.91972 0.91366 0.97140 1.18653 0.94651 0.92360 0.94704 1.26387 1.14839 1.03613 1.14732 1.84200 1.25196 1.16202 1.36757 1.23862 0.96676 0.89656 0.94947 1.18968 1.09305 0.98239 1.15195 0.87928 1.26163 0.99088 0.96042 0.95414 1.68781 1.36916 1.09210 1.26170 0.85720 0.79139 0.79283 0.79416 1.18951 1.19749 1.18052 1.67405 1.14289 1.19186 1.29535 1.21047 0.93186 0.97294 1.00970 0.91687 0.92055 0.91887 0.86864 0.86594 0.90654 0.91186 0.93421 0.85263 0.88883 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.00 0.36 -0.95 16 2 C -0.10 -1.64 5.87 -104.67 -0.61 -2.26 16 3 C -0.13 -2.01 9.70 -39.49 -0.38 -2.39 16 4 C -0.12 -2.06 9.67 -39.64 -0.38 -2.44 16 5 C -0.07 -1.33 5.91 -104.26 -0.62 -1.94 16 6 C -0.10 -1.88 8.83 36.01 0.32 -1.56 16 7 C 0.01 0.30 5.72 -104.89 -0.60 -0.30 16 8 C 0.14 3.40 5.36 -84.39 -0.45 2.95 16 9 C -0.45 -11.17 10.72 30.37 0.33 -10.84 16 10 S 0.12 2.96 20.12 -107.50 -2.16 0.80 16 11 C 0.20 5.47 7.11 -17.04 -0.12 5.35 16 12 C -0.37 -9.59 9.44 -38.24 -0.36 -9.95 16 13 H 0.10 2.54 7.85 -52.49 -0.41 2.13 16 14 C 0.06 1.28 5.50 -17.29 -0.10 1.18 16 15 N -0.78 -18.58 10.64 55.56 0.59 -17.99 16 16 Si 0.94 17.30 29.56 -169.99 -5.03 12.28 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 N -0.58 -15.59 9.29 -9.50 -0.09 -15.68 16 21 C -0.11 -2.02 9.21 -39.22 -0.36 -2.38 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 28 H 0.07 1.52 7.00 -51.93 -0.36 1.16 16 29 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 30 H 0.13 2.97 8.06 -52.49 -0.42 2.54 16 31 H 0.30 6.33 8.29 -40.82 -0.34 5.99 16 32 H 0.12 2.20 8.04 -52.48 -0.42 1.78 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -27.92 289.83 -9.00 -36.92 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.70 Total: 4.82 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -2.98 Total: -25.52 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.50 Total: -33.66 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.16 Total: 0.80 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.92 -9.00 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019437368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.577 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds