Wall clock time and date at job start Mon Mar 30 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39240 * 119.59524 * 2 1 4 4 C 1.36159 * 121.02049 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.11981 * 180.02562 * 4 3 2 6 6 C 1.40561 * 119.75549 * 0.27120 * 4 3 2 7 7 N 1.33796 * 120.97540 * 179.72435 * 6 4 3 8 8 C 1.31303 * 121.72610 * 179.97438 * 7 6 4 9 9 C 1.38786 * 121.87041 * 0.02562 * 8 7 6 10 10 C 1.38843 * 119.66730 * 359.46584 * 9 8 7 11 11 S 1.76198 * 121.07387 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99800 * 351.20499 * 11 10 9 13 13 H 1.07994 * 120.00496 * 354.59405 * 12 11 10 14 14 C 1.38821 * 119.99726 * 174.58578 * 12 11 10 15 15 N 1.31541 * 120.00306 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46963 * 89.99592 * 16 14 12 18 18 H 1.48500 * 109.46880 * 209.99949 * 16 14 12 19 19 H 1.48492 * 109.47060 * 329.99431 * 16 14 12 20 20 C 1.41526 * 119.05018 * 359.46423 * 6 4 3 21 21 C 1.36320 * 119.59470 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47395 * 89.99707 * 1 2 3 23 23 H 1.09007 * 109.46707 * 210.00213 * 1 2 3 24 24 H 1.09000 * 109.47053 * 329.99311 * 1 2 3 25 25 H 1.08003 * 119.48528 * 0.02562 * 3 2 1 26 26 H 1.09006 * 109.47135 * 89.99886 * 5 4 3 27 27 H 1.08995 * 109.47401 * 329.99967 * 5 4 3 28 28 H 1.09000 * 109.46747 * 209.99346 * 5 4 3 29 29 H 1.07996 * 119.06331 * 179.97438 * 8 7 6 30 30 H 1.08009 * 120.16355 * 179.97438 * 9 8 7 31 31 H 0.96992 * 120.00257 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.18474 * 359.94164 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1947 1.2107 0.0000 4 6 3.5559 1.2446 -0.0005 5 6 4.2795 2.5666 0.0001 6 6 4.2836 0.0421 -0.0068 7 7 5.6216 0.0469 -0.0130 8 6 6.3160 -1.0674 -0.0185 9 6 5.7033 -2.3127 -0.0187 10 6 4.3176 -2.3968 -0.0017 11 16 3.5011 -3.9582 -0.0007 12 6 4.8755 -5.0223 -0.2896 13 1 5.8498 -4.6029 -0.4925 14 6 4.7060 -6.3997 -0.2563 15 7 5.7320 -7.1941 -0.4715 16 14 3.0205 -7.1250 0.0942 17 1 2.2881 -7.3151 -1.1835 18 1 3.1775 -8.4356 0.7746 19 1 2.2564 -6.2010 0.9701 20 6 3.5810 -1.1864 -0.0010 21 6 2.1803 -1.1854 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6398 2.1373 0.0004 26 1 4.4543 2.8846 1.0279 27 1 3.6731 3.3129 -0.5130 28 1 5.2344 2.4582 -0.5141 29 1 7.3946 -1.0134 -0.0238 30 1 6.3017 -3.2120 -0.0237 31 1 5.6136 -8.1565 -0.4478 32 1 1.6367 -2.1186 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040175294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:30 Heat of formation + Delta-G solvation = 17.861815 kcal Electronic energy + Delta-G solvation = -16177.894343 eV Core-core repulsion = 13613.963995 eV Total energy + Delta-G solvation = -2563.930348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.64436 -38.35857 -35.15730 -34.90271 -33.03637 -31.90727 -28.36143 -28.18921 -27.49893 -24.97783 -23.67987 -21.85583 -20.06307 -19.07272 -18.05398 -17.33347 -17.14541 -16.11345 -15.62515 -15.47451 -15.02819 -14.70690 -14.51421 -14.15945 -13.91593 -13.85415 -13.48125 -13.25911 -13.19644 -13.04866 -12.78552 -12.28734 -12.13358 -12.09784 -11.93225 -11.80844 -11.22406 -11.02614 -10.30250 -9.62958 -9.51303 -8.65364 -8.59781 -6.43044 -0.59240 -0.05975 0.86839 0.96971 1.25218 1.35148 1.49099 1.99541 2.09655 2.37287 2.74288 3.14386 3.44879 3.76587 3.79825 3.89533 4.18296 4.28979 4.40034 4.54011 4.62657 4.68865 4.85568 4.88850 4.92390 4.94632 5.08030 5.18058 5.22141 5.39601 5.55243 5.58441 5.64480 5.67135 6.04419 6.09970 6.73575 7.02184 8.45756 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.006622 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.506774 B = 4227.495311 C = 5263.214740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.077 4.077 5 C -0.097 4.097 6 C 0.114 3.886 7 N -0.507 5.507 8 C 0.143 3.857 9 C -0.219 4.219 10 C -0.044 4.044 11 S 0.005 5.995 12 C -0.565 4.565 13 H 0.083 0.917 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.907 3.093 17 H -0.255 1.255 18 H -0.254 1.254 19 H -0.224 1.224 20 C -0.107 4.107 21 C -0.121 4.121 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.182 0.818 30 H 0.131 0.869 31 H 0.283 0.717 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 15.294 1.586 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.083 4.083 3 C -0.116 4.116 4 C -0.079 4.079 5 C -0.154 4.154 6 C -0.009 4.009 7 N -0.219 5.219 8 C -0.028 4.028 9 C -0.250 4.250 10 C -0.167 4.167 11 S 0.257 5.743 12 C -0.712 4.712 13 H 0.100 0.900 14 C -0.154 4.154 15 N -0.535 5.535 16 Si 0.727 3.273 17 H -0.179 1.179 18 H -0.178 1.178 19 H -0.148 1.148 20 C -0.114 4.114 21 C -0.140 4.140 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.184 0.816 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.199 0.801 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.364 15.441 1.715 18.676 hybrid contribution 1.286 -1.871 -0.178 2.278 sum -9.078 13.570 1.537 16.399 Atomic orbital electron populations 1.20874 0.88209 1.04040 1.03496 1.20000 0.98177 0.91931 0.98220 1.21031 0.92751 0.98764 0.99087 1.19895 0.94036 0.94004 0.99950 1.20643 1.00280 0.91516 1.02916 1.19072 0.90014 0.92561 0.99295 1.68015 1.06746 1.30438 1.16705 1.23009 1.01111 0.86512 0.92160 1.22297 0.94364 1.00449 1.07915 1.22975 0.97462 0.97883 0.98385 1.82349 1.14372 0.94392 1.83159 1.22994 0.97163 0.94227 1.56787 0.89960 1.25685 1.01303 0.96102 0.92346 1.69954 1.32500 1.05345 1.45658 0.86017 0.79425 0.80777 0.81065 1.17926 1.17783 1.14775 1.18664 0.95436 0.92107 1.05159 1.20890 0.91712 0.99413 1.02015 0.89869 0.91412 0.89025 0.81643 0.90591 0.89106 0.91919 0.80127 0.85150 0.90725 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.99 71.24 0.71 -1.22 16 2 C -0.08 -2.16 5.85 -20.07 -0.12 -2.27 16 3 C -0.10 -2.30 9.22 22.03 0.20 -2.10 16 4 C -0.08 -2.24 5.89 -19.78 -0.12 -2.35 16 5 C -0.10 -2.15 9.80 71.24 0.70 -1.45 16 6 C 0.11 4.25 6.59 40.22 0.26 4.51 16 7 N -0.51 -19.11 9.39 -189.01 -1.77 -20.89 16 8 C 0.14 5.38 11.13 84.90 0.94 6.33 16 9 C -0.22 -9.67 9.26 22.55 0.21 -9.46 16 10 C -0.04 -2.00 6.18 23.27 0.14 -1.85 16 11 S 0.01 0.26 18.19 -56.49 -1.03 -0.77 16 12 C -0.57 -31.56 9.55 67.96 0.65 -30.91 16 13 H 0.08 4.94 5.34 -2.91 -0.02 4.92 16 14 C 0.05 2.96 5.50 84.88 0.47 3.42 16 15 N -0.90 -52.06 13.96 21.65 0.30 -51.76 16 16 Si 0.91 40.13 27.74 68.60 1.90 42.04 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.22 -9.42 6.74 99.48 0.67 -8.75 16 20 C -0.11 -4.29 5.76 -21.17 -0.12 -4.42 16 21 C -0.12 -4.15 9.03 22.27 0.20 -3.95 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.21 8.07 -2.38 -0.02 1.19 16 24 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 25 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 26 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 28 H 0.06 1.58 7.54 -2.39 -0.02 1.56 16 29 H 0.18 5.40 8.06 -2.91 -0.02 5.37 16 30 H 0.13 6.23 5.24 -2.91 -0.02 6.21 16 31 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.12 4.25 6.95 -2.91 -0.02 4.23 16 Total: -1.00 -65.11 283.98 4.64 -60.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.10 Total: 16.65 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.14 Total: -45.73 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.47 Total: -72.65 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.90 Total: 42.04 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.03 Total: -0.77 kcal Total: -65.11 4.64 -60.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040175294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.328 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds