Wall clock time and date at job start Mon Mar 30 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 C 1.53006 * 109.47161 * 240.00085 * 2 1 3 5 5 N 1.46502 * 109.47319 * 120.00303 * 2 1 3 6 6 C 1.38667 * 119.99632 * 59.99653 * 5 2 1 7 7 N 1.30244 * 126.09713 * 0.04365 * 6 5 2 8 8 N 1.26105 * 117.70856 * 179.66969 * 7 6 5 9 9 C 1.30215 * 117.72474 * 0.55721 * 8 7 6 10 10 S 1.76197 * 126.08986 * 179.75336 * 9 8 7 11 11 C 1.76199 * 100.00148 * 359.69344 * 10 9 8 12 12 H 1.07999 * 119.99976 * 0.02562 * 11 10 9 13 13 C 1.38543 * 119.99631 * 179.97438 * 11 10 9 14 14 N 1.31724 * 119.99487 * 179.97438 * 13 11 10 15 15 Si 1.86789 * 120.00442 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47640 * 89.99609 * 15 13 11 17 17 H 1.48505 * 109.47346 * 209.99765 * 15 13 11 18 18 H 1.48505 * 109.47048 * 329.99484 * 15 13 11 19 19 S 1.76473 * 107.81773 * 359.49645 * 9 8 7 20 20 H 1.09003 * 109.46704 * 299.99917 * 1 2 3 21 21 H 1.08994 * 109.46970 * 59.99640 * 1 2 3 22 22 H 1.08994 * 109.47127 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47475 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.46845 * 300.00162 * 3 2 1 25 25 H 1.09005 * 109.46229 * 59.99933 * 3 2 1 26 26 H 1.08994 * 109.47171 * 300.00060 * 4 2 1 27 27 H 1.08994 * 109.46954 * 60.00265 * 4 2 1 28 28 H 1.08998 * 109.47004 * 180.02562 * 4 2 1 29 29 H 0.97002 * 120.00348 * 240.00402 * 5 2 1 30 30 H 0.97005 * 119.99776 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.6833 -2.0183 1.4155 7 7 0.9467 -2.7619 0.6404 8 7 0.7468 -3.9565 0.9912 9 6 1.2821 -4.3574 2.1085 10 16 1.1412 -5.9687 2.8075 11 6 0.1253 -6.7414 1.5928 12 1 -0.2048 -6.1822 0.7299 13 6 -0.2490 -8.0667 1.7443 14 7 -1.0089 -8.6442 0.8364 15 14 0.3226 -9.0341 3.2364 16 1 -0.6697 -8.8874 4.3314 17 1 0.4534 -10.4688 2.8759 18 1 1.6387 -8.5153 3.6883 19 16 2.1799 -3.0017 2.7942 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9562 0.8901 26 1 1.6767 -1.7489 -1.2493 27 1 1.6768 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 2.5760 -0.2193 1.8347 30 1 -1.2713 -9.5720 0.9426 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032607131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:19 Heat of formation + Delta-G solvation = 55.417387 kcal Electronic energy + Delta-G solvation = -14816.985288 eV Core-core repulsion = 12286.587080 eV Total energy + Delta-G solvation = -2530.398208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05520 -37.89571 -32.66953 -32.51864 -29.37299 -27.42672 -27.16127 -25.83795 -25.04503 -21.30051 -19.23266 -18.98322 -17.58783 -16.73788 -15.68737 -15.18309 -15.00190 -14.42934 -14.27657 -13.59698 -13.14101 -12.69631 -12.45248 -12.44419 -12.10010 -11.72449 -11.63550 -11.48095 -11.24330 -11.16692 -10.89152 -10.54655 -10.18796 -9.64729 -9.54639 -9.41608 -9.05871 -8.91726 -8.13357 -6.88979 -6.45939 -4.22145 1.21916 1.32409 1.88432 2.55251 3.12712 3.20175 3.25311 3.46578 3.48479 4.06705 4.41766 4.72291 4.86226 4.93324 5.00731 5.29368 5.45965 5.55877 5.74696 5.77437 5.87624 5.97350 6.01038 6.01427 6.47800 6.50967 7.13590 7.45461 7.79802 8.59565 8.92522 9.57466 10.62608 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.005226 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.381109 B = 5356.612484 C = 5802.926980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 C -0.152 4.152 4 C -0.166 4.166 5 N -0.690 5.690 6 C 0.268 3.732 7 N -0.317 5.317 8 N -0.249 5.249 9 C 0.014 3.986 10 S 0.085 5.915 11 C -0.525 4.525 12 H 0.122 0.878 13 C 0.100 3.900 14 N -0.858 5.858 15 Si 0.844 3.156 16 H -0.261 1.261 17 H -0.264 1.264 18 H -0.238 1.238 19 S -0.001 6.001 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.408 0.592 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 16.117 2.284 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.098 3.902 3 C -0.210 4.210 4 C -0.224 4.224 5 N -0.333 5.333 6 C -0.109 4.109 7 N -0.162 5.162 8 N -0.089 5.089 9 C -0.375 4.375 10 S 0.318 5.682 11 C -0.675 4.675 12 H 0.139 0.861 13 C -0.111 4.111 14 N -0.492 5.492 15 Si 0.667 3.333 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.162 1.162 19 S 0.233 5.767 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.102 0.898 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.244 0.756 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.232 15.376 2.812 17.223 hybrid contribution -0.135 0.120 -0.256 0.314 sum 7.097 15.496 2.555 17.234 Atomic orbital electron populations 1.22253 0.94390 1.04517 1.01246 1.20276 0.94347 0.90961 0.84619 1.22057 1.01465 0.94600 1.02919 1.22252 1.00712 1.03310 0.96133 1.43814 1.57443 1.05761 1.26265 1.26502 0.98944 0.91928 0.93559 1.71108 1.18851 0.99375 1.26865 1.71365 1.21126 1.04778 1.11649 1.31130 1.03055 1.04968 0.98372 1.82878 1.60601 0.94368 1.30317 1.22672 1.34505 1.00079 1.10196 0.86053 1.24730 0.93730 0.96290 0.96363 1.69960 1.32614 1.13266 1.33379 0.86984 0.81470 0.81524 0.83274 1.18571 1.18862 1.16210 1.85255 1.56506 1.07924 1.27002 0.92983 0.92017 0.89821 0.92056 0.90714 0.92060 0.89819 0.92014 0.92987 0.75608 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.43 37.16 0.31 -1.78 16 2 C 0.19 2.14 1.07 -131.81 -0.14 2.00 16 3 C -0.15 -1.21 8.59 37.16 0.32 -0.89 16 4 C -0.17 -2.09 8.43 37.16 0.31 -1.78 16 5 N -0.69 -8.89 5.24 -47.94 -0.25 -9.14 16 6 C 0.27 4.66 7.76 -87.17 -0.68 3.98 16 7 N -0.32 -6.67 7.84 30.99 0.24 -6.43 16 8 N -0.25 -6.05 10.36 31.30 0.32 -5.73 16 9 C 0.01 0.31 7.82 52.08 0.41 0.71 16 10 S 0.08 2.02 19.85 -107.50 -2.13 -0.12 16 11 C -0.52 -14.90 9.90 30.84 0.31 -14.59 16 12 H 0.12 3.84 7.14 -52.49 -0.37 3.46 16 13 C 0.10 2.79 5.49 -17.49 -0.10 2.69 16 14 N -0.86 -25.05 13.97 55.48 0.78 -24.27 16 15 Si 0.84 19.45 27.73 -169.99 -4.71 14.74 16 16 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.24 -5.20 6.73 56.52 0.38 -4.82 16 19 S 0.00 -0.01 23.53 -107.50 -2.53 -2.54 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.08 1.37 6.29 -51.93 -0.33 1.04 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.37 6.28 -51.93 -0.33 1.04 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.41 4.11 8.60 -40.82 -0.35 3.76 16 30 H 0.28 7.36 8.32 -40.82 -0.34 7.02 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -30.61 280.60 -6.81 -37.42 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.49 Total: 1.49 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.74 Total: -9.65 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 1.09 Total: -45.57 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -4.66 Total: -2.66 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.61 -6.81 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032607131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.839 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds