Wall clock time and date at job start Mon Mar 30 2020 06:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47007 * 269.99859 * 3 2 1 5 5 H 1.48499 * 109.46996 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46947 * 149.99761 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.40000 * 119.99414 * 179.97438 * 10 9 7 12 12 C 1.38641 * 120.10373 * 0.02562 * 11 10 9 13 13 C 1.38284 * 120.00818 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.20418 * 359.97438 * 13 12 11 15 15 C 1.38247 * 120.19312 * 0.02562 * 14 13 12 16 16 C 1.38724 * 119.99820 * 0.02562 * 15 14 13 17 17 S 1.76201 * 120.10569 * 179.97438 * 16 15 14 18 18 C 1.81406 * 102.99596 * 359.97438 * 17 16 15 19 19 F 1.39895 * 109.47333 * 300.00270 * 18 17 16 20 20 F 1.39900 * 109.46999 * 60.00504 * 18 17 16 21 21 H 0.97009 * 119.99451 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46845 * 60.00044 * 9 7 2 23 23 H 1.08999 * 109.47083 * 299.99683 * 9 7 2 24 24 H 0.97001 * 120.00343 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.99368 * 359.95163 * 12 11 10 26 26 H 1.08004 * 119.90252 * 180.02562 * 13 12 11 27 27 H 1.07996 * 119.90390 * 179.74422 * 14 13 12 28 28 H 1.08007 * 120.00130 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.46714 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7361 -4.9326 0.0011 12 6 0.3734 -5.1883 0.0011 13 6 -0.0855 -6.4928 0.0011 14 6 0.8110 -7.5456 0.0005 15 6 2.1715 -7.3003 0.0005 16 6 2.6409 -5.9948 0.0016 17 16 4.3743 -5.6789 0.0023 18 6 5.0926 -7.3447 0.0021 19 9 4.6712 -8.0345 1.1439 20 9 4.6721 -8.0337 -1.1406 21 1 -0.4850 0.8402 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 3.1566 -3.4356 0.0009 25 1 -0.3297 -4.3686 0.0014 26 1 -1.1474 -6.6900 0.0007 27 1 0.4472 -8.5624 0.0047 28 1 2.8690 -8.1249 -0.0003 29 1 6.1801 -7.2714 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:56 Heat of formation + Delta-G solvation = -69.795417 kcal Electronic energy + Delta-G solvation = -16570.759424 eV Core-core repulsion = 13448.798443 eV Total energy + Delta-G solvation = -3121.960981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.35057 -47.34332 -38.86177 -35.10721 -32.68649 -30.72908 -29.21098 -27.09215 -26.30503 -23.30890 -22.27490 -20.82079 -18.71910 -17.95442 -17.54788 -17.08226 -16.43062 -15.76489 -15.19554 -14.45303 -14.25790 -14.16482 -13.80758 -13.68052 -13.51451 -13.04120 -12.89000 -12.36858 -12.12523 -12.03807 -11.39147 -10.99670 -10.93204 -10.58609 -10.25459 -10.19125 -9.77591 -9.45227 -9.43815 -8.58383 -7.76713 -6.60390 -6.25088 -4.30527 0.84225 1.61251 2.04649 2.12575 3.21216 3.27552 3.30621 3.60642 4.18203 4.18378 4.23752 4.33375 4.43483 5.12477 5.17709 5.39351 5.65479 5.85461 6.03010 6.25551 6.58561 6.67369 6.94358 7.01611 7.28314 7.34060 7.57487 7.87105 8.12171 8.52792 8.80766 9.35927 10.85462 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027246 B = 0.005430 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.436633 B = 5154.926439 C = 6002.569422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.720 5.720 11 C 0.264 3.736 12 C -0.189 4.189 13 C -0.062 4.062 14 C -0.187 4.187 15 C -0.071 4.071 16 C -0.195 4.195 17 S -0.105 6.105 18 C 0.272 3.728 19 F -0.184 7.184 20 F -0.184 7.184 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.392 0.608 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -14.021 0.007 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.342 5.342 11 C 0.149 3.851 12 C -0.214 4.214 13 C -0.082 4.082 14 C -0.209 4.209 15 C -0.094 4.094 16 C -0.313 4.313 17 S 0.129 5.871 18 C 0.109 3.891 19 F -0.166 7.166 20 F -0.166 7.166 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.227 0.773 25 H 0.151 0.849 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.141 -12.692 0.012 14.563 hybrid contribution -0.004 -0.266 -0.010 0.266 sum 7.137 -12.958 0.002 14.793 Atomic orbital electron populations 1.69943 1.06082 1.27438 1.49139 1.24918 0.94951 0.99469 0.94525 0.86390 0.79706 0.82433 0.78309 1.20390 1.20935 1.19675 1.21169 0.93394 0.90279 1.53009 0.91933 1.19203 0.88573 0.82475 0.96887 1.45750 1.09745 1.02251 1.76458 1.17557 0.92009 0.84416 0.91133 1.20731 0.93255 0.97593 1.09844 1.20952 0.99148 0.92056 0.96065 1.20590 0.92322 0.98588 1.09443 1.20936 0.96703 0.93545 0.98195 1.20666 0.93255 0.96021 1.21319 1.86030 1.01252 1.05692 1.94136 1.24297 1.01688 0.89862 0.73279 1.93096 1.91848 1.81368 1.50275 1.93097 1.91877 1.81406 1.50215 0.92397 0.95810 0.95793 0.77297 0.84898 0.86227 0.86620 0.86525 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.52 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 15 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 15 9 C 0.25 6.30 4.67 -5.19 -0.02 6.27 15 10 N -0.72 -15.70 5.68 -59.62 -0.34 -16.04 15 11 C 0.26 5.25 6.66 -83.49 -0.56 4.70 15 12 C -0.19 -3.55 9.31 -39.42 -0.37 -3.92 15 13 C -0.06 -0.97 10.04 -39.55 -0.40 -1.37 15 14 C -0.19 -2.84 10.04 -39.56 -0.40 -3.24 15 15 C -0.07 -1.15 8.68 -39.40 -0.34 -1.49 15 16 C -0.20 -3.48 6.12 -38.92 -0.24 -3.72 15 17 S -0.11 -1.59 20.69 -107.50 -2.22 -3.81 15 18 C 0.27 3.11 5.37 101.05 0.54 3.65 15 19 F -0.18 -2.34 15.65 2.25 0.04 -2.31 15 20 F -0.18 -2.35 15.64 2.25 0.04 -2.31 15 21 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.02 0.64 7.95 -51.93 -0.41 0.23 15 23 H 0.02 0.65 7.95 -51.93 -0.41 0.23 15 24 H 0.39 8.26 6.87 -40.82 -0.28 7.98 15 25 H 0.13 2.58 6.74 -52.49 -0.35 2.23 15 26 H 0.12 1.54 8.06 -52.48 -0.42 1.11 15 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 28 H 0.12 1.74 4.55 -52.48 -0.24 1.51 15 29 H 0.15 1.05 8.14 -51.92 -0.42 0.63 15 LS Contribution 271.66 15.07 4.09 4.09 Total: -1.00 -28.86 271.66 -7.38 -36.24 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.50 Total: 5.26 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.20 Total: -12.38 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.40 Total: -40.56 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.07 Total: -4.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.22 Total: -3.81 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.86 -7.38 -36.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.553 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds