Wall clock time and date at job start Mon Mar 30 2020 06:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47007 * 269.99859 * 3 2 1 5 5 H 1.48499 * 109.46996 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46947 * 149.99761 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46824 * 179.97438 * 9 7 2 11 11 C 1.40000 * 119.99414 * 179.97438 * 10 9 7 12 12 C 1.38641 * 120.10373 * 0.02562 * 11 10 9 13 13 C 1.38284 * 120.00818 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.20418 * 359.97438 * 13 12 11 15 15 C 1.38247 * 120.19312 * 0.02562 * 14 13 12 16 16 C 1.38724 * 119.99820 * 0.02562 * 15 14 13 17 17 S 1.76201 * 120.10569 * 179.97438 * 16 15 14 18 18 C 1.81406 * 102.99596 * 359.97438 * 17 16 15 19 19 F 1.39895 * 109.47333 * 300.00270 * 18 17 16 20 20 F 1.39900 * 109.46999 * 60.00504 * 18 17 16 21 21 H 0.97009 * 119.99451 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46845 * 60.00044 * 9 7 2 23 23 H 1.08999 * 109.47083 * 299.99683 * 9 7 2 24 24 H 0.97001 * 120.00343 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.99368 * 359.95163 * 12 11 10 26 26 H 1.08004 * 119.90252 * 180.02562 * 13 12 11 27 27 H 1.07996 * 119.90390 * 179.74422 * 14 13 12 28 28 H 1.08007 * 120.00130 * 180.02562 * 15 14 13 29 29 H 1.08999 * 109.46714 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7361 -4.9326 0.0011 12 6 0.3734 -5.1883 0.0011 13 6 -0.0855 -6.4928 0.0011 14 6 0.8110 -7.5456 0.0005 15 6 2.1715 -7.3003 0.0005 16 6 2.6409 -5.9948 0.0016 17 16 4.3743 -5.6789 0.0023 18 6 5.0926 -7.3447 0.0021 19 9 4.6712 -8.0345 1.1439 20 9 4.6721 -8.0337 -1.1406 21 1 -0.4850 0.8402 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 3.1566 -3.4356 0.0009 25 1 -0.3297 -4.3686 0.0014 26 1 -1.1474 -6.6900 0.0007 27 1 0.4472 -8.5624 0.0047 28 1 2.8690 -8.1249 -0.0003 29 1 6.1801 -7.2714 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:56 Heat of formation + Delta-G solvation = -86.629071 kcal Electronic energy + Delta-G solvation = -16571.489386 eV Core-core repulsion = 13448.798443 eV Total energy + Delta-G solvation = -3122.690943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.32343 -48.31908 -40.27133 -36.78363 -34.65216 -32.08227 -30.86971 -28.28427 -27.85937 -25.07713 -23.69789 -22.36810 -19.97604 -18.98321 -18.73557 -18.51110 -17.74206 -17.31402 -16.96377 -16.08453 -15.43168 -15.34051 -15.12212 -15.10504 -14.68031 -14.65718 -14.21145 -13.95151 -13.80502 -13.40772 -12.93773 -12.78661 -12.55808 -12.17806 -11.77224 -11.51282 -11.32408 -11.22156 -10.93314 -10.56973 -9.09432 -8.33430 -8.10747 -6.47452 -0.18810 0.26423 0.66124 0.88128 1.39985 1.41229 1.52583 2.31889 2.75111 2.75915 2.82525 3.01992 3.38855 3.44315 3.83821 4.16336 4.39770 4.48398 4.61423 4.90207 4.97290 5.21270 5.24068 5.38279 5.48898 5.62605 5.81424 5.97664 6.34253 6.64674 6.96971 7.24950 8.78205 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027246 B = 0.005430 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.436633 B = 5154.926439 C = 6002.569422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.272 3.728 10 N -0.730 5.730 11 C 0.229 3.771 12 C -0.210 4.210 13 C -0.058 4.058 14 C -0.173 4.173 15 C -0.078 4.078 16 C -0.199 4.199 17 S -0.133 6.133 18 C 0.283 3.717 19 F -0.189 7.189 20 F -0.189 7.189 21 H 0.270 0.730 22 H -0.004 1.004 23 H -0.003 1.003 24 H 0.394 0.606 25 H 0.112 0.888 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -15.525 0.006 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.085 0.915 9 C 0.150 3.850 10 N -0.355 5.355 11 C 0.118 3.882 12 C -0.235 4.235 13 C -0.079 4.079 14 C -0.195 4.195 15 C -0.101 4.101 16 C -0.315 4.315 17 S 0.101 5.899 18 C 0.121 3.879 19 F -0.170 7.170 20 F -0.170 7.170 21 H 0.079 0.921 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.229 0.771 25 H 0.130 0.870 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.510 -14.254 0.010 16.601 hybrid contribution -0.448 -0.008 -0.010 0.448 sum 8.062 -14.263 0.000 16.384 Atomic orbital electron populations 1.70067 1.07729 1.28581 1.49795 1.25883 0.95838 1.03274 0.93773 0.85266 0.78490 0.77556 0.78626 1.19595 1.20351 1.18753 1.21527 0.93807 0.91290 1.53188 0.91525 1.18642 0.88540 0.83607 0.94242 1.45371 1.08991 1.02333 1.78826 1.17825 0.93037 0.84121 0.93209 1.20819 0.92840 0.98680 1.11165 1.21288 1.01103 0.90723 0.94743 1.21082 0.91755 1.00141 1.06474 1.21269 0.97761 0.93238 0.97881 1.20910 0.94680 0.96005 1.19946 1.86045 0.99724 1.10119 1.93982 1.24696 1.03468 0.87122 0.72606 1.93086 1.92107 1.81168 1.50673 1.93087 1.92135 1.81206 1.50614 0.92089 0.98576 0.98556 0.77120 0.87006 0.83068 0.82844 0.84844 0.77897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 13.29 21.45 0.28 -53.72 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.98 42.89 29.54 68.60 2.03 44.92 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.56 -31.28 9.28 25.60 0.24 -31.04 15 8 H 0.07 3.57 7.60 -2.91 -0.02 3.55 15 9 C 0.27 14.60 4.67 85.64 0.40 15.00 15 10 N -0.73 -33.44 5.68 -342.52 -1.94 -35.38 15 11 C 0.23 9.43 6.66 38.25 0.25 9.68 15 12 C -0.21 -8.15 9.31 22.38 0.21 -7.94 15 13 C -0.06 -1.76 10.04 22.29 0.22 -1.54 15 14 C -0.17 -4.75 10.04 22.28 0.22 -4.53 15 15 C -0.08 -2.38 8.68 22.39 0.19 -2.19 15 16 C -0.20 -6.99 6.12 22.70 0.14 -6.85 15 17 S -0.13 -3.87 20.69 -56.49 -1.17 -5.04 15 18 C 0.28 5.61 5.37 113.37 0.61 6.22 15 19 F -0.19 -4.24 15.65 44.97 0.70 -3.53 15 20 F -0.19 -4.24 15.64 44.97 0.70 -3.53 15 21 H 0.27 14.75 8.31 -92.70 -0.77 13.98 15 22 H 0.00 -0.21 7.95 -2.39 -0.02 -0.22 15 23 H 0.00 -0.19 7.95 -2.39 -0.02 -0.21 15 24 H 0.39 17.30 6.87 -92.71 -0.64 16.67 15 25 H 0.11 4.70 6.74 -2.91 -0.02 4.68 15 26 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.15 3.09 8.06 -2.91 -0.02 3.06 15 28 H 0.13 3.58 4.55 -2.91 -0.01 3.57 15 29 H 0.20 1.95 8.14 -2.39 -0.02 1.94 15 Total: -1.00 -64.30 271.66 4.11 -60.19 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.55 Total: 18.14 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 2.95 Total: -22.03 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.66 Total: -89.11 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.41 Total: -7.07 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.17 Total: -5.04 kcal Total: -64.30 4.11 -60.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.443 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds