Wall clock time and date at job start Mon Mar 30 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70999 * 125.46451 * 2 1 4 4 C 1.75976 * 90.63446 * 180.02562 * 3 2 1 5 5 C 1.39877 * 125.29679 * 179.91487 * 4 3 2 6 6 H 1.08002 * 120.00520 * 179.70027 * 5 4 3 7 7 C 1.40181 * 119.99491 * 359.41864 * 5 4 3 8 8 N 1.30724 * 120.00338 * 0.27850 * 7 5 4 9 9 Si 1.86803 * 119.99755 * 180.27670 * 7 5 4 10 10 H 1.48496 * 109.47491 * 60.00043 * 9 7 5 11 11 H 1.48498 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00149 * 9 7 5 13 13 N 1.31585 * 109.41304 * 359.65478 * 4 3 2 14 14 C 1.31244 * 115.81798 * 0.26141 * 13 4 3 15 15 C 1.48204 * 122.47192 * 179.97438 * 14 13 4 16 16 C 1.39470 * 120.13429 * 144.74948 * 15 14 13 17 17 C 1.37976 * 119.86724 * 179.74618 * 16 15 14 18 18 C 1.38360 * 120.13276 * 0.53116 * 17 16 15 19 19 C 1.50696 * 119.86396 * 179.76610 * 18 17 16 20 20 C 1.38354 * 120.26618 * 359.73948 * 18 17 16 21 21 C 1.37979 * 120.13151 * 359.97438 * 20 18 17 22 22 H 1.08996 * 109.47548 * 270.32075 * 1 2 3 23 23 H 1.09003 * 109.46664 * 30.32097 * 1 2 3 24 24 H 1.08997 * 109.47626 * 150.31324 * 1 2 3 25 25 H 0.97005 * 120.00059 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.06188 * 359.97438 * 16 15 14 27 27 H 1.08004 * 119.93012 * 180.26994 * 17 16 15 28 28 H 1.08999 * 109.47085 * 269.96918 * 19 18 17 29 29 H 1.08994 * 109.47718 * 29.97823 * 19 18 17 30 30 H 1.09004 * 109.46796 * 149.97541 * 19 18 17 31 31 H 1.08002 * 119.93502 * 180.02562 * 20 18 17 32 32 H 1.08002 * 120.06385 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3927 0.0000 4 6 3.9436 0.3877 -0.0008 5 6 5.2591 0.8632 -0.0028 6 1 6.0850 0.1672 0.0017 7 6 5.5054 2.2431 -0.0168 8 7 4.5059 3.0855 -0.0224 9 14 7.2622 2.8781 -0.0273 10 1 7.9627 2.3764 -1.2368 11 1 7.2518 4.3630 -0.0410 12 1 7.9687 2.3997 1.1881 13 7 3.5938 -0.8808 0.0065 14 6 2.3030 -1.1178 0.0071 15 6 1.7461 -2.4912 0.0143 16 6 0.5698 -2.7662 0.7114 17 6 0.0534 -4.0456 0.7101 18 6 0.7060 -5.0573 0.0282 19 6 0.1394 -6.4537 0.0352 20 6 1.8762 -4.7920 -0.6605 21 6 2.3992 -3.5152 -0.6714 22 1 -0.3634 0.0058 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3634 -0.8927 -0.5089 25 1 4.6764 4.0404 -0.0316 26 1 0.0622 -1.9783 1.2481 27 1 -0.8598 -4.2587 1.2460 28 1 0.5484 -7.0075 0.8802 29 1 -0.9459 -6.4051 0.1235 30 1 0.4060 -6.9586 -0.8934 31 1 2.3810 -5.5856 -1.1913 32 1 3.3126 -3.3091 -1.2096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019507704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:24 Heat of formation + Delta-G solvation = 25.244622 kcal Electronic energy + Delta-G solvation = -16064.294283 eV Core-core repulsion = 13500.684077 eV Total energy + Delta-G solvation = -2563.610206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.05591 -37.22557 -34.30748 -32.54605 -31.11414 -30.13282 -28.23096 -26.68667 -23.97137 -22.32573 -21.81546 -20.81469 -18.55399 -17.29721 -15.93759 -15.29321 -14.99392 -14.76242 -14.44254 -13.65128 -13.41988 -13.22078 -12.87977 -12.60204 -12.19094 -12.06171 -11.92793 -11.81961 -11.62324 -11.47639 -11.24225 -10.90850 -10.62427 -10.45634 -10.38768 -9.66080 -9.32346 -8.44191 -8.31509 -7.77418 -7.67348 -7.09473 -6.93878 -4.73185 1.63936 1.91156 2.53308 2.91507 2.95840 3.02930 3.43976 3.66608 3.93738 3.97429 4.44329 5.11458 5.16946 5.23104 5.40739 5.55511 5.65475 5.70926 5.93842 5.97364 6.14309 6.22525 6.30842 6.37488 6.47558 6.55892 6.71835 6.80612 6.82231 6.99331 7.05650 7.34959 7.53696 7.57226 7.87227 8.29118 8.37790 9.69839 9.79493 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.005243 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.986483 B = 5338.839583 C = 6008.273164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.420 4.420 3 S 0.125 5.875 4 C 0.203 3.797 5 C -0.375 4.375 6 H 0.103 0.897 7 C 0.055 3.945 8 N -0.782 5.782 9 Si 0.943 3.057 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.260 1.260 13 N -0.588 5.588 14 C 0.132 3.868 15 C 0.010 3.990 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.107 4.107 19 C -0.107 4.107 20 C -0.126 4.126 21 C -0.093 4.093 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.299 0.701 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -6.260 -0.033 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.545 4.545 3 S 0.386 5.614 4 C -0.051 4.051 5 C -0.417 4.417 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.411 5.411 9 Si 0.766 3.234 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.184 1.184 13 N -0.309 5.309 14 C -0.008 4.008 15 C 0.007 3.993 16 C -0.129 4.129 17 C -0.144 4.144 18 C -0.108 4.108 19 C -0.164 4.164 20 C -0.144 4.144 21 C -0.112 4.112 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.142 0.858 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.436 -5.256 -0.033 6.878 hybrid contribution 0.324 -0.475 0.007 0.575 sum -4.112 -5.730 -0.026 7.053 Atomic orbital electron populations 1.19791 0.90432 1.00255 0.99371 1.25390 1.00266 1.00139 1.28741 1.84184 0.97776 1.06807 1.72661 1.23747 0.96742 0.88605 0.96021 1.18947 0.91260 0.91892 1.39639 0.87946 1.26164 1.01300 0.96446 0.92777 1.68747 1.33341 1.05329 1.33717 0.85750 0.79512 0.77777 0.80387 1.18440 1.19858 1.18442 1.67335 1.13907 1.17709 1.31939 1.18636 0.88929 0.91048 1.02154 1.18471 0.93522 0.91676 0.95599 1.21331 0.95925 0.96452 0.99228 1.20823 1.00111 0.92763 1.00740 1.19819 0.96144 0.95523 0.99288 1.20712 1.00432 0.93406 1.01858 1.20889 0.96194 0.96607 1.00738 1.21283 0.99412 0.91882 0.98648 0.93922 0.93779 0.92991 0.88787 0.85781 0.86692 0.91767 0.92068 0.92046 0.86687 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.78 8.57 36.01 0.31 -0.48 16 2 C -0.42 -10.16 6.38 -34.68 -0.22 -10.38 16 3 S 0.12 3.18 20.09 -107.50 -2.16 1.02 16 4 C 0.20 5.56 7.11 -17.04 -0.12 5.44 16 5 C -0.37 -9.72 9.44 -38.24 -0.36 -10.08 16 6 H 0.10 2.56 7.85 -52.49 -0.41 2.15 16 7 C 0.06 1.29 5.50 -17.29 -0.10 1.20 16 8 N -0.78 -18.66 10.64 55.56 0.59 -18.07 16 9 Si 0.94 17.41 29.56 -169.99 -5.03 12.39 16 10 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 11 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 12 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 13 N -0.59 -16.12 10.50 -9.50 -0.10 -16.22 16 14 C 0.13 3.31 6.38 -84.39 -0.54 2.78 16 15 C 0.01 0.21 5.59 -104.88 -0.59 -0.37 16 16 C -0.11 -2.05 8.06 -39.22 -0.32 -2.37 16 17 C -0.13 -1.99 9.68 -39.63 -0.38 -2.37 16 18 C -0.11 -1.61 5.89 -104.54 -0.62 -2.23 16 19 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 20 C -0.13 -2.06 9.68 -39.63 -0.38 -2.45 16 21 C -0.09 -1.85 9.65 -39.22 -0.38 -2.22 16 22 H 0.04 0.77 7.58 -51.93 -0.39 0.38 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.97 6.61 -51.93 -0.34 0.62 16 25 H 0.30 6.39 8.29 -40.82 -0.34 6.05 16 26 H 0.12 2.23 5.91 -52.48 -0.31 1.92 16 27 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.12 2.55 8.04 -52.49 -0.42 2.13 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -28.41 286.91 -9.25 -37.66 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.55 Total: 3.27 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -3.33 Total: -24.36 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.49 Total: -34.29 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.16 Total: 1.02 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.41 -9.25 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019507704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.901 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds