Wall clock time and date at job start Mon Mar 30 2020 07:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38786 * 119.05734 * 2 1 4 4 C 1.38831 * 119.65907 * 180.02562 * 3 2 1 5 5 S 1.76207 * 121.07236 * 179.97438 * 4 3 2 6 6 C 1.76198 * 99.99985 * 9.21361 * 5 4 3 7 7 H 1.08002 * 120.00142 * 5.33366 * 6 5 4 8 8 C 1.38814 * 120.00203 * 185.05748 * 6 5 4 9 9 N 1.31540 * 120.00382 * 180.27828 * 8 6 5 10 10 Si 1.86804 * 119.99772 * 0.27470 * 8 6 5 11 11 H 1.48502 * 109.47088 * 90.00187 * 10 8 6 12 12 H 1.48500 * 109.47047 * 209.99799 * 10 8 6 13 13 H 1.48498 * 109.47207 * 330.00297 * 10 8 6 14 14 C 1.41683 * 117.85526 * 0.24842 * 4 3 2 15 15 C 1.40079 * 121.35870 * 180.25822 * 14 4 3 16 16 C 1.36326 * 119.63853 * 179.68896 * 15 14 4 17 17 C 1.39243 * 120.80560 * 359.77812 * 16 15 14 18 18 C 1.36166 * 121.02329 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.12332 * 180.02562 * 18 17 16 20 20 C 1.40559 * 119.75640 * 359.97438 * 18 17 16 21 21 N 1.31295 * 119.06359 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47082 * 89.99924 * 1 2 3 23 23 H 1.09005 * 109.46966 * 209.99692 * 1 2 3 24 24 H 1.09003 * 109.47266 * 330.00028 * 1 2 3 25 25 H 1.08000 * 120.17500 * 0.02562 * 3 2 1 26 26 H 0.96996 * 120.00269 * 180.02562 * 9 8 6 27 27 H 1.07999 * 120.18207 * 359.42818 * 15 14 4 28 28 H 1.07994 * 119.59941 * 179.76519 * 16 15 14 29 29 H 1.07994 * 119.48624 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46742 * 269.97591 * 19 18 17 31 31 H 1.08996 * 109.47217 * 29.96816 * 19 18 17 32 32 H 1.08994 * 109.47490 * 149.97518 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.2132 0.0000 4 6 3.5693 1.2278 -0.0005 5 16 4.4628 2.7465 -0.0012 6 6 3.1418 3.8788 0.2769 7 1 2.1464 3.5093 0.4742 8 6 3.3817 5.2458 0.2480 9 7 2.3966 6.0911 0.4610 10 14 5.1035 5.8849 -0.0933 11 1 5.2804 6.0744 -1.5555 12 1 5.2961 7.1834 0.6009 13 1 6.1027 4.9050 0.4033 14 6 4.2444 -0.0179 -0.0065 15 6 5.6434 -0.0888 -0.0020 16 6 6.2567 -1.3063 -0.0016 17 6 5.5094 -2.4812 -0.0009 18 6 4.1482 -2.4471 -0.0001 19 6 3.3595 -3.7312 0.0012 20 6 3.4813 -1.2098 0.0005 21 7 2.1448 -1.1476 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6286 2.1412 0.0004 26 1 2.5641 7.0462 0.4405 27 1 6.2330 0.8161 -0.0032 28 1 7.3353 -1.3603 -0.0020 29 1 6.0173 -3.4343 -0.0002 30 1 3.1683 -4.0412 -1.0262 31 1 3.9282 -4.5064 0.5147 32 1 2.4115 -3.5749 0.5158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040175058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:38 Heat of formation + Delta-G solvation = 18.755617 kcal Electronic energy + Delta-G solvation = -16242.807855 eV Core-core repulsion = 13678.916265 eV Total energy + Delta-G solvation = -2563.891590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.64391 -38.30428 -34.99232 -34.90470 -32.86850 -32.07000 -29.09773 -27.94557 -27.41241 -24.80685 -23.61216 -22.11716 -19.97595 -19.05712 -17.70180 -17.40319 -17.29108 -16.06811 -15.76917 -15.61576 -15.12022 -14.64554 -14.32936 -14.30677 -13.85751 -13.56696 -13.48044 -13.18749 -13.12024 -13.06823 -12.89184 -12.40842 -12.16094 -12.14594 -11.96259 -11.85481 -11.19255 -11.06110 -10.28852 -9.61648 -9.52086 -8.65617 -8.63052 -6.43610 -0.58312 -0.05452 0.85531 0.98200 1.25564 1.34832 1.48829 2.00789 2.09454 2.36690 2.73982 3.13933 3.34066 3.74580 3.81824 4.01334 4.18808 4.26138 4.41410 4.50247 4.57390 4.74335 4.75691 4.90966 4.92152 5.00881 5.05532 5.07187 5.25769 5.38578 5.54406 5.58560 5.59257 5.69369 6.05366 6.10129 6.73432 7.04957 8.45635 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.006857 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.464471 B = 4082.298760 C = 5147.953628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.164 3.836 3 C -0.220 4.220 4 C -0.041 4.041 5 S 0.008 5.992 6 C -0.566 4.566 7 H 0.081 0.919 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.910 3.090 11 H -0.255 1.255 12 H -0.254 1.254 13 H -0.227 1.227 14 C -0.119 4.119 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.095 4.095 18 C -0.086 4.086 19 C -0.096 4.096 20 C 0.123 3.877 21 N -0.510 5.510 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.130 0.870 26 H 0.283 0.717 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -15.185 -1.408 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.013 3.987 3 C -0.251 4.251 4 C -0.164 4.164 5 S 0.260 5.740 6 C -0.713 4.713 7 H 0.099 0.901 8 C -0.154 4.154 9 N -0.534 5.534 10 Si 0.730 3.270 11 H -0.179 1.179 12 H -0.178 1.178 13 H -0.150 1.150 14 C -0.126 4.126 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.115 4.115 18 C -0.087 4.087 19 C -0.153 4.153 20 C 0.000 4.000 21 N -0.223 5.223 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.147 0.853 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.462 -15.359 -1.519 16.733 hybrid contribution -0.909 1.875 0.092 2.086 sum 5.553 -13.484 -1.427 14.652 Atomic orbital electron populations 1.20769 0.86559 1.03986 1.04017 1.21669 0.98335 0.87271 0.91448 1.22122 0.93994 1.00057 1.08917 1.23015 0.97520 0.97903 0.97918 1.82350 1.13702 0.94614 1.83349 1.22971 0.97230 0.93845 1.57212 0.90095 1.25682 1.01788 0.95643 0.92294 1.69953 1.33950 1.03909 1.45545 0.85975 0.79584 0.80824 0.80585 1.17913 1.17773 1.15019 1.18711 0.95858 0.91865 1.06163 1.21065 0.91968 0.99904 1.00390 1.21213 1.01768 0.91012 0.99135 1.21176 0.92309 0.99957 0.98038 1.19900 0.94709 0.93371 1.00721 1.20625 0.99613 0.92242 1.02792 1.19076 0.89453 0.92995 0.98466 1.67857 1.08498 1.27954 1.17969 0.89074 0.89216 0.90439 0.85286 0.90705 0.85613 0.82142 0.81487 0.90744 0.89131 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.83 10.14 71.24 0.72 -2.11 16 2 C 0.16 6.40 6.77 42.77 0.29 6.69 16 3 C -0.22 -9.94 8.86 22.54 0.20 -9.74 16 4 C -0.04 -1.87 6.18 23.26 0.14 -1.73 16 5 S 0.01 0.38 18.19 -56.49 -1.03 -0.65 16 6 C -0.57 -31.70 9.55 67.96 0.65 -31.05 16 7 H 0.08 4.89 5.35 -2.91 -0.02 4.87 16 8 C 0.05 2.97 5.50 84.87 0.47 3.44 16 9 N -0.90 -51.92 13.96 21.65 0.30 -51.62 16 10 Si 0.91 40.23 27.74 68.60 1.90 42.13 16 11 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 12 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 13 H -0.23 -9.49 6.73 99.48 0.67 -8.82 16 14 C -0.12 -4.81 5.76 -21.17 -0.12 -4.93 16 15 C -0.11 -3.84 9.42 22.27 0.21 -3.63 16 16 C -0.11 -2.82 9.96 22.07 0.22 -2.60 16 17 C -0.10 -2.20 9.58 22.03 0.21 -1.99 16 18 C -0.09 -2.47 5.89 -19.78 -0.12 -2.58 16 19 C -0.10 -2.15 9.79 71.23 0.70 -1.45 16 20 C 0.12 4.65 6.59 40.22 0.26 4.91 16 21 N -0.51 -19.55 9.29 -177.13 -1.65 -21.19 16 22 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 24 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 25 H 0.13 6.31 5.24 -2.91 -0.02 6.30 16 26 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 27 H 0.13 4.19 6.95 -2.91 -0.02 4.17 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 32 H 0.06 1.55 7.55 -2.39 -0.02 1.53 16 Total: -1.00 -65.52 284.21 4.47 -61.05 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.10 Total: 17.03 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.84 Total: -46.75 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.34 Total: -72.81 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.90 Total: 42.13 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.03 Total: -0.65 kcal Total: -65.52 4.47 -61.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.806 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds