Wall clock time and date at job start Mon Mar 30 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39244 * 119.48320 * 2 1 4 4 C 1.36314 * 120.80102 * 179.69675 * 3 2 1 5 5 C 1.40075 * 119.63955 * 0.02921 * 4 3 2 6 6 C 1.41693 * 121.35282 * 180.02562 * 5 4 3 7 7 S 1.76200 * 121.07171 * 359.95466 * 6 5 4 8 8 C 1.76198 * 99.99828 * 187.16585 * 7 6 5 9 9 H 1.07996 * 120.00118 * 357.13617 * 8 7 6 10 10 C 1.38815 * 119.99785 * 177.14412 * 8 7 6 11 11 N 1.31534 * 120.00409 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00073 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46665 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47233 * 119.99552 * 12 10 8 15 15 H 1.48494 * 109.47154 * 239.99837 * 12 10 8 16 16 C 1.38827 * 117.85446 * 179.97438 * 6 5 4 17 17 C 1.38792 * 119.65657 * 359.97438 * 16 6 5 18 18 N 1.31301 * 121.88293 * 0.02562 * 17 16 6 19 19 C 1.33799 * 121.72286 * 359.95480 * 18 17 16 20 20 C 1.36164 * 119.48622 * 179.73039 * 2 1 3 21 21 C 1.50696 * 120.12355 * 0.27110 * 20 2 1 22 22 H 1.09003 * 109.46867 * 95.75137 * 1 2 3 23 23 H 1.09007 * 109.46851 * 215.74972 * 1 2 3 24 24 H 1.08995 * 109.47017 * 335.74628 * 1 2 3 25 25 H 1.07994 * 119.59758 * 359.72829 * 3 2 1 26 26 H 1.07998 * 120.18166 * 180.02562 * 4 3 2 27 27 H 0.96998 * 120.00383 * 180.02562 * 11 10 8 28 28 H 1.07996 * 120.17495 * 180.02562 * 16 6 5 29 29 H 1.08007 * 119.05609 * 179.97438 * 17 16 6 30 30 H 1.09003 * 109.46932 * 84.00526 * 21 20 2 31 31 H 1.09000 * 109.47274 * 204.00189 * 21 20 2 32 32 H 1.09000 * 109.47360 * 324.00626 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1924 1.2121 0.0000 4 6 3.5551 1.2435 0.0062 5 6 4.2757 0.0423 0.0120 6 6 5.6925 0.0325 0.0191 7 16 6.6123 1.5354 0.0197 8 6 8.2415 0.8970 -0.1870 9 1 8.4027 -0.1702 -0.2235 10 6 9.3179 1.7659 -0.3026 11 7 9.1216 3.0658 -0.2584 12 14 11.0452 1.0892 -0.5224 13 1 10.9967 -0.3949 -0.5405 14 1 11.6105 1.5821 -1.8041 15 1 11.9013 1.5424 0.6030 16 6 6.3327 -1.1994 0.0251 17 6 5.5791 -2.3649 0.0246 18 7 4.2663 -2.3419 0.0180 19 6 3.5828 -1.1917 0.0124 20 6 2.1773 -1.1853 0.0056 21 6 1.4149 -2.4852 0.0055 22 1 -0.3633 -0.1030 -1.0225 23 1 -0.3633 -0.8341 0.6005 24 1 -0.3633 0.9369 0.4221 25 1 1.6375 2.1386 -0.0045 26 1 4.0765 2.1893 0.0066 27 1 9.8737 3.6729 -0.3396 28 1 7.4114 -1.2505 0.0310 29 1 6.0872 -3.3180 0.0289 30 1 1.1428 -2.7467 -1.0171 31 1 2.0392 -3.2725 0.4280 32 1 0.5114 -2.3766 0.6055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040175293.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:33 Heat of formation + Delta-G solvation = 34.299436 kcal Electronic energy + Delta-G solvation = -16148.022115 eV Core-core repulsion = 13584.804555 eV Total energy + Delta-G solvation = -2563.217559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13976 -36.99681 -33.68767 -32.95827 -31.40190 -30.49379 -27.53601 -26.37412 -25.63461 -23.34686 -22.10886 -20.52710 -18.20775 -17.47978 -16.37610 -15.84761 -15.22619 -14.63290 -14.36165 -13.84212 -13.67357 -13.33380 -13.10634 -12.85748 -12.48095 -12.44765 -12.06801 -11.65089 -11.35793 -11.27559 -11.17042 -10.88777 -10.87087 -10.62203 -10.27583 -10.27106 -9.32812 -9.00394 -8.58273 -8.10924 -7.87324 -6.73061 -6.69204 -4.41077 0.95910 1.47571 2.53634 2.90564 3.02154 3.10313 3.20033 3.45677 3.84814 4.66167 4.78564 4.82093 4.85691 5.12244 5.20679 5.35623 5.46187 5.56161 5.64935 5.72053 5.86034 5.90552 5.98390 6.02724 6.15149 6.22210 6.38744 6.54660 6.66989 6.71528 6.95895 7.02486 7.14557 7.30702 7.51884 7.99171 8.67104 8.79224 10.37046 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.005551 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.282461 B = 5042.793347 C = 5776.658586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.079 4.079 5 C -0.104 4.104 6 C -0.043 4.043 7 S 0.107 5.893 8 C -0.560 4.560 9 H 0.099 0.901 10 C 0.081 3.919 11 N -0.858 5.858 12 Si 0.929 3.071 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.275 1.275 16 C -0.229 4.229 17 C 0.152 3.848 18 N -0.527 5.527 19 C 0.155 3.845 20 C -0.083 4.083 21 C -0.101 4.101 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.277 0.723 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -4.909 0.394 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.111 4.111 6 C -0.168 4.168 7 S 0.365 5.635 8 C -0.707 4.707 9 H 0.117 0.883 10 C -0.131 4.131 11 N -0.491 5.491 12 Si 0.753 3.247 13 H -0.189 1.189 14 H -0.200 1.200 15 H -0.201 1.201 16 C -0.262 4.262 17 C -0.017 4.017 18 N -0.241 5.241 19 C 0.031 3.969 20 C -0.085 4.085 21 C -0.158 4.158 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.182 -4.056 0.492 11.905 hybrid contribution 2.173 -0.733 -0.273 2.309 sum -9.009 -4.789 0.220 10.205 Atomic orbital electron populations 1.20826 0.91556 1.02419 1.02024 1.19348 0.95717 0.92503 1.00335 1.20572 0.94012 0.97046 1.04135 1.20943 0.94084 0.97277 0.97603 1.18423 0.92260 0.94559 1.05893 1.23407 0.95604 1.01657 0.96117 1.83319 1.00880 1.01165 1.78141 1.23571 0.91546 0.97009 1.58587 0.88319 1.25159 1.00474 0.94538 0.92921 1.69940 1.33195 1.01976 1.43969 0.85934 0.80755 0.79606 0.78368 1.18904 1.20047 1.20057 1.22085 1.01919 0.92068 1.10175 1.22547 0.89592 0.97574 0.92037 1.67929 1.08932 1.27886 1.19322 1.18510 0.93083 0.88174 0.97103 1.19197 0.91148 0.95213 1.02893 1.20621 0.98841 0.94854 1.01468 0.91425 0.91379 0.91889 0.86286 0.85319 0.91290 0.83974 0.83818 0.91934 0.90664 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.46 36.01 0.34 -0.88 16 2 C -0.08 -1.16 5.84 -104.99 -0.61 -1.77 16 3 C -0.14 -2.18 9.57 -39.90 -0.38 -2.56 16 4 C -0.08 -1.48 9.42 -39.59 -0.37 -1.85 16 5 C -0.10 -2.17 5.76 -106.64 -0.61 -2.79 16 6 C -0.04 -0.97 6.18 -38.05 -0.24 -1.21 16 7 S 0.11 2.61 20.22 -107.50 -2.17 0.44 16 8 C -0.56 -14.52 9.10 30.95 0.28 -14.24 16 9 H 0.10 2.45 4.92 -52.49 -0.26 2.20 16 10 C 0.08 2.07 5.49 -17.47 -0.10 1.97 16 11 N -0.86 -23.06 13.22 55.49 0.73 -22.33 16 12 Si 0.93 19.63 29.55 -169.99 -5.02 14.60 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 16 C -0.23 -4.84 9.31 -39.16 -0.36 -5.21 16 17 C 0.15 2.87 11.13 -17.57 -0.20 2.68 16 18 N -0.53 -10.41 9.30 -11.09 -0.10 -10.51 16 19 C 0.15 3.09 6.59 -84.88 -0.56 2.53 16 20 C -0.08 -1.39 5.89 -104.50 -0.62 -2.01 16 21 C -0.10 -1.39 9.31 36.00 0.34 -1.06 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 24 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 25 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 26 H 0.13 2.36 6.95 -52.49 -0.36 1.99 16 27 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.14 3.00 5.10 -52.49 -0.27 2.73 16 29 H 0.14 2.19 8.06 -52.48 -0.42 1.76 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.11 7.38 -51.93 -0.38 0.72 16 32 H 0.06 0.68 6.20 -51.93 -0.32 0.36 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -28.54 282.12 -8.56 -37.11 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.16 Total: 2.82 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -3.09 Total: -26.38 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.63 Total: -32.85 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.17 Total: 0.44 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.54 -8.56 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175293.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.407 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds