Wall clock time and date at job start Mon Mar 30 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86806 * 119.99717 * 2 1 4 4 H 1.48506 * 109.46771 * 239.99792 * 3 2 1 5 5 H 1.48497 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47347 * 119.99899 * 3 2 1 7 7 C 1.39880 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 193.82321 * 7 2 1 9 9 C 1.41197 * 119.99766 * 13.81766 * 7 2 1 10 10 C 1.40850 * 120.17545 * 207.38852 * 9 7 2 11 11 C 1.36419 * 119.81218 * 180.02562 * 10 9 7 12 12 C 1.39333 * 120.18461 * 0.02562 * 11 10 9 13 13 O 1.35658 * 119.82385 * 179.71747 * 12 11 10 14 14 C 1.35655 * 117.99566 * 77.49108 * 13 12 11 15 15 C 1.38879 * 119.67008 * 176.15646 * 14 13 12 16 16 C 1.38452 * 119.17305 * 180.02562 * 15 14 13 17 17 C 1.38708 * 118.51626 * 359.97438 * 16 15 14 18 18 C 1.38424 * 119.26620 * 0.02562 * 17 16 15 19 19 F 1.35099 * 119.61326 * 179.97438 * 18 17 16 20 20 N 1.32113 * 120.77387 * 359.71319 * 18 17 16 21 21 C 1.39338 * 120.36114 * 359.97438 * 12 11 10 22 22 C 1.36421 * 120.18531 * 0.02562 * 21 12 11 23 23 H 0.97007 * 120.00404 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.09470 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.90910 * 179.97438 * 11 10 9 26 26 H 1.08005 * 120.41195 * 359.97438 * 15 14 13 27 27 H 1.08005 * 120.74364 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.36869 * 179.97438 * 17 16 15 29 29 H 1.08009 * 119.91092 * 180.02562 * 21 12 11 30 30 H 1.07999 * 120.09818 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6966 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0648 -1.2248 0.2240 9 6 1.3329 -2.4166 -0.2910 10 6 1.8012 -3.6359 0.2362 11 6 1.1433 -4.7961 -0.0507 12 6 0.0115 -4.7771 -0.8630 13 8 -0.6338 -5.9358 -1.1483 14 6 -1.4396 -6.4673 -0.1951 15 6 -2.1788 -7.6085 -0.4779 16 6 -2.9983 -8.1418 0.5024 17 6 -3.0495 -7.5124 1.7373 18 6 -2.2858 -6.3778 1.9508 19 9 -2.3308 -5.7588 3.1508 20 7 -1.5095 -5.8961 0.9965 21 6 -0.4583 -3.5751 -1.3885 22 6 0.1881 -2.4062 -1.1113 23 1 -0.4851 0.8401 -0.0004 24 1 2.6786 -3.6524 0.8656 25 1 1.5013 -5.7319 0.3523 26 1 -2.1158 -8.0736 -1.4506 27 1 -3.5839 -9.0287 0.3100 28 1 -3.6790 -7.9026 2.5234 29 1 -1.3366 -3.5688 -2.0170 30 1 -0.1775 -1.4753 -1.5189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040711402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:16 Heat of formation + Delta-G solvation = -33.100552 kcal Electronic energy + Delta-G solvation = -18031.144873 eV Core-core repulsion = 14898.791455 eV Total energy + Delta-G solvation = -3132.353418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.075 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.06645 -41.78540 -39.91607 -38.31606 -35.40390 -33.60060 -31.94083 -31.47909 -30.67437 -27.14868 -24.78764 -24.46152 -23.12994 -22.57506 -19.89265 -19.36424 -19.02956 -17.45627 -17.21551 -17.03268 -17.02083 -16.41149 -16.24387 -15.82540 -14.91838 -14.70396 -14.46263 -14.17342 -14.11223 -13.75997 -13.28673 -13.22701 -12.95404 -12.77841 -12.63290 -12.19781 -11.78280 -11.35122 -11.11186 -10.97270 -10.80980 -9.62888 -9.56437 -9.24341 -8.70788 -6.44915 -0.04819 0.22522 0.62303 1.02572 1.37489 1.45728 1.51176 2.15638 2.21966 2.58682 2.60719 2.82498 3.56816 3.62443 3.95182 4.12331 4.24726 4.28393 4.31836 4.73868 4.85037 4.92775 5.02461 5.07908 5.09588 5.23117 5.40065 5.53983 5.69387 5.89931 5.95206 6.14762 6.41971 6.56196 6.72416 6.80778 6.99891 8.25412 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.005052 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.476663 B = 5540.887315 C = 5915.287029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.085 0.915 9 C 0.088 3.912 10 C -0.230 4.230 11 C -0.075 4.075 12 C -0.055 4.055 13 O -0.243 6.243 14 C 0.317 3.683 15 C -0.197 4.197 16 C 0.001 3.999 17 C -0.218 4.218 18 C 0.305 3.695 19 F -0.129 7.129 20 N -0.601 5.601 21 C -0.097 4.097 22 C -0.174 4.174 23 H 0.292 0.708 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.175 0.825 27 H 0.208 0.792 28 H 0.183 0.817 29 H 0.108 0.892 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 -11.882 0.319 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.515 4.515 8 H 0.103 0.897 9 C 0.085 3.915 10 C -0.249 4.249 11 C -0.094 4.094 12 C -0.098 4.098 13 O -0.148 6.148 14 C 0.140 3.860 15 C -0.218 4.218 16 C -0.024 4.024 17 C -0.240 4.240 18 C 0.153 3.847 19 F -0.108 7.108 20 N -0.330 5.330 21 C -0.116 4.116 22 C -0.194 4.194 23 H 0.102 0.898 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.193 0.807 27 H 0.225 0.775 28 H 0.201 0.799 29 H 0.126 0.874 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.184 -11.059 0.280 12.674 hybrid contribution 0.060 0.685 0.478 0.837 sum -6.125 -10.374 0.758 12.070 Atomic orbital electron populations 1.69886 1.09225 1.31054 1.34660 1.26904 0.95576 1.04927 0.90966 0.85115 0.78633 0.74873 0.80286 1.18009 1.19109 1.18245 1.19903 0.97348 0.91696 1.42522 0.89710 1.18053 0.91746 0.93215 0.88472 1.20833 1.04494 0.92661 1.06951 1.20522 0.95183 0.97366 0.96281 1.18069 0.96784 0.83823 1.11083 1.84659 1.55805 1.37366 1.36982 1.20637 0.89562 0.91011 0.84766 1.21577 0.99929 0.95759 1.04516 1.21878 0.93106 0.98482 0.88915 1.22071 1.03910 0.95764 1.02209 1.18353 0.94591 0.91151 0.80615 1.91583 1.94767 1.83186 1.41258 1.66421 1.25705 1.37644 1.03231 1.20624 0.98994 0.91569 1.00378 1.20897 1.00128 0.96229 1.02129 0.89775 0.87429 0.87748 0.80707 0.77544 0.79929 0.87394 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.70 10.91 21.82 0.24 -43.46 16 2 C 0.03 1.60 5.20 85.23 0.44 2.05 16 3 Si 0.99 37.89 29.58 68.60 2.03 39.92 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.49 -26.41 9.04 23.39 0.21 -26.20 16 8 H 0.08 4.36 7.88 -2.91 -0.02 4.33 16 9 C 0.09 4.92 5.55 -21.28 -0.12 4.80 16 10 C -0.23 -12.01 9.74 22.48 0.22 -11.79 16 11 C -0.07 -3.69 9.54 22.11 0.21 -3.48 16 12 C -0.05 -2.68 5.15 22.80 0.12 -2.57 16 13 O -0.24 -10.37 9.94 -30.47 -0.30 -10.67 16 14 C 0.32 11.77 7.41 84.77 0.63 12.40 16 15 C -0.20 -4.79 10.04 22.47 0.23 -4.57 16 16 C 0.00 0.01 10.16 22.43 0.23 0.24 16 17 C -0.22 -4.69 10.08 22.43 0.23 -4.46 16 18 C 0.31 10.35 8.41 84.69 0.71 11.06 16 19 F -0.13 -4.62 17.29 44.97 0.78 -3.85 16 20 N -0.60 -25.02 9.09 -309.95 -2.82 -27.84 16 21 C -0.10 -4.93 9.92 22.11 0.22 -4.71 16 22 C -0.17 -9.60 8.62 22.48 0.19 -9.41 16 23 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 24 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 25 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 26 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.21 1.13 8.06 -2.91 -0.02 1.10 16 28 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.11 6.33 6.22 -2.91 -0.02 6.32 16 Total: -1.00 -68.30 277.75 4.61 -63.69 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.17 Total: 18.85 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 3.52 Total: -36.65 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.58 Total: -71.30 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.30 Total: -10.67 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.78 Total: -3.85 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -68.30 4.61 -63.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040711402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.592 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds