Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47350 * 270.00023 * 3 2 1 5 5 H 1.48504 * 109.46977 * 29.99899 * 3 2 1 6 6 H 1.48500 * 109.47135 * 149.99696 * 3 2 1 7 7 C 1.37877 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46768 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.46796 * 180.02562 * 10 9 7 12 12 C 1.76203 * 103.00043 * 179.97438 * 11 10 9 13 13 C 1.39008 * 120.01782 * 270.02310 * 12 11 10 14 14 F 1.35095 * 120.00834 * 359.97438 * 13 12 11 15 15 C 1.38296 * 119.98023 * 179.97438 * 13 12 11 16 16 C 1.38865 * 120.01604 * 359.97379 * 15 13 12 17 17 N 1.39975 * 119.97780 * 179.97438 * 16 15 13 18 18 C 1.38860 * 120.03798 * 0.02562 * 16 15 13 19 19 C 1.38296 * 120.01830 * 0.02562 * 18 16 15 20 20 F 1.35095 * 120.01349 * 180.02562 * 19 18 16 21 21 H 0.96997 * 119.99743 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46836 * 60.00102 * 9 7 2 23 23 H 1.08998 * 109.47284 * 299.99733 * 9 7 2 24 24 H 1.08999 * 109.47160 * 60.00544 * 10 9 7 25 25 H 1.08998 * 109.47200 * 300.00028 * 10 9 7 26 26 H 1.07999 * 119.98846 * 180.25718 * 15 13 12 27 27 H 0.97000 * 120.00663 * 0.02562 * 17 16 15 28 28 H 0.97000 * 120.00154 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.99027 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2331 -0.0002 12 6 2.6269 -6.4348 -0.0009 13 6 3.1357 -6.9081 -1.2048 14 9 2.6420 -6.4472 -2.3748 15 6 4.1475 -7.8509 -1.2044 16 6 4.6554 -8.3243 -0.0018 17 7 5.6791 -9.2790 -0.0024 18 6 4.1477 -7.8520 1.2012 19 6 3.1352 -6.9100 1.2026 20 9 2.6416 -6.4501 2.3730 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 4.5458 -8.2157 -2.1397 27 1 6.0338 -9.6094 -0.8426 28 1 6.0344 -9.6096 0.8375 29 1 4.5435 -8.2204 2.1361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042143374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = -74.998758 kcal Electronic energy + Delta-G solvation = -16286.206104 eV Core-core repulsion = 13164.019489 eV Total energy + Delta-G solvation = -3122.186615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.93461 -48.88740 -39.16649 -34.55506 -33.63794 -30.80825 -30.43660 -29.08397 -25.19792 -23.09583 -22.86067 -21.07490 -18.41391 -18.02298 -17.13579 -16.46729 -16.22118 -15.96146 -15.57727 -15.18249 -15.16475 -14.79447 -14.46330 -13.59707 -13.57970 -12.98237 -12.67796 -12.50432 -12.04879 -11.97698 -11.48596 -11.00052 -10.88112 -10.53481 -10.17148 -9.67883 -9.58653 -9.10838 -8.87945 -8.38152 -7.92141 -7.17053 -6.01927 -4.06164 0.89526 0.93125 2.14426 3.09275 3.20556 3.32262 3.38026 3.41457 3.52853 4.08767 4.25752 4.45523 4.71200 4.75963 5.20561 5.33500 5.55786 5.62502 5.78949 5.92587 6.06717 6.26098 6.45524 6.77465 6.93410 7.26962 7.60361 7.69506 7.94294 8.31921 8.98365 9.57235 11.08902 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.004648 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.884911 B = 6022.951605 C = 6121.774416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.071 4.071 11 S -0.152 6.152 12 C -0.244 4.244 13 C 0.218 3.782 14 F -0.112 7.112 15 C -0.255 4.255 16 C 0.283 3.717 17 N -0.866 5.866 18 C -0.255 4.255 19 C 0.218 3.782 20 F -0.112 7.112 21 H 0.262 0.738 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.141 0.859 27 H 0.404 0.596 28 H 0.404 0.596 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -19.411 -0.003 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.219 4.219 11 S 0.082 5.918 12 C -0.358 4.358 13 C 0.194 3.806 14 F -0.090 7.090 15 C -0.280 4.280 16 C 0.176 3.824 17 N -0.404 5.404 18 C -0.280 4.280 19 C 0.194 3.806 20 F -0.090 7.090 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.159 0.841 27 H 0.233 0.767 28 H 0.233 0.767 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.641 -19.398 0.003 21.661 hybrid contribution 1.951 0.922 -0.011 2.158 sum 11.591 -18.476 -0.009 21.811 Atomic orbital electron populations 1.69973 1.06044 1.26830 1.50079 1.25010 0.94908 0.99265 0.95097 0.86514 0.79758 0.83115 0.78149 1.20565 1.21097 1.19838 1.21084 0.93013 0.90168 1.51636 0.92449 1.18902 0.93401 0.89146 0.98611 1.23934 1.01901 0.92665 1.03371 1.85705 1.09631 0.99241 1.97231 1.21731 1.10184 1.10899 0.93015 1.17078 0.91043 0.91568 0.80874 1.91587 1.85938 1.86821 1.44692 1.20403 1.03704 1.05671 0.98222 1.17071 0.86439 0.86828 0.92060 1.42542 1.40325 1.45944 1.11563 1.20401 1.03692 1.05689 0.98216 1.17080 0.91021 0.91596 0.80865 1.91587 1.85945 1.86853 1.44651 0.92794 0.95410 0.95389 0.91280 0.91288 0.84111 0.76744 0.76745 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.35 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.04 1.03 4.98 -27.88 -0.14 0.89 15 10 C -0.07 -1.61 5.84 37.16 0.22 -1.40 15 11 S -0.15 -3.10 20.87 -107.50 -2.24 -5.35 15 12 C -0.24 -4.12 5.70 -39.01 -0.22 -4.34 15 13 C 0.22 3.27 7.27 -39.27 -0.29 2.98 15 14 F -0.11 -1.84 16.75 2.25 0.04 -1.80 15 15 C -0.25 -2.86 9.87 -39.33 -0.39 -3.25 15 16 C 0.28 2.76 6.76 -83.68 -0.57 2.19 15 17 N -0.87 -4.78 9.10 32.45 0.30 -4.49 15 18 C -0.25 -2.86 9.87 -39.33 -0.39 -3.25 15 19 C 0.22 3.27 7.27 -39.27 -0.29 2.98 15 20 F -0.11 -1.84 16.75 2.25 0.04 -1.80 15 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.07 1.52 8.14 -51.92 -0.42 1.10 15 26 H 0.14 1.22 8.06 -52.49 -0.42 0.79 15 27 H 0.40 1.45 8.84 -40.82 -0.36 1.09 15 28 H 0.40 1.45 8.84 -40.82 -0.36 1.09 15 29 H 0.14 1.22 8.06 -52.49 -0.42 0.79 15 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -32.15 282.15 -7.17 -39.32 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -2.80 Total: -3.78 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.47 Total: -16.81 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 1.03 Total: -30.83 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.24 Total: -5.35 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.15 -7.17 -39.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042143374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.674 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds