Wall clock time and date at job start Mon Mar 30 2020 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86806 * 119.99717 * 2 1 4 4 H 1.48506 * 109.46771 * 239.99792 * 3 2 1 5 5 H 1.48497 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47347 * 119.99899 * 3 2 1 7 7 C 1.39880 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 193.82321 * 7 2 1 9 9 C 1.41197 * 119.99766 * 13.81766 * 7 2 1 10 10 C 1.40850 * 120.17545 * 207.38852 * 9 7 2 11 11 C 1.36419 * 119.81218 * 180.02562 * 10 9 7 12 12 C 1.39333 * 120.18461 * 0.02562 * 11 10 9 13 13 O 1.35658 * 119.82385 * 179.71747 * 12 11 10 14 14 C 1.35655 * 117.99566 * 77.49108 * 13 12 11 15 15 C 1.38879 * 119.67008 * 176.15646 * 14 13 12 16 16 C 1.38452 * 119.17305 * 180.02562 * 15 14 13 17 17 C 1.38708 * 118.51626 * 359.97438 * 16 15 14 18 18 C 1.38424 * 119.26620 * 0.02562 * 17 16 15 19 19 F 1.35099 * 119.61326 * 179.97438 * 18 17 16 20 20 N 1.32113 * 120.77387 * 359.71319 * 18 17 16 21 21 C 1.39338 * 120.36114 * 359.97438 * 12 11 10 22 22 C 1.36421 * 120.18531 * 0.02562 * 21 12 11 23 23 H 0.97007 * 120.00404 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.09470 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.90910 * 179.97438 * 11 10 9 26 26 H 1.08005 * 120.41195 * 359.97438 * 15 14 13 27 27 H 1.08005 * 120.74364 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.36869 * 179.97438 * 17 16 15 29 29 H 1.08009 * 119.91092 * 180.02562 * 21 12 11 30 30 H 1.07999 * 120.09818 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6966 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0648 -1.2248 0.2240 9 6 1.3329 -2.4166 -0.2910 10 6 1.8012 -3.6359 0.2362 11 6 1.1433 -4.7961 -0.0507 12 6 0.0115 -4.7771 -0.8630 13 8 -0.6338 -5.9358 -1.1483 14 6 -1.4396 -6.4673 -0.1951 15 6 -2.1788 -7.6085 -0.4779 16 6 -2.9983 -8.1418 0.5024 17 6 -3.0495 -7.5124 1.7373 18 6 -2.2858 -6.3778 1.9508 19 9 -2.3308 -5.7588 3.1508 20 7 -1.5095 -5.8961 0.9965 21 6 -0.4583 -3.5751 -1.3885 22 6 0.1881 -2.4062 -1.1113 23 1 -0.4851 0.8401 -0.0004 24 1 2.6786 -3.6524 0.8656 25 1 1.5013 -5.7319 0.3523 26 1 -2.1158 -8.0736 -1.4506 27 1 -3.5839 -9.0287 0.3100 28 1 -3.6790 -7.9026 2.5234 29 1 -1.3366 -3.5688 -2.0170 30 1 -0.1775 -1.4753 -1.5189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040711402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:17 Heat of formation + Delta-G solvation = -15.449800 kcal Electronic energy + Delta-G solvation = -18030.379479 eV Core-core repulsion = 14898.791455 eV Total energy + Delta-G solvation = -3131.588024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.77271 -40.37100 -38.32528 -36.58220 -33.53678 -32.40155 -30.37731 -29.62760 -28.99849 -25.35244 -23.39316 -23.21297 -21.22025 -20.82521 -18.39359 -17.63392 -17.43671 -16.02381 -15.97196 -15.81007 -15.41002 -14.73636 -14.67345 -14.05351 -13.58052 -13.09132 -13.03357 -12.75627 -12.21926 -12.19868 -11.92954 -11.59608 -11.21590 -11.11308 -10.97140 -10.43927 -9.99581 -9.80632 -9.50009 -9.42789 -9.26689 -8.24135 -7.67028 -7.34135 -6.85673 -4.48057 1.15422 1.34625 2.43676 3.00263 3.01193 3.02927 3.05701 3.62875 3.83107 3.84960 4.02765 4.59107 4.65516 5.02556 5.16349 5.37583 5.60153 5.82582 5.94001 6.13521 6.14426 6.20609 6.53334 6.81967 6.93980 7.03741 7.16563 7.40298 7.47897 7.79325 7.90331 7.91078 8.09872 8.32344 8.53677 8.74760 8.87418 10.07430 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.005052 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.476663 B = 5540.887315 C = 5915.287029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.451 4.451 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.217 4.217 11 C -0.068 4.068 12 C -0.070 4.070 13 O -0.229 6.229 14 C 0.357 3.643 15 C -0.215 4.215 16 C -0.021 4.021 17 C -0.251 4.251 18 C 0.346 3.654 19 F -0.114 7.114 20 N -0.547 5.547 21 C -0.086 4.086 22 C -0.157 4.157 23 H 0.284 0.716 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 -9.820 0.278 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.237 4.237 11 C -0.087 4.087 12 C -0.113 4.113 13 O -0.132 6.132 14 C 0.179 3.821 15 C -0.236 4.236 16 C -0.046 4.046 17 C -0.272 4.272 18 C 0.193 3.807 19 F -0.093 7.093 20 N -0.276 5.276 21 C -0.105 4.105 22 C -0.177 4.177 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.163 0.837 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.112 0.888 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.764 -8.967 0.222 10.156 hybrid contribution -0.192 0.337 0.457 0.599 sum -4.957 -8.630 0.678 9.976 Atomic orbital electron populations 1.69825 1.07623 1.29678 1.34026 1.25986 0.94848 1.01587 0.92217 0.86261 0.80043 0.79761 0.80095 1.18667 1.20193 1.18850 1.19626 0.96931 0.90747 1.40674 0.90046 1.17717 0.90960 0.92170 0.87601 1.20643 1.03933 0.92502 1.06582 1.20340 0.95051 0.97128 0.96147 1.18070 0.97017 0.83094 1.13089 1.84817 1.54522 1.38350 1.35541 1.20369 0.87514 0.88886 0.85309 1.21106 1.01775 0.98224 1.02505 1.21161 0.94641 0.97806 0.90961 1.21547 1.06430 0.98669 1.00602 1.17830 0.92697 0.89047 0.81171 1.91625 1.94508 1.82537 1.40613 1.66730 1.23639 1.35401 1.01792 1.20428 0.98599 0.91512 0.99928 1.20926 0.99448 0.96032 1.01265 0.90504 0.88329 0.89196 0.83672 0.83591 0.83934 0.88825 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.19 10.91 55.54 0.61 -19.58 16 2 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 3 Si 0.91 18.27 29.58 -169.99 -5.03 13.24 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.77 9.04 -37.84 -0.34 -12.11 16 8 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.12 3.16 5.55 -106.80 -0.59 2.56 16 10 C -0.22 -5.44 9.74 -39.25 -0.38 -5.82 16 11 C -0.07 -1.62 9.54 -39.83 -0.38 -2.00 16 12 C -0.07 -1.68 5.15 -38.77 -0.20 -1.87 16 13 O -0.23 -4.87 9.94 -2.11 -0.02 -4.89 16 14 C 0.36 6.79 7.41 -17.10 -0.13 6.66 16 15 C -0.22 -3.03 10.04 -39.27 -0.39 -3.42 16 16 C -0.02 -0.23 10.16 -39.33 -0.40 -0.63 16 17 C -0.25 -3.24 10.08 -39.34 -0.40 -3.63 16 18 C 0.35 6.05 8.41 -17.36 -0.15 5.90 16 19 F -0.11 -2.03 17.29 2.25 0.04 -1.99 16 20 N -0.55 -11.33 9.09 -13.65 -0.12 -11.46 16 21 C -0.09 -2.10 9.92 -39.83 -0.40 -2.49 16 22 C -0.16 -4.12 8.62 -39.25 -0.34 -4.46 16 23 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 24 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 25 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 26 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 27 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.12 3.30 6.22 -52.49 -0.33 2.97 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -28.96 277.75 -6.94 -35.90 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.41 Total: 4.21 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -4.18 Total: -19.62 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.48 Total: -31.04 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.02 Total: -4.89 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.96 -6.94 -35.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040711402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.448 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds