Wall clock time and date at job start Mon Mar 30 2020 07:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39300 * 119.56773 * 2 1 4 4 C 1.36141 * 121.02676 * 179.97438 * 3 2 1 5 5 C 1.40589 * 119.75854 * 359.97438 * 4 3 2 6 6 N 1.33702 * 120.97926 * 180.02562 * 5 4 3 7 7 C 1.31861 * 121.24156 * 179.97438 * 6 5 4 8 8 S 1.76193 * 119.23739 * 180.02562 * 7 6 5 9 9 C 1.76200 * 99.99857 * 359.97066 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00154 * 179.97438 * 9 8 7 12 12 N 1.31549 * 119.99596 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47244 * 90.00156 * 13 11 9 15 15 H 1.48503 * 109.47108 * 210.00161 * 13 11 9 16 16 H 1.48505 * 109.47324 * 329.99944 * 13 11 9 17 17 C 1.40288 * 121.52759 * 359.97438 * 7 6 5 18 18 C 1.36215 * 119.87359 * 0.02562 * 17 7 6 19 19 C 1.50697 * 120.85109 * 179.72358 * 18 17 7 20 20 C 1.41041 * 118.28994 * 359.97438 * 18 17 7 21 21 C 1.36236 * 119.57352 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46928 * 89.99620 * 1 2 3 23 23 H 1.08993 * 109.47680 * 209.99715 * 1 2 3 24 24 H 1.09000 * 109.47668 * 329.99945 * 1 2 3 25 25 H 1.07991 * 119.48615 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.11663 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99788 * 179.97438 * 12 11 9 28 28 H 1.08005 * 120.06595 * 180.02562 * 17 7 6 29 29 H 1.08998 * 109.47061 * 90.00295 * 19 18 17 30 30 H 1.08994 * 109.47168 * 209.99795 * 19 18 17 31 31 H 1.08996 * 109.47142 * 329.99939 * 19 18 17 32 32 H 1.08005 * 120.17114 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.2116 0.0000 4 6 3.5553 1.2463 0.0005 5 6 4.2839 0.0439 0.0016 6 7 5.6210 0.0495 0.0027 7 6 6.3095 -1.0750 0.0042 8 16 8.0701 -1.0061 0.0062 9 6 8.3079 0.7398 0.0045 10 1 7.4541 1.4011 0.0031 11 6 9.5927 1.2653 0.0059 12 7 10.6327 0.4598 0.0081 13 14 9.8448 3.1162 0.0048 14 1 9.9096 3.6078 1.4045 15 1 11.1140 3.4425 -0.6937 16 1 8.7112 3.7698 -0.6975 17 6 5.6728 -2.3251 0.0053 18 6 4.3124 -2.3936 0.0043 19 6 3.6056 -3.7245 -0.0007 20 6 3.5824 -1.1868 0.0027 21 6 2.1793 -1.1849 0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6390 2.1378 0.0004 26 1 4.0732 2.1939 0.0001 27 1 11.5306 0.8270 0.0087 28 1 6.2601 -3.2315 0.0070 29 1 3.4346 -4.0490 1.0257 30 1 2.6495 -3.6262 -0.5147 31 1 4.2215 -4.4610 -0.5168 32 1 1.6351 -2.1178 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040175170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:28 Heat of formation + Delta-G solvation = 29.966364 kcal Electronic energy + Delta-G solvation = -16049.234182 eV Core-core repulsion = 13485.828726 eV Total energy + Delta-G solvation = -2563.405456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19332 -36.88402 -34.12623 -32.68119 -31.63337 -29.93650 -27.88744 -26.49362 -25.49793 -23.19444 -22.28500 -20.59976 -18.27350 -17.06232 -16.55666 -15.97371 -14.93245 -14.53647 -14.23016 -13.97639 -13.71924 -13.35906 -13.26740 -12.92494 -12.71509 -12.42963 -12.14432 -11.88934 -11.37297 -11.23182 -11.09092 -11.01431 -10.98903 -10.71264 -10.06014 -9.68285 -9.32959 -8.86742 -8.52343 -8.43672 -7.80701 -6.67952 -6.47577 -4.15205 0.91986 1.38864 2.53496 3.04362 3.16843 3.22800 3.32672 3.34709 4.01354 4.64956 4.83902 4.96567 4.99053 5.06015 5.11042 5.24406 5.37416 5.41257 5.60320 5.64682 5.67643 5.70061 5.81635 5.87495 5.93035 6.03690 6.30327 6.40361 6.53098 6.61854 6.81119 6.92050 7.07037 7.39251 7.58995 8.44525 8.74467 9.05530 10.60275 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.005981 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.928036 B = 4680.205867 C = 5751.687176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.104 4.104 5 C 0.159 3.841 6 N -0.493 5.493 7 C 0.127 3.873 8 S 0.111 5.889 9 C -0.529 4.529 10 H 0.110 0.890 11 C 0.072 3.928 12 N -0.873 5.873 13 Si 0.929 3.071 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.160 4.160 18 C -0.033 4.033 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.085 4.085 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.274 0.726 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 -4.180 -0.008 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.125 4.125 5 C 0.031 3.969 6 N -0.210 5.210 7 C -0.133 4.133 8 S 0.363 5.637 9 C -0.677 4.677 10 H 0.128 0.872 11 C -0.137 4.137 12 N -0.507 5.507 13 Si 0.755 3.245 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.185 4.185 18 C -0.042 4.042 19 C -0.168 4.168 20 C -0.140 4.140 21 C -0.104 4.104 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.400 -4.236 -0.010 14.054 hybrid contribution -1.011 1.286 0.012 1.636 sum -14.411 -2.950 0.002 14.710 Atomic orbital electron populations 1.20701 0.91719 1.02140 1.01680 1.19405 0.95641 0.93163 1.04332 1.20608 0.93890 0.97175 1.00269 1.20723 0.93329 0.97090 1.01347 1.19024 0.90237 0.92168 0.95459 1.68688 1.05314 1.27996 1.19032 1.24392 1.03557 0.90183 0.95126 1.83459 0.87866 1.12432 1.79988 1.23471 0.96246 0.91085 1.56932 0.87208 1.25185 0.94708 1.00297 0.93512 1.69950 0.98920 1.35689 1.46172 0.85972 0.77909 0.81984 0.78657 1.19976 1.20698 1.19095 1.21360 0.94233 0.97977 1.04963 1.19863 0.93453 0.94428 0.96460 1.20767 1.00294 0.93321 1.02405 1.18492 0.94056 0.93608 1.07828 1.20689 0.92548 0.97373 0.99756 0.91839 0.92112 0.92008 0.86378 0.85418 0.91668 0.85194 0.90908 0.91342 0.91166 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.98 36.00 0.36 -0.69 16 2 C -0.12 -1.69 5.85 -104.95 -0.61 -2.31 16 3 C -0.10 -1.47 9.58 -39.94 -0.38 -1.85 16 4 C -0.10 -1.88 9.98 -39.45 -0.39 -2.27 16 5 C 0.16 3.32 6.60 -84.86 -0.56 2.76 16 6 N -0.49 -11.83 8.37 -9.78 -0.08 -11.91 16 7 C 0.13 2.95 6.97 -16.77 -0.12 2.84 16 8 S 0.11 2.83 21.62 -107.50 -2.32 0.51 16 9 C -0.53 -14.94 9.24 30.95 0.29 -14.65 16 10 H 0.11 3.16 6.51 -52.49 -0.34 2.82 16 11 C 0.07 1.99 5.49 -17.46 -0.10 1.89 16 12 N -0.87 -24.70 13.22 55.49 0.73 -23.97 16 13 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 C -0.16 -3.07 9.43 -39.54 -0.37 -3.44 16 18 C -0.03 -0.55 5.92 -104.29 -0.62 -1.17 16 19 C -0.11 -1.32 9.59 36.00 0.35 -0.98 16 20 C -0.13 -2.41 5.75 -106.75 -0.61 -3.02 16 21 C -0.08 -1.25 8.91 -39.53 -0.35 -1.60 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.12 1.42 6.43 -52.48 -0.34 1.08 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.82 289.85 -8.98 -39.80 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.53 Total: -0.64 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.13 Total: -24.50 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.65 Total: -35.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.32 Total: 0.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.82 -8.98 -39.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.767 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds