Wall clock time and date at job start Mon Mar 30 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70999 * 125.46451 * 2 1 4 4 C 1.75976 * 90.63446 * 180.02562 * 3 2 1 5 5 C 1.39877 * 125.29679 * 179.91487 * 4 3 2 6 6 H 1.08002 * 120.00520 * 179.70027 * 5 4 3 7 7 C 1.40181 * 119.99491 * 359.41864 * 5 4 3 8 8 N 1.30724 * 120.00338 * 0.27850 * 7 5 4 9 9 Si 1.86803 * 119.99755 * 180.27670 * 7 5 4 10 10 H 1.48496 * 109.47491 * 60.00043 * 9 7 5 11 11 H 1.48498 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00149 * 9 7 5 13 13 N 1.31585 * 109.41304 * 359.65478 * 4 3 2 14 14 C 1.31244 * 115.81798 * 0.26141 * 13 4 3 15 15 C 1.48204 * 122.47192 * 179.97438 * 14 13 4 16 16 C 1.39470 * 120.13429 * 144.74948 * 15 14 13 17 17 C 1.37976 * 119.86724 * 179.74618 * 16 15 14 18 18 C 1.38360 * 120.13276 * 0.53116 * 17 16 15 19 19 C 1.50696 * 119.86396 * 179.76610 * 18 17 16 20 20 C 1.38354 * 120.26618 * 359.73948 * 18 17 16 21 21 C 1.37979 * 120.13151 * 359.97438 * 20 18 17 22 22 H 1.08996 * 109.47548 * 270.32075 * 1 2 3 23 23 H 1.09003 * 109.46664 * 30.32097 * 1 2 3 24 24 H 1.08997 * 109.47626 * 150.31324 * 1 2 3 25 25 H 0.97005 * 120.00059 * 179.97438 * 8 7 5 26 26 H 1.08004 * 120.06188 * 359.97438 * 16 15 14 27 27 H 1.08004 * 119.93012 * 180.26994 * 17 16 15 28 28 H 1.08999 * 109.47085 * 269.96918 * 19 18 17 29 29 H 1.08994 * 109.47718 * 29.97823 * 19 18 17 30 30 H 1.09004 * 109.46796 * 149.97541 * 19 18 17 31 31 H 1.08002 * 119.93502 * 180.02562 * 20 18 17 32 32 H 1.08002 * 120.06385 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3927 0.0000 4 6 3.9436 0.3877 -0.0008 5 6 5.2591 0.8632 -0.0028 6 1 6.0850 0.1672 0.0017 7 6 5.5054 2.2431 -0.0168 8 7 4.5059 3.0855 -0.0224 9 14 7.2622 2.8781 -0.0273 10 1 7.9627 2.3764 -1.2368 11 1 7.2518 4.3630 -0.0410 12 1 7.9687 2.3997 1.1881 13 7 3.5938 -0.8808 0.0065 14 6 2.3030 -1.1178 0.0071 15 6 1.7461 -2.4912 0.0143 16 6 0.5698 -2.7662 0.7114 17 6 0.0534 -4.0456 0.7101 18 6 0.7060 -5.0573 0.0282 19 6 0.1394 -6.4537 0.0352 20 6 1.8762 -4.7920 -0.6605 21 6 2.3992 -3.5152 -0.6714 22 1 -0.3634 0.0058 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3634 -0.8927 -0.5089 25 1 4.6764 4.0404 -0.0316 26 1 0.0622 -1.9783 1.2481 27 1 -0.8598 -4.2587 1.2460 28 1 0.5484 -7.0075 0.8802 29 1 -0.9459 -6.4051 0.1235 30 1 0.4060 -6.9586 -0.8934 31 1 2.3810 -5.5856 -1.1913 32 1 3.3126 -3.3091 -1.2096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019507704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:23 Heat of formation + Delta-G solvation = 10.072514 kcal Electronic energy + Delta-G solvation = -16064.952195 eV Core-core repulsion = 13500.684077 eV Total energy + Delta-G solvation = -2564.268118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55370 -38.94340 -36.13105 -34.02082 -32.60453 -31.57663 -30.00958 -28.04901 -25.63009 -24.00086 -23.29558 -22.28813 -20.24096 -19.22930 -17.71657 -16.84047 -16.66226 -16.12109 -15.86367 -15.19239 -14.90918 -14.47320 -14.29006 -14.07990 -13.96221 -13.58933 -13.55977 -13.21179 -13.01610 -12.88032 -12.68551 -12.38095 -12.20225 -12.03859 -11.81107 -11.35880 -11.12886 -9.87021 -9.80663 -9.74896 -9.59722 -8.89360 -8.73593 -6.68086 0.14949 0.54426 0.76960 1.37904 1.49141 1.51697 1.54238 1.98474 2.17618 2.25625 2.90335 3.24688 3.88932 4.01414 4.10774 4.18247 4.50889 4.57773 4.63871 4.68446 4.83225 4.85746 4.91796 4.94268 4.95817 5.11414 5.16925 5.26096 5.38019 5.50722 5.71385 5.73816 5.82631 5.95963 6.17107 6.39153 6.45104 7.77961 8.01205 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.005243 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.986483 B = 5338.839583 C = 6008.273164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.433 4.433 3 S 0.105 5.895 4 C 0.168 3.832 5 C -0.405 4.405 6 H 0.099 0.901 7 C 0.021 3.979 8 N -0.800 5.800 9 Si 1.019 2.981 10 H -0.256 1.256 11 H -0.255 1.255 12 H -0.256 1.256 13 N -0.622 5.622 14 C 0.114 3.886 15 C -0.032 4.032 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.113 4.113 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.312 0.688 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -7.592 0.284 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.558 4.558 3 S 0.364 5.636 4 C -0.085 4.085 5 C -0.447 4.447 6 H 0.117 0.883 7 C -0.199 4.199 8 N -0.429 5.429 9 Si 0.837 3.163 10 H -0.180 1.180 11 H -0.179 1.179 12 H -0.180 1.180 13 N -0.345 5.345 14 C -0.024 4.024 15 C -0.034 4.034 16 C -0.134 4.134 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.162 4.162 20 C -0.143 4.143 21 C -0.133 4.133 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.391 -6.602 0.283 8.529 hybrid contribution 0.547 -0.164 -0.089 0.578 sum -4.844 -6.766 0.194 8.324 Atomic orbital electron populations 1.19817 0.87466 1.01115 1.00673 1.25830 1.02293 0.99093 1.28632 1.83897 0.97884 1.07891 1.73887 1.24228 0.98028 0.89247 0.96970 1.19299 0.90836 0.93556 1.41044 0.88308 1.27183 1.05993 0.95437 0.91265 1.68785 1.35512 1.06254 1.32354 0.84662 0.73354 0.77904 0.80417 1.18034 1.17895 1.18042 1.67372 1.15596 1.17974 1.33542 1.19238 0.88448 0.93331 1.01382 1.18556 0.95643 0.90488 0.98743 1.21418 0.94934 0.98097 0.98908 1.21245 1.01028 0.91420 1.00194 1.20361 0.94803 0.97585 0.96742 1.20807 1.01563 0.90508 1.03323 1.21187 0.96787 0.95566 1.00739 1.21234 0.99153 0.93443 0.99430 0.92240 0.92968 0.91908 0.87459 0.85641 0.82955 0.90224 0.90063 0.90584 0.83939 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.26 8.57 71.24 0.61 -0.65 16 2 C -0.43 -21.70 6.38 25.45 0.16 -21.53 16 3 S 0.10 5.55 20.09 -56.49 -1.13 4.42 16 4 C 0.17 9.75 7.11 85.13 0.61 10.35 16 5 C -0.40 -21.95 9.44 23.14 0.22 -21.73 16 6 H 0.10 5.22 7.85 -2.91 -0.02 5.19 16 7 C 0.02 1.00 5.50 85.33 0.47 1.47 16 8 N -0.80 -38.72 10.64 21.87 0.23 -38.49 16 9 Si 1.02 35.28 29.56 68.60 2.03 37.31 16 10 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 11 H -0.26 -8.03 7.11 99.48 0.71 -7.32 16 12 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 13 N -0.62 -36.26 10.50 -183.97 -1.93 -38.19 16 14 C 0.11 6.00 6.38 41.64 0.27 6.27 16 15 C -0.03 -1.42 5.59 -20.03 -0.11 -1.53 16 16 C -0.11 -4.17 8.06 22.50 0.18 -3.98 16 17 C -0.12 -3.43 9.68 22.24 0.22 -3.22 16 18 C -0.09 -2.52 5.89 -19.81 -0.12 -2.64 16 19 C -0.11 -1.81 10.01 71.23 0.71 -1.09 16 20 C -0.12 -3.89 9.68 22.24 0.22 -3.67 16 21 C -0.11 -4.62 9.65 22.51 0.22 -4.40 16 22 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 2.31 6.61 -2.39 -0.02 2.29 16 25 H 0.31 13.24 8.29 -92.70 -0.77 12.47 16 26 H 0.13 4.41 5.91 -2.91 -0.02 4.39 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 30 H 0.08 1.13 8.08 -2.38 -0.02 1.11 16 31 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.10 4.43 8.04 -2.91 -0.02 4.41 16 Total: -1.00 -65.74 286.91 3.97 -61.77 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.13 Total: 19.55 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 3.64 Total: -46.36 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.70 Total: -76.68 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.13 Total: 4.42 kcal Total: -65.74 3.97 -61.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019507704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.844 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds