Wall clock time and date at job start Mon Mar 30 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99965 * 2 1 4 4 H 1.48501 * 109.46969 * 274.98339 * 3 2 1 5 5 H 1.48501 * 109.47289 * 34.98042 * 3 2 1 6 6 H 1.48496 * 109.47267 * 154.98563 * 3 2 1 7 7 C 1.40146 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99722 * 186.52258 * 7 2 1 9 9 C 1.39846 * 120.00516 * 6.51996 * 7 2 1 10 10 N 1.31640 * 125.25464 * 173.35574 * 9 7 2 11 11 C 1.30829 * 116.35520 * 180.30127 * 10 9 7 12 12 C 1.39460 * 114.00154 * 358.98996 * 11 10 9 13 13 S 1.69968 * 109.44987 * 1.22958 * 12 11 10 14 14 C 1.50956 * 121.83327 * 181.25998 * 12 11 10 15 15 O 1.42875 * 109.14059 * 332.90241 * 14 12 11 16 16 C 1.35485 * 120.40480 * 42.82492 * 15 14 12 17 17 C 1.38706 * 120.33008 * 148.34242 * 16 15 14 18 18 C 1.38187 * 120.04357 * 178.12316 * 17 16 15 19 19 C 1.38438 * 120.85520 * 359.49330 * 18 17 16 20 20 C 1.38300 * 119.96309 * 0.56971 * 19 18 17 21 21 C 1.38471 * 119.35097 * 0.23204 * 20 19 18 22 22 H 0.97002 * 120.00344 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.53124 * 213.00710 * 14 12 11 24 24 H 1.09002 * 109.52800 * 92.79923 * 14 12 11 25 25 H 1.08004 * 119.98009 * 358.09842 * 17 16 15 26 26 H 1.07995 * 119.56901 * 179.22291 * 18 17 16 27 27 H 1.08005 * 120.01705 * 180.53781 * 19 18 17 28 28 H 1.08002 * 120.32482 * 180.24597 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1071 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0082 -1.2137 0.0005 8 1 3.0829 -1.2167 0.1068 9 6 1.3158 -2.4210 -0.1364 10 7 1.8736 -3.6055 -0.2736 11 6 1.0578 -4.6211 -0.3945 12 6 -0.2918 -4.2749 -0.3348 13 16 -0.4367 -2.5913 -0.1521 14 6 -1.3848 -5.3121 -0.4270 15 8 -0.9056 -6.4326 -1.1728 16 6 0.3423 -6.9152 -0.9596 17 6 0.6075 -8.2671 -1.1211 18 6 1.8907 -8.7469 -0.9399 19 6 2.9277 -7.8924 -0.6069 20 6 2.6832 -6.5415 -0.4401 21 6 1.3955 -6.0594 -0.6047 22 1 -0.4851 0.8400 -0.0004 23 1 -2.2520 -4.8840 -0.9296 24 1 -1.6660 -5.6351 0.5754 25 1 -0.1895 -8.9453 -1.3883 26 1 2.0861 -9.8027 -1.0552 27 1 3.9272 -8.2807 -0.4770 28 1 3.4886 -5.8690 -0.1843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019513961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:53 Heat of formation + Delta-G solvation = -13.204799 kcal Electronic energy + Delta-G solvation = -16119.711878 eV Core-core repulsion = 13418.601286 eV Total energy + Delta-G solvation = -2701.110592 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42660 -38.94888 -38.30964 -36.08310 -32.83239 -31.44740 -31.00240 -29.48324 -25.80021 -24.99657 -23.52774 -22.56271 -20.22512 -19.46566 -18.66057 -18.09296 -17.07693 -16.83249 -16.44236 -15.91646 -15.26139 -15.03357 -14.75250 -14.61990 -14.36443 -13.72754 -13.67991 -13.50834 -12.99786 -12.77826 -12.56677 -12.21936 -12.02702 -11.66498 -11.43682 -11.27363 -10.27497 -9.92710 -9.78739 -9.40121 -9.01189 -8.68803 -6.76635 -0.07055 0.42622 0.67075 1.35131 1.36777 1.47525 1.56378 1.86678 2.12425 2.16882 2.41051 2.83690 3.16775 3.58462 3.92020 4.12378 4.25894 4.36023 4.38335 4.43816 4.51909 4.72069 4.87880 4.91883 5.15161 5.28946 5.48469 5.58031 5.65602 5.83634 5.90491 6.28891 6.31545 6.48918 7.62891 7.92317 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.006083 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.776706 B = 4602.136781 C = 5304.992513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.020 3.980 3 Si 1.022 2.978 4 H -0.257 1.257 5 H -0.254 1.254 6 H -0.254 1.254 7 C -0.389 4.389 8 H 0.105 0.895 9 C 0.164 3.836 10 N -0.614 5.614 11 C 0.135 3.865 12 C -0.531 4.531 13 S 0.149 5.851 14 C 0.190 3.810 15 O -0.333 6.333 16 C 0.113 3.887 17 C -0.149 4.149 18 C -0.079 4.079 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.109 4.109 22 H 0.316 0.684 23 H 0.111 0.889 24 H 0.058 0.942 25 H 0.156 0.844 26 H 0.174 0.826 27 H 0.159 0.841 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -6.497 -0.321 6.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.201 4.201 3 Si 0.839 3.161 4 H -0.182 1.182 5 H -0.178 1.178 6 H -0.177 1.177 7 C -0.432 4.432 8 H 0.123 0.877 9 C -0.086 4.086 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.656 4.656 13 S 0.411 5.589 14 C 0.114 3.886 15 O -0.248 6.248 16 C 0.066 3.934 17 C -0.167 4.167 18 C -0.097 4.097 19 C -0.162 4.162 20 C -0.102 4.102 21 C -0.112 4.112 22 H 0.129 0.871 23 H 0.128 0.872 24 H 0.076 0.924 25 H 0.174 0.826 26 H 0.192 0.808 27 H 0.177 0.823 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.269 -5.698 -0.349 5.715 hybrid contribution 0.517 0.260 0.080 0.584 sum 0.248 -5.438 -0.269 5.450 Atomic orbital electron populations 1.68767 1.09145 1.33136 1.31127 1.27265 0.95971 1.05641 0.91219 0.84553 0.78664 0.72870 0.79978 1.18169 1.17751 1.17688 1.19428 0.96725 0.88280 1.38759 0.87691 1.24351 0.92555 0.94466 0.97202 1.66701 1.36325 0.98042 1.32448 1.19722 0.88479 0.93252 0.99262 1.26988 0.99452 1.04808 1.34400 1.83477 1.10193 0.93229 1.72037 1.20731 0.92321 0.80575 0.94940 1.85397 1.28776 1.48072 1.62534 1.19373 0.83022 0.93033 0.97923 1.20952 0.99680 0.90616 1.05468 1.21444 0.90460 1.01571 0.96230 1.21473 1.01316 0.91546 1.01866 1.21017 0.94252 0.96978 0.97941 1.18930 0.95244 0.89898 1.07151 0.87060 0.87162 0.92367 0.82639 0.80834 0.82303 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.93 10.67 21.86 0.23 -36.70 15 2 C 0.02 0.90 5.49 85.32 0.47 1.37 15 3 Si 1.02 33.73 29.57 68.60 2.03 35.76 15 4 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 5 H -0.25 -7.66 7.11 99.48 0.71 -6.95 15 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 7 C -0.39 -20.43 9.43 23.12 0.22 -20.21 15 8 H 0.11 5.34 7.86 -2.91 -0.02 5.31 15 9 C 0.16 9.39 7.11 85.11 0.61 10.00 15 10 N -0.61 -35.77 10.63 -181.46 -1.93 -37.70 15 11 C 0.14 7.38 6.89 42.55 0.29 7.67 15 12 C -0.53 -27.43 6.49 26.06 0.17 -27.26 15 13 S 0.15 7.82 20.11 -56.49 -1.14 6.68 15 14 C 0.19 8.07 7.43 71.32 0.53 8.60 15 15 O -0.33 -14.03 10.18 -87.85 -0.89 -14.93 15 16 C 0.11 4.62 6.52 22.88 0.15 4.77 15 17 C -0.15 -4.51 9.99 22.37 0.22 -4.28 15 18 C -0.08 -1.95 10.00 22.31 0.22 -1.73 15 19 C -0.14 -4.10 10.06 22.33 0.22 -3.87 15 20 C -0.08 -3.26 9.84 22.34 0.22 -3.04 15 21 C -0.11 -5.07 5.89 -19.77 -0.12 -5.19 15 22 H 0.32 12.73 8.29 -92.71 -0.77 11.96 15 23 H 0.11 4.15 8.14 -2.39 -0.02 4.13 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.16 3.73 8.06 -2.91 -0.02 3.71 15 26 H 0.17 2.58 8.06 -2.91 -0.02 2.56 15 27 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 28 H 0.12 4.76 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -66.86 262.31 2.71 -64.16 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.20 Total: 15.91 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.21 Total: -33.18 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.70 Total: -74.39 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.89 Total: -14.93 kcal Atomic # 14 Polarization: 33.73 SS G_CDS: 2.03 Total: 35.76 kcal Atomic # 16 Polarization: 7.82 SS G_CDS: -1.14 Total: 6.68 kcal Total: -66.86 2.71 -64.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019513961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.950 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds