Wall clock time and date at job start Mon Mar 30 2020 07:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39300 * 119.56773 * 2 1 4 4 C 1.36141 * 121.02676 * 179.97438 * 3 2 1 5 5 C 1.40589 * 119.75854 * 359.97438 * 4 3 2 6 6 N 1.33702 * 120.97926 * 180.02562 * 5 4 3 7 7 C 1.31861 * 121.24156 * 179.97438 * 6 5 4 8 8 S 1.76193 * 119.23739 * 180.02562 * 7 6 5 9 9 C 1.76200 * 99.99857 * 359.97066 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00154 * 179.97438 * 9 8 7 12 12 N 1.31549 * 119.99596 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47244 * 90.00156 * 13 11 9 15 15 H 1.48503 * 109.47108 * 210.00161 * 13 11 9 16 16 H 1.48505 * 109.47324 * 329.99944 * 13 11 9 17 17 C 1.40288 * 121.52759 * 359.97438 * 7 6 5 18 18 C 1.36215 * 119.87359 * 0.02562 * 17 7 6 19 19 C 1.50697 * 120.85109 * 179.72358 * 18 17 7 20 20 C 1.41041 * 118.28994 * 359.97438 * 18 17 7 21 21 C 1.36236 * 119.57352 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.46928 * 89.99620 * 1 2 3 23 23 H 1.08993 * 109.47680 * 209.99715 * 1 2 3 24 24 H 1.09000 * 109.47668 * 329.99945 * 1 2 3 25 25 H 1.07991 * 119.48615 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.11663 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99788 * 179.97438 * 12 11 9 28 28 H 1.08005 * 120.06595 * 180.02562 * 17 7 6 29 29 H 1.08998 * 109.47061 * 90.00295 * 19 18 17 30 30 H 1.08994 * 109.47168 * 209.99795 * 19 18 17 31 31 H 1.08996 * 109.47142 * 329.99939 * 19 18 17 32 32 H 1.08005 * 120.17114 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.2116 0.0000 4 6 3.5553 1.2463 0.0005 5 6 4.2839 0.0439 0.0016 6 7 5.6210 0.0495 0.0027 7 6 6.3095 -1.0750 0.0042 8 16 8.0701 -1.0061 0.0062 9 6 8.3079 0.7398 0.0045 10 1 7.4541 1.4011 0.0031 11 6 9.5927 1.2653 0.0059 12 7 10.6327 0.4598 0.0081 13 14 9.8448 3.1162 0.0048 14 1 9.9096 3.6078 1.4045 15 1 11.1140 3.4425 -0.6937 16 1 8.7112 3.7698 -0.6975 17 6 5.6728 -2.3251 0.0053 18 6 4.3124 -2.3936 0.0043 19 6 3.6056 -3.7245 -0.0007 20 6 3.5824 -1.1868 0.0027 21 6 2.1793 -1.1849 0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6390 2.1378 0.0004 26 1 4.0732 2.1939 0.0001 27 1 11.5306 0.8270 0.0087 28 1 6.2601 -3.2315 0.0070 29 1 3.4346 -4.0490 1.0257 30 1 2.6495 -3.6262 -0.5147 31 1 4.2215 -4.4610 -0.5168 32 1 1.6351 -2.1178 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040175170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:27 Heat of formation + Delta-G solvation = 12.053767 kcal Electronic energy + Delta-G solvation = -16050.010930 eV Core-core repulsion = 13485.828726 eV Total energy + Delta-G solvation = -2564.182204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.62710 -38.23311 -35.52133 -34.73709 -32.87121 -31.27591 -29.07760 -28.03541 -27.20353 -24.53218 -23.66613 -21.95916 -20.07834 -18.57832 -18.01732 -17.44617 -16.95913 -16.06766 -15.60033 -15.23747 -14.99438 -14.94505 -14.23527 -14.22263 -13.87675 -13.82109 -13.38418 -13.02668 -13.01187 -12.88335 -12.77810 -12.36943 -12.25132 -12.19530 -11.80338 -11.27038 -11.01610 -10.87294 -10.14323 -9.95958 -9.20092 -8.51348 -8.50092 -6.25915 -0.45252 -0.04894 1.13804 1.22226 1.35017 1.37611 1.51490 1.96772 2.12499 2.88344 3.05791 3.20855 3.62498 3.74234 3.95323 3.98593 4.12046 4.28981 4.37348 4.50482 4.60273 4.74376 4.82222 4.87540 4.95699 5.03447 5.15449 5.23419 5.24439 5.32660 5.48204 5.50111 5.67210 5.75929 6.08022 6.28543 6.96204 7.13760 8.58479 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.005981 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.928036 B = 4680.205867 C = 5751.687176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.108 4.108 3 C -0.083 4.083 4 C -0.134 4.134 5 C 0.114 3.886 6 N -0.531 5.531 7 C 0.119 3.881 8 S 0.043 5.957 9 C -0.551 4.551 10 H 0.090 0.910 11 C 0.024 3.976 12 N -0.906 5.906 13 Si 0.994 3.006 14 H -0.266 1.266 15 H -0.266 1.266 16 H -0.270 1.270 17 C -0.183 4.183 18 C -0.015 4.015 19 C -0.108 4.108 20 C -0.141 4.141 21 C -0.085 4.085 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.116 0.884 27 H 0.278 0.722 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.816 -4.828 0.015 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.154 4.154 5 C -0.012 4.012 6 N -0.248 5.248 7 C -0.141 4.141 8 S 0.291 5.709 9 C -0.699 4.699 10 H 0.108 0.892 11 C -0.181 4.181 12 N -0.542 5.542 13 Si 0.816 3.184 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.195 1.195 17 C -0.208 4.208 18 C -0.024 4.024 19 C -0.165 4.165 20 C -0.146 4.146 21 C -0.104 4.104 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.171 0.829 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.152 -4.874 0.014 18.795 hybrid contribution -0.110 1.464 0.005 1.468 sum -18.262 -3.410 0.018 18.577 Atomic orbital electron populations 1.20812 0.87948 1.04040 1.03313 1.20013 0.98230 0.92156 1.00607 1.21074 0.92467 0.99538 0.97128 1.20853 0.94995 0.95997 1.03590 1.19509 0.89408 0.94653 0.97622 1.68513 1.07601 1.29275 1.19361 1.24255 1.01824 0.91834 0.96234 1.83222 0.91701 1.11630 1.84306 1.23483 0.96161 0.92067 1.58223 0.89150 1.26058 0.94190 1.04853 0.93033 1.70036 0.99266 1.37424 1.47429 0.85014 0.78022 0.76372 0.78985 1.19107 1.19063 1.19498 1.21526 0.95679 0.96903 1.06712 1.20503 0.92572 0.96654 0.92690 1.20930 1.00985 0.90211 1.04339 1.18898 0.96005 0.92894 1.06833 1.21130 0.90826 0.99719 0.98702 0.90110 0.90077 0.90468 0.82901 0.86598 0.91291 0.83355 0.88702 0.88819 0.89611 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.98 71.23 0.71 -0.67 16 2 C -0.11 -2.44 5.85 -20.08 -0.12 -2.56 16 3 C -0.08 -2.17 9.58 22.04 0.21 -1.96 16 4 C -0.13 -4.85 9.98 22.36 0.22 -4.62 16 5 C 0.11 4.85 6.60 40.28 0.27 5.12 16 6 N -0.53 -27.04 8.37 -184.87 -1.55 -28.59 16 7 C 0.12 5.87 6.97 85.19 0.59 6.47 16 8 S 0.04 2.40 21.62 -56.49 -1.22 1.18 16 9 C -0.55 -33.44 9.24 67.96 0.63 -32.81 16 10 H 0.09 5.65 6.51 -2.91 -0.02 5.63 16 11 C 0.02 1.39 5.49 84.87 0.47 1.86 16 12 N -0.91 -53.90 13.22 21.65 0.29 -53.61 16 13 Si 0.99 45.78 29.55 68.60 2.03 47.80 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 C -0.18 -7.12 9.43 22.30 0.21 -6.91 16 18 C -0.01 -0.47 5.92 -19.65 -0.12 -0.58 16 19 C -0.11 -2.07 9.59 71.23 0.68 -1.39 16 20 C -0.14 -4.82 5.75 -21.24 -0.12 -4.94 16 21 C -0.09 -2.11 8.91 22.31 0.20 -1.92 16 22 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.08 0.83 8.07 -2.39 -0.02 0.81 16 24 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 25 H 0.15 2.93 8.06 -2.92 -0.02 2.91 16 26 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 27 H 0.28 15.24 8.31 -92.70 -0.77 14.46 16 28 H 0.15 5.02 8.06 -2.91 -0.02 4.99 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.35 6.51 -2.39 -0.02 1.34 16 31 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.16 2.67 6.43 -2.91 -0.02 2.65 16 Total: -1.00 -74.43 289.85 4.51 -69.92 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.13 Total: 8.21 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.84 Total: -44.91 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.26 Total: -82.20 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.22 Total: 1.18 kcal Total: -74.43 4.51 -69.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.974 kcal (2) G-P(sol) polarization free energy of solvation -74.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds