Wall clock time and date at job start Mon Mar 30 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39240 * 119.59524 * 2 1 4 4 C 1.36159 * 121.02049 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.11981 * 180.02562 * 4 3 2 6 6 C 1.40561 * 119.75549 * 0.27120 * 4 3 2 7 7 N 1.33796 * 120.97540 * 179.72435 * 6 4 3 8 8 C 1.31303 * 121.72610 * 179.97438 * 7 6 4 9 9 C 1.38786 * 121.87041 * 0.02562 * 8 7 6 10 10 C 1.38843 * 119.66730 * 359.46584 * 9 8 7 11 11 S 1.76198 * 121.07387 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99800 * 351.20499 * 11 10 9 13 13 H 1.07994 * 120.00496 * 354.59405 * 12 11 10 14 14 C 1.38821 * 119.99726 * 174.58578 * 12 11 10 15 15 N 1.31541 * 120.00306 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46963 * 89.99592 * 16 14 12 18 18 H 1.48500 * 109.46880 * 209.99949 * 16 14 12 19 19 H 1.48492 * 109.47060 * 329.99431 * 16 14 12 20 20 C 1.41526 * 119.05018 * 359.46423 * 6 4 3 21 21 C 1.36320 * 119.59470 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47395 * 89.99707 * 1 2 3 23 23 H 1.09007 * 109.46707 * 210.00213 * 1 2 3 24 24 H 1.09000 * 109.47053 * 329.99311 * 1 2 3 25 25 H 1.08003 * 119.48528 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.47135 * 89.99886 * 5 4 3 27 27 H 1.08995 * 109.47401 * 329.99967 * 5 4 3 28 28 H 1.09000 * 109.46747 * 209.99346 * 5 4 3 29 29 H 1.07996 * 119.06331 * 179.97438 * 8 7 6 30 30 H 1.08009 * 120.16355 * 179.97438 * 9 8 7 31 31 H 0.96992 * 120.00257 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.18474 * 359.94164 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1947 1.2107 0.0000 4 6 3.5559 1.2446 -0.0005 5 6 4.2795 2.5666 0.0001 6 6 4.2836 0.0421 -0.0068 7 7 5.6216 0.0469 -0.0130 8 6 6.3160 -1.0674 -0.0185 9 6 5.7033 -2.3127 -0.0187 10 6 4.3176 -2.3968 -0.0017 11 16 3.5011 -3.9582 -0.0007 12 6 4.8755 -5.0223 -0.2896 13 1 5.8498 -4.6029 -0.4925 14 6 4.7060 -6.3997 -0.2563 15 7 5.7320 -7.1941 -0.4715 16 14 3.0205 -7.1250 0.0942 17 1 2.2881 -7.3151 -1.1835 18 1 3.1775 -8.4356 0.7746 19 1 2.2564 -6.2010 0.9701 20 6 3.5810 -1.1864 -0.0010 21 6 2.1803 -1.1854 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6398 2.1373 0.0004 26 1 4.4543 2.8846 1.0279 27 1 3.6731 3.3129 -0.5130 28 1 5.2344 2.4582 -0.5141 29 1 7.3946 -1.0134 -0.0238 30 1 6.3017 -3.2120 -0.0237 31 1 5.6136 -8.1565 -0.4478 32 1 1.6367 -2.1186 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040175294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:31 Heat of formation + Delta-G solvation = 33.330596 kcal Electronic energy + Delta-G solvation = -16177.223566 eV Core-core repulsion = 13613.963995 eV Total energy + Delta-G solvation = -2563.259571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22617 -36.99317 -33.83256 -32.91476 -31.72028 -30.44038 -27.29717 -26.49904 -25.94095 -23.50803 -22.24776 -20.53903 -18.26303 -17.63103 -16.59023 -15.68698 -15.39832 -14.55188 -14.28279 -13.95572 -13.67769 -13.24751 -13.15539 -13.01229 -12.71615 -12.47609 -12.28358 -11.73617 -11.69105 -11.41087 -11.20343 -11.12479 -10.79466 -10.76900 -10.31588 -10.19532 -9.33401 -9.14456 -8.71853 -8.22789 -8.02580 -6.94412 -6.66237 -4.42543 0.84049 1.37668 2.43205 2.60338 3.03564 3.14174 3.23483 3.35037 3.94099 4.28124 4.58267 4.76824 4.80024 5.01038 5.05728 5.20303 5.46105 5.52956 5.68036 5.71555 5.72153 5.81232 5.89567 5.97937 6.07254 6.15040 6.26751 6.41495 6.59596 6.68805 6.81081 6.94708 7.04177 7.39804 7.57042 8.17392 8.56093 8.73754 10.40597 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.006622 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.506774 B = 4227.495311 C = 5263.214740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.072 4.072 5 C -0.100 4.100 6 C 0.144 3.856 7 N -0.517 5.517 8 C 0.149 3.851 9 C -0.211 4.211 10 C -0.023 4.023 11 S 0.011 5.989 12 C -0.545 4.545 13 H 0.113 0.887 14 C 0.103 3.897 15 N -0.854 5.854 16 Si 0.850 3.150 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.236 1.236 20 C -0.093 4.093 21 C -0.088 4.088 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.278 0.722 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 12.154 1.246 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.106 4.106 3 C -0.126 4.126 4 C -0.074 4.074 5 C -0.157 4.157 6 C 0.020 3.980 7 N -0.230 5.230 8 C -0.021 4.021 9 C -0.242 4.242 10 C -0.147 4.147 11 S 0.266 5.734 12 C -0.692 4.692 13 H 0.130 0.870 14 C -0.110 4.110 15 N -0.487 5.487 16 Si 0.674 3.326 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.159 1.159 20 C -0.100 4.100 21 C -0.107 4.107 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.658 12.240 1.373 14.503 hybrid contribution 0.459 -1.270 -0.054 1.352 sum -7.198 10.970 1.319 13.187 Atomic orbital electron populations 1.20744 0.91365 1.02408 1.02014 1.19459 0.95924 0.92812 1.02449 1.20504 0.93278 0.97274 1.01504 1.19430 0.93023 0.93971 1.00985 1.20586 1.00663 0.92485 1.01938 1.18542 0.89823 0.91473 0.98123 1.67943 1.06314 1.30660 1.18054 1.22617 0.99590 0.87612 0.92249 1.22261 0.94381 0.99988 1.07599 1.22819 0.96943 0.97780 0.97165 1.82780 1.15834 0.94203 1.80609 1.22867 0.96845 0.93085 1.56363 0.86992 1.24823 0.97566 0.95865 0.92714 1.69862 1.30252 1.04842 1.43721 0.86873 0.83902 0.81108 0.80729 1.18623 1.18995 1.15946 1.18415 0.94110 0.92615 1.04888 1.20786 0.92615 0.98014 0.99302 0.91494 0.91674 0.91898 0.86177 0.91704 0.92378 0.90576 0.83373 0.83232 0.91138 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.99 36.01 0.36 -0.86 16 2 C -0.11 -1.57 5.85 -104.94 -0.61 -2.18 16 3 C -0.11 -1.51 9.22 -39.96 -0.37 -1.88 16 4 C -0.07 -1.17 5.89 -104.49 -0.62 -1.78 16 5 C -0.10 -1.31 9.80 36.01 0.35 -0.95 16 6 C 0.14 2.77 6.59 -84.88 -0.56 2.21 16 7 N -0.52 -9.92 9.39 -11.09 -0.10 -10.03 16 8 C 0.15 2.78 11.13 -17.58 -0.20 2.58 16 9 C -0.21 -4.41 9.26 -39.15 -0.36 -4.78 16 10 C -0.02 -0.51 6.18 -38.04 -0.24 -0.74 16 11 S 0.01 0.25 18.19 -107.50 -1.96 -1.71 16 12 C -0.55 -14.39 9.55 30.95 0.30 -14.09 16 13 H 0.11 3.09 5.34 -52.49 -0.28 2.81 16 14 C 0.10 2.72 5.50 -17.46 -0.10 2.62 16 15 N -0.85 -23.60 13.96 55.49 0.77 -22.83 16 16 Si 0.85 19.12 27.74 -169.99 -4.71 14.41 16 17 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.24 -5.11 6.74 56.52 0.38 -4.73 16 20 C -0.09 -1.87 5.76 -106.64 -0.61 -2.49 16 21 C -0.09 -1.55 9.03 -39.59 -0.36 -1.91 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.70 8.07 -51.92 -0.42 0.28 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.08 1.07 7.54 -51.93 -0.39 0.67 16 29 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.15 3.28 5.24 -52.48 -0.27 3.00 16 31 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.13 2.20 6.95 -52.49 -0.36 1.84 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -28.42 283.98 -8.15 -36.57 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.42 Total: 3.56 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.01 Total: -24.25 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.67 Total: -32.86 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.96 Total: -1.71 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.42 -8.15 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.900 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds