Wall clock time and date at job start Mon Mar 30 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38786 * 119.05734 * 2 1 4 4 C 1.38831 * 119.65907 * 180.02562 * 3 2 1 5 5 S 1.76207 * 121.07236 * 179.97438 * 4 3 2 6 6 C 1.76198 * 99.99985 * 9.21361 * 5 4 3 7 7 H 1.08002 * 120.00142 * 5.33366 * 6 5 4 8 8 C 1.38814 * 120.00203 * 185.05748 * 6 5 4 9 9 N 1.31540 * 120.00382 * 180.27828 * 8 6 5 10 10 Si 1.86804 * 119.99772 * 0.27470 * 8 6 5 11 11 H 1.48502 * 109.47088 * 90.00187 * 10 8 6 12 12 H 1.48500 * 109.47047 * 209.99799 * 10 8 6 13 13 H 1.48498 * 109.47207 * 330.00297 * 10 8 6 14 14 C 1.41683 * 117.85526 * 0.24842 * 4 3 2 15 15 C 1.40079 * 121.35870 * 180.25822 * 14 4 3 16 16 C 1.36326 * 119.63853 * 179.68896 * 15 14 4 17 17 C 1.39243 * 120.80560 * 359.77812 * 16 15 14 18 18 C 1.36166 * 121.02329 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.12332 * 180.02562 * 18 17 16 20 20 C 1.40559 * 119.75640 * 359.97438 * 18 17 16 21 21 N 1.31295 * 119.06359 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47082 * 89.99924 * 1 2 3 23 23 H 1.09005 * 109.46966 * 209.99692 * 1 2 3 24 24 H 1.09003 * 109.47266 * 330.00028 * 1 2 3 25 25 H 1.08000 * 120.17500 * 0.02562 * 3 2 1 26 26 H 0.96996 * 120.00269 * 180.02562 * 9 8 6 27 27 H 1.07999 * 120.18207 * 359.42818 * 15 14 4 28 28 H 1.07994 * 119.59941 * 179.76519 * 16 15 14 29 29 H 1.07994 * 119.48624 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46742 * 269.97591 * 19 18 17 31 31 H 1.08996 * 109.47217 * 29.96816 * 19 18 17 32 32 H 1.08994 * 109.47490 * 149.97518 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.2132 0.0000 4 6 3.5693 1.2278 -0.0005 5 16 4.4628 2.7465 -0.0012 6 6 3.1418 3.8788 0.2769 7 1 2.1464 3.5093 0.4742 8 6 3.3817 5.2458 0.2480 9 7 2.3966 6.0911 0.4610 10 14 5.1035 5.8849 -0.0933 11 1 5.2804 6.0744 -1.5555 12 1 5.2961 7.1834 0.6009 13 1 6.1027 4.9050 0.4033 14 6 4.2444 -0.0179 -0.0065 15 6 5.6434 -0.0888 -0.0020 16 6 6.2567 -1.3063 -0.0016 17 6 5.5094 -2.4812 -0.0009 18 6 4.1482 -2.4471 -0.0001 19 6 3.3595 -3.7312 0.0012 20 6 3.4813 -1.2098 0.0005 21 7 2.1448 -1.1476 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6286 2.1412 0.0004 26 1 2.5641 7.0462 0.4405 27 1 6.2330 0.8161 -0.0032 28 1 7.3353 -1.3603 -0.0020 29 1 6.0173 -3.4343 -0.0002 30 1 3.1683 -4.0412 -1.0262 31 1 3.9282 -4.5064 0.5147 32 1 2.4115 -3.5749 0.5158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040175058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:39 Heat of formation + Delta-G solvation = 34.372667 kcal Electronic energy + Delta-G solvation = -16242.130649 eV Core-core repulsion = 13678.916265 eV Total energy + Delta-G solvation = -2563.214384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20950 -36.93557 -33.60977 -32.91230 -31.52825 -30.63110 -27.75126 -26.21330 -26.00440 -23.31692 -22.16694 -20.74679 -18.13271 -17.67023 -16.23294 -15.88889 -15.42138 -14.46856 -14.35266 -14.22535 -13.64107 -13.18971 -13.12671 -12.77185 -12.51855 -12.29662 -11.95062 -11.84900 -11.66498 -11.41154 -11.18688 -11.16533 -10.86430 -10.78692 -10.36466 -10.15692 -9.30867 -9.16486 -8.70922 -8.19332 -8.03248 -6.96615 -6.66277 -4.42628 0.85118 1.38819 2.44097 2.59876 3.04170 3.13562 3.23938 3.37014 3.94067 4.28045 4.56144 4.69554 4.76645 5.08449 5.12186 5.31058 5.52998 5.54656 5.63870 5.76845 5.86340 5.93353 5.94139 5.99793 6.08880 6.27302 6.40672 6.46000 6.59081 6.65682 6.81403 6.94958 7.04865 7.40968 7.57183 8.17671 8.58797 8.74048 10.40663 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.006857 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.464471 B = 4082.298760 C = 5147.953628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.177 3.823 3 C -0.207 4.207 4 C -0.021 4.021 5 S 0.011 5.989 6 C -0.546 4.546 7 H 0.112 0.888 8 C 0.103 3.897 9 N -0.854 5.854 10 Si 0.853 3.147 11 H -0.261 1.261 12 H -0.266 1.266 13 H -0.238 1.238 14 C -0.101 4.101 15 C -0.084 4.084 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.078 4.078 19 C -0.099 4.099 20 C 0.153 3.847 21 N -0.518 5.518 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.150 0.850 26 H 0.278 0.722 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -12.005 -1.114 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.027 3.973 3 C -0.239 4.239 4 C -0.145 4.145 5 S 0.266 5.734 6 C -0.692 4.692 7 H 0.130 0.870 8 C -0.110 4.110 9 N -0.487 5.487 10 Si 0.677 3.323 11 H -0.186 1.186 12 H -0.190 1.190 13 H -0.162 1.162 14 C -0.109 4.109 15 C -0.104 4.104 16 C -0.158 4.158 17 C -0.128 4.128 18 C -0.079 4.079 19 C -0.156 4.156 20 C 0.029 3.971 21 N -0.232 5.232 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.168 0.832 26 H 0.089 0.911 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.182 -12.121 -1.227 12.881 hybrid contribution -0.193 1.248 -0.003 1.263 sum 3.989 -10.873 -1.230 11.647 Atomic orbital electron populations 1.20714 0.89450 1.03031 1.02707 1.21179 0.96396 0.88190 0.91582 1.22079 0.93781 0.99750 1.08250 1.22835 0.97144 0.97587 0.96886 1.82808 1.14975 0.94717 1.80881 1.22848 0.97077 0.92522 1.56760 0.87035 1.24818 0.97843 0.95608 0.92697 1.69862 1.31714 1.03392 1.43688 0.86830 0.84197 0.80889 0.80373 1.18564 1.19041 1.16249 1.18445 0.94328 0.92517 1.05597 1.20932 0.93077 0.98260 0.98114 1.20680 0.99594 0.92200 1.03332 1.20619 0.93097 0.98161 1.00883 1.19429 0.93406 0.93614 1.01491 1.20576 1.00187 0.92973 1.01880 1.18503 0.89330 0.91739 0.97478 1.67760 1.08019 1.28309 1.19094 0.90684 0.90953 0.90675 0.83224 0.91142 0.85483 0.86229 0.86205 0.91769 0.92411 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.14 36.01 0.37 -1.14 16 2 C 0.18 3.39 6.77 -82.62 -0.56 2.83 16 3 C -0.21 -4.42 8.86 -39.16 -0.35 -4.77 16 4 C -0.02 -0.46 6.18 -38.05 -0.23 -0.70 16 5 S 0.01 0.26 18.19 -107.50 -1.95 -1.69 16 6 C -0.55 -14.43 9.55 30.95 0.30 -14.13 16 7 H 0.11 3.09 5.35 -52.49 -0.28 2.81 16 8 C 0.10 2.72 5.50 -17.46 -0.10 2.62 16 9 N -0.85 -23.56 13.96 55.49 0.77 -22.79 16 10 Si 0.85 19.20 27.74 -169.99 -4.72 14.49 16 11 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.24 -5.18 6.73 56.52 0.38 -4.79 16 14 C -0.10 -2.06 5.76 -106.64 -0.61 -2.67 16 15 C -0.08 -1.49 9.42 -39.58 -0.37 -1.86 16 16 C -0.14 -2.05 9.96 -39.90 -0.40 -2.44 16 17 C -0.11 -1.53 9.58 -39.95 -0.38 -1.91 16 18 C -0.08 -1.26 5.89 -104.49 -0.62 -1.87 16 19 C -0.10 -1.31 9.79 36.00 0.35 -0.96 16 20 C 0.15 2.98 6.59 -84.88 -0.56 2.42 16 21 N -0.52 -10.07 9.29 -7.34 -0.07 -10.14 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 25 H 0.15 3.34 5.24 -52.49 -0.28 3.07 16 26 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.13 2.17 6.95 -52.49 -0.36 1.81 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.07 1.06 7.55 -51.93 -0.39 0.67 16 LS Contribution 284.21 15.07 4.28 4.28 Total: -1.00 -28.49 284.21 -8.27 -36.75 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.42 Total: 3.69 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.17 Total: -24.59 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.71 Total: -32.92 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.72 Total: 14.49 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.95 Total: -1.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.49 -8.27 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.126 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds