Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99965 * 2 1 4 4 H 1.48501 * 109.46969 * 274.98339 * 3 2 1 5 5 H 1.48501 * 109.47289 * 34.98042 * 3 2 1 6 6 H 1.48496 * 109.47267 * 154.98563 * 3 2 1 7 7 C 1.40146 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99722 * 186.52258 * 7 2 1 9 9 C 1.39846 * 120.00516 * 6.51996 * 7 2 1 10 10 N 1.31640 * 125.25464 * 173.35574 * 9 7 2 11 11 C 1.30829 * 116.35520 * 180.30127 * 10 9 7 12 12 C 1.39460 * 114.00154 * 358.98996 * 11 10 9 13 13 S 1.69968 * 109.44987 * 1.22958 * 12 11 10 14 14 C 1.50956 * 121.83327 * 181.25998 * 12 11 10 15 15 O 1.42875 * 109.14059 * 332.90241 * 14 12 11 16 16 C 1.35485 * 120.40480 * 42.82492 * 15 14 12 17 17 C 1.38706 * 120.33008 * 148.34242 * 16 15 14 18 18 C 1.38187 * 120.04357 * 178.12316 * 17 16 15 19 19 C 1.38438 * 120.85520 * 359.49330 * 18 17 16 20 20 C 1.38300 * 119.96309 * 0.56971 * 19 18 17 21 21 C 1.38471 * 119.35097 * 0.23204 * 20 19 18 22 22 H 0.97002 * 120.00344 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.53124 * 213.00710 * 14 12 11 24 24 H 1.09002 * 109.52800 * 92.79923 * 14 12 11 25 25 H 1.08004 * 119.98009 * 358.09842 * 17 16 15 26 26 H 1.07995 * 119.56901 * 179.22291 * 18 17 16 27 27 H 1.08005 * 120.01705 * 180.53781 * 19 18 17 28 28 H 1.08002 * 120.32482 * 180.24597 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1071 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0082 -1.2137 0.0005 8 1 3.0829 -1.2167 0.1068 9 6 1.3158 -2.4210 -0.1364 10 7 1.8736 -3.6055 -0.2736 11 6 1.0578 -4.6211 -0.3945 12 6 -0.2918 -4.2749 -0.3348 13 16 -0.4367 -2.5913 -0.1521 14 6 -1.3848 -5.3121 -0.4270 15 8 -0.9056 -6.4326 -1.1728 16 6 0.3423 -6.9152 -0.9596 17 6 0.6075 -8.2671 -1.1211 18 6 1.8907 -8.7469 -0.9399 19 6 2.9277 -7.8924 -0.6069 20 6 2.6832 -6.5415 -0.4401 21 6 1.3955 -6.0594 -0.6047 22 1 -0.4851 0.8400 -0.0004 23 1 -2.2520 -4.8840 -0.9296 24 1 -1.6660 -5.6351 0.5754 25 1 -0.1895 -8.9453 -1.3883 26 1 2.0861 -9.8027 -1.0552 27 1 3.9272 -8.2807 -0.4770 28 1 3.4886 -5.8690 -0.1843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019513961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = 4.254400 kcal Electronic energy + Delta-G solvation = -16118.954790 eV Core-core repulsion = 13418.601286 eV Total energy + Delta-G solvation = -2700.353505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87651 -37.15741 -36.82817 -34.27147 -31.21118 -29.98198 -29.43019 -27.66176 -24.13181 -23.34348 -21.97383 -20.93872 -18.51349 -17.77047 -17.01097 -16.39167 -15.42639 -15.35711 -14.78733 -14.41797 -13.74362 -13.45218 -13.16010 -12.88555 -12.75921 -12.26539 -11.99119 -11.83162 -11.46618 -11.33970 -10.89888 -10.76822 -10.60457 -10.01559 -9.81677 -9.47529 -8.72274 -8.06088 -7.91329 -7.77011 -7.25734 -6.91998 -4.85143 1.48657 1.82531 2.39053 2.85185 2.92072 2.93378 3.25160 3.57528 3.68736 3.88447 4.02032 4.38502 5.00710 5.18154 5.30455 5.44918 5.67705 5.76149 5.88329 5.99027 6.11449 6.15190 6.35150 6.61301 6.68087 6.72768 6.89784 7.11578 7.32090 7.32774 7.74307 8.02229 8.15151 8.22579 9.54187 9.65234 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.006083 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.776706 B = 4602.136781 C = 5304.992513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.053 3.947 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.365 4.365 8 H 0.107 0.893 9 C 0.201 3.799 10 N -0.579 5.579 11 C 0.159 3.841 12 C -0.509 4.509 13 S 0.159 5.841 14 C 0.188 3.812 15 O -0.328 6.328 16 C 0.141 3.859 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.158 4.158 20 C -0.066 4.066 21 C -0.064 4.064 22 H 0.301 0.699 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -5.216 -0.050 5.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.169 4.169 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.408 4.408 8 H 0.125 0.875 9 C -0.050 4.050 10 N -0.299 5.299 11 C 0.015 3.985 12 C -0.635 4.635 13 S 0.422 5.578 14 C 0.113 3.887 15 O -0.242 6.242 16 C 0.094 3.906 17 C -0.175 4.175 18 C -0.119 4.119 19 C -0.176 4.176 20 C -0.085 4.085 21 C -0.067 4.067 22 H 0.114 0.886 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.736 -4.375 -0.078 4.438 hybrid contribution 0.624 -0.038 -0.004 0.625 sum -0.112 -4.413 -0.081 4.415 Atomic orbital electron populations 1.68756 1.07813 1.31237 1.32748 1.26219 0.95150 1.02860 0.92710 0.85636 0.80112 0.77864 0.79590 1.18854 1.19575 1.17881 1.19052 0.96416 0.87404 1.37903 0.87542 1.23840 0.91291 0.93741 0.96176 1.66665 1.35245 0.97374 1.30628 1.19050 0.87879 0.91698 0.99846 1.26560 0.98455 1.04416 1.34081 1.83835 1.11060 0.92111 1.70810 1.20628 0.93012 0.81222 0.93882 1.85430 1.28314 1.48342 1.62122 1.18934 0.83749 0.91580 0.96296 1.20476 0.97734 0.92166 1.07158 1.20830 0.92062 0.99285 0.99751 1.21041 0.98950 0.93471 1.04121 1.20943 0.95664 0.95014 0.96875 1.18707 0.93169 0.91172 1.03695 0.88568 0.88966 0.93504 0.85673 0.86116 0.86190 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.92 10.67 55.56 0.59 -17.32 15 2 C 0.05 1.21 5.49 -17.30 -0.09 1.11 15 3 Si 0.95 16.82 29.57 -169.99 -5.03 11.80 15 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 7 C -0.36 -9.21 9.43 -38.26 -0.36 -9.57 15 8 H 0.11 2.58 7.86 -52.49 -0.41 2.17 15 9 C 0.20 5.44 7.11 -17.03 -0.12 5.32 15 10 N -0.58 -15.88 10.63 -8.71 -0.09 -15.97 15 11 C 0.16 4.12 6.89 -83.27 -0.57 3.54 15 12 C -0.51 -12.57 6.49 -33.73 -0.22 -12.79 15 13 S 0.16 3.99 20.11 -107.50 -2.16 1.83 15 14 C 0.19 3.92 7.43 36.13 0.27 4.19 15 15 O -0.33 -6.90 10.18 -18.15 -0.18 -7.08 15 16 C 0.14 2.92 6.52 -38.64 -0.25 2.67 15 17 C -0.16 -2.63 9.99 -39.43 -0.39 -3.02 15 18 C -0.10 -1.49 10.00 -39.53 -0.40 -1.88 15 19 C -0.16 -2.49 10.06 -39.48 -0.40 -2.89 15 20 C -0.07 -1.29 9.84 -39.47 -0.39 -1.68 15 21 C -0.06 -1.45 5.89 -104.47 -0.62 -2.07 15 22 H 0.30 6.16 8.29 -40.82 -0.34 5.82 15 23 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.13 1.78 8.06 -52.48 -0.42 1.36 15 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 27 H 0.12 1.52 8.06 -52.48 -0.42 1.09 15 28 H 0.13 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -28.64 262.31 -8.55 -37.19 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.08 Total: 2.69 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.54 Total: -17.08 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.50 Total: -33.29 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.18 Total: -7.08 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.16 Total: 1.83 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.64 -8.55 -37.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019513961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.440 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds